RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 MALT1Q9UDY8 824 aa5.05□□□□□ -1.6
VPS29-212ENST00000621131 ERRFI1Q9UJM3 462 aaPredicted RBP5.05□□□□□ -1.6
VPS29-212ENST00000621131 DNAJC16Q9Y2G8 782 aa5.05□□□□□ -1.6
VPS29-212ENST00000621131 PRUNE2Q8WUY3 3088 aa5.05□□□□□ -1.6
VPS29-212ENST00000621131 ATAD5Q96QE3 1844 aa5.04□□□□□ -1.6
VPS29-212ENST00000621131 A0A1B0GVL5 298 aa5.04□□□□□ -1.6
VPS29-212ENST00000621131 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP5.04□□□□□ -1.6
VPS29-212ENST00000621131 hCG_1642624A0A1W2PR95 340 aa5.04□□□□□ -1.6
VPS29-212ENST00000621131 PRAC2D3DTV9 90 aa5.04□□□□□ -1.6
VPS29-212ENST00000621131 ZBTB5O15062 677 aa5.04□□□□□ -1.6
VPS29-212ENST00000621131 SMC2O95347 1197 aa5.04□□□□□ -1.6
VPS29-212ENST00000621131 GH2P01242 217 aa5.04□□□□□ -1.6
VPS29-212ENST00000621131 AFPP02771 609 aaKnown RBP5.04□□□□□ -1.6
VPS29-212ENST00000621131 PTMAP06454 111 aaKnown RBP5.04□□□□□ -1.6
VPS29-212ENST00000621131 ASNSP08243 561 aa5.04□□□□□ -1.6
VPS29-212ENST00000621131 DHRS4L1P0CG22 281 aa5.04□□□□□ -1.6
VPS29-212ENST00000621131 IGHV4-30-4P0DP06 118 aa5.04□□□□□ -1.6
VPS29-212ENST00000621131 MARCKSP29966 332 aaPredicted RBP5.04□□□□□ -1.6
VPS29-212ENST00000621131 LONP1P36776 959 aaKnown RBP5.04□□□□□ -1.6
VPS29-212ENST00000621131 STAT2P52630 851 aa5.04□□□□□ -1.6
VPS29-212ENST00000621131 BRD3Q15059 726 aa5.04□□□□□ -1.6
VPS29-212ENST00000621131 CAMK4Q16566 473 aa5.04□□□□□ -1.6
VPS29-212ENST00000621131 RESP18Q5W5W9 173 aa5.04□□□□□ -1.6
VPS29-212ENST00000621131 KLHL24Q6TFL4 600 aa5.04□□□□□ -1.6
VPS29-212ENST00000621131 POC1AQ8NBT0 407 aa5.04□□□□□ -1.6
VPS29-212ENST00000621131 CNNM3Q8NE01 707 aa5.04□□□□□ -1.6
VPS29-212ENST00000621131 DNAAF1Q8NEP3 725 aa5.04□□□□□ -1.6
VPS29-212ENST00000621131 SPATA20Q8TB22 786 aa5.04□□□□□ -1.6
VPS29-212ENST00000621131 CHURC1Q8WUH1 139 aa5.04□□□□□ -1.6
VPS29-212ENST00000621131 CCDC47Q96A33 483 aaKnown RBP5.04□□□□□ -1.6
VPS29-212ENST00000621131 NODALQ96S42 347 aa5.04□□□□□ -1.6
VPS29-212ENST00000621131 FTOQ9C0B1 505 aaKnown RBP eCLIP5.04□□□□□ -1.6
VPS29-212ENST00000621131 ZMYND12Q9H0C1 365 aa5.04□□□□□ -1.6
VPS29-212ENST00000621131 SDF2L1Q9HCN8 221 aa5.04□□□□□ -1.6
VPS29-212ENST00000621131 CNOT7Q9UIV1 285 aaKnown RBP5.04□□□□□ -1.6
VPS29-212ENST00000621131 PNMA2Q9UL42 364 aa5.04□□□□□ -1.6
VPS29-212ENST00000621131 SCN4AP35499 1836 aa5.04□□□□□ -1.6
VPS29-212ENST00000621131 DOCK1Q14185 1865 aa5.03□□□□□ -1.6
VPS29-212ENST00000621131 KIAA0100Q14667 2235 aaKnown RBP5.03□□□□□ -1.6
VPS29-212ENST00000621131 CPED1A4D0V7 1026 aa5.03□□□□□ -1.6
VPS29-212ENST00000621131 NEMFO60524 1076 aa5.03□□□□□ -1.6
VPS29-212ENST00000621131 TPM3P06753 285 aa5.03□□□□□ -1.6
VPS29-212ENST00000621131 CHRM4P08173 479 aa5.03□□□□□ -1.6
VPS29-212ENST00000621131 GCFC2P16383 781 aaKnown RBP5.03□□□□□ -1.6
VPS29-212ENST00000621131 TCEA1P23193 301 aaKnown RBP5.03□□□□□ -1.6
VPS29-212ENST00000621131 RYKP34925 604 aa5.03□□□□□ -1.6
VPS29-212ENST00000621131 PRPHP41219 470 aa5.03□□□□□ -1.6
VPS29-212ENST00000621131 NDUFA8P51970 172 aa5.03□□□□□ -1.6
VPS29-212ENST00000621131 PRKG1Q13976 671 aa5.03□□□□□ -1.6
VPS29-212ENST00000621131 CDC37Q16543 378 aaPredicted RBP5.03□□□□□ -1.6
VPS29-212ENST00000621131 RBM43Q6ZSC3 357 aaKnown RBP5.03□□□□□ -1.6
VPS29-212ENST00000621131 EXOC3L1Q86VI1 746 aa5.03□□□□□ -1.6
VPS29-212ENST00000621131 GPC2Q8N158 579 aa5.03□□□□□ -1.6
VPS29-212ENST00000621131 NAGSQ8N159 534 aa5.03□□□□□ -1.6
VPS29-212ENST00000621131 MYCT1Q8N699 235 aa5.03□□□□□ -1.6
VPS29-212ENST00000621131 ARRDC2Q8TBH0 407 aa5.03□□□□□ -1.6
VPS29-212ENST00000621131 SPPL3Q8TCT6 385 aa5.03□□□□□ -1.6
VPS29-212ENST00000621131 SORCS1Q8WY21 1168 aa5.03□□□□□ -1.6
VPS29-212ENST00000621131 FAM167BQ9BTA0 163 aa5.03□□□□□ -1.6
VPS29-212ENST00000621131 TMEM39BQ9GZU3 492 aa5.03□□□□□ -1.6
VPS29-212ENST00000621131 UBA5Q9GZZ9 404 aa5.03□□□□□ -1.6
VPS29-212ENST00000621131 GOLPH3LQ9H4A5 285 aa5.03□□□□□ -1.6
VPS29-212ENST00000621131 DNAJC18Q9H819 358 aa5.03□□□□□ -1.6
VPS29-212ENST00000621131 RIC8AQ9NPQ8 531 aa5.03□□□□□ -1.6
VPS29-212ENST00000621131 TCF7L2Q9NQB0 619 aa5.03□□□□□ -1.6
VPS29-212ENST00000621131 NDRG3Q9UGV2 375 aa5.03□□□□□ -1.6
VPS29-212ENST00000621131 FBXO2Q9UK22 296 aaPredicted RBP5.03□□□□□ -1.6
VPS29-212ENST00000621131 FEM1BQ9UK73 627 aa5.03□□□□□ -1.6
VPS29-212ENST00000621131 ABCB11O95342 1321 aa5.02□□□□□ -1.61
VPS29-212ENST00000621131 FAM237AA0A1B0GTK4 181 aa5.02□□□□□ -1.61
VPS29-212ENST00000621131 VWA3AA6NCI4 1184 aa5.02□□□□□ -1.61
VPS29-212ENST00000621131 F5H6K3 240 aa5.02□□□□□ -1.61
VPS29-212ENST00000621131 EBAG9O00559 213 aa5.02□□□□□ -1.61
VPS29-212ENST00000621131 WDR46O15213 610 aaKnown RBP5.02□□□□□ -1.61
VPS29-212ENST00000621131 CYTH3O43739 400 aa5.02□□□□□ -1.61
VPS29-212ENST00000621131 GAGE7O76087 117 aa5.02□□□□□ -1.61
VPS29-212ENST00000621131 NDUFB10O96000 172 aa5.02□□□□□ -1.61
VPS29-212ENST00000621131 OR52Z1P0C646 297 aa5.02□□□□□ -1.61
VPS29-212ENST00000621131 GAGE12FP0CL80 117 aa5.02□□□□□ -1.61
VPS29-212ENST00000621131 GAGE12GP0CL81 117 aa5.02□□□□□ -1.61
VPS29-212ENST00000621131 GAGE12IP0CL82 117 aa5.02□□□□□ -1.61
VPS29-212ENST00000621131 NF2P35240 595 aa5.02□□□□□ -1.61
VPS29-212ENST00000621131 UBA7P41226 1012 aa5.02□□□□□ -1.61
VPS29-212ENST00000621131 KLRC3Q07444 240 aa5.02□□□□□ -1.61
VPS29-212ENST00000621131 ARL16Q0P5N6 197 aa5.02□□□□□ -1.61
VPS29-212ENST00000621131 GAGE1Q13065 139 aa5.02□□□□□ -1.61
VPS29-212ENST00000621131 GAGE4Q13068 117 aa5.02□□□□□ -1.61
VPS29-212ENST00000621131 DHX8Q14562 1220 aaKnown RBP5.02□□□□□ -1.61
VPS29-212ENST00000621131 LETM2Q2VYF4 491 aa5.02□□□□□ -1.61
VPS29-212ENST00000621131 DEFB115Q30KQ5 88 aa5.02□□□□□ -1.61
VPS29-212ENST00000621131 IL20RBQ6UXL0 311 aa5.02□□□□□ -1.61
VPS29-212ENST00000621131 DSTYKQ6XUX3 929 aa5.02□□□□□ -1.61
VPS29-212ENST00000621131 KRBA2Q6ZNG9 492 aa5.02□□□□□ -1.61
VPS29-212ENST00000621131 HERC6Q8IVU3 1022 aa5.02□□□□□ -1.61
VPS29-212ENST00000621131 SFTPA2Q8IWL1 248 aa5.02□□□□□ -1.61
VPS29-212ENST00000621131 CCDC105Q8IYK2 499 aa5.02□□□□□ -1.61
VPS29-212ENST00000621131 TRIML1Q8N9V2 468 aa5.02□□□□□ -1.61
VPS29-212ENST00000621131 IQUBQ8NA54 791 aa5.02□□□□□ -1.61
VPS29-212ENST00000621131 SMARCE1Q969G3 411 aa5.02□□□□□ -1.61
VPS29-212ENST00000621131 SH3KBP1Q96B97 665 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms