RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 GTF2IRD2Q86UP8 949 aa18.17■□□□□ 0.5
UPF1-210ENST00000600689 LGI2Q8N0V4 545 aa18.17■□□□□ 0.5
UPF1-210ENST00000600689 CALML6Q8TD86 181 aa18.17■□□□□ 0.5
UPF1-210ENST00000600689 NCLNQ969V3 563 aa18.17■□□□□ 0.5
UPF1-210ENST00000600689 PAAF1Q9BRP4 392 aa18.17■□□□□ 0.5
UPF1-210ENST00000600689 HPS4Q9NQG7 708 aa18.17■□□□□ 0.5
UPF1-210ENST00000600689 PSMD11O00231 422 aa18.16■□□□□ 0.5
UPF1-210ENST00000600689 PABPC1P11940 636 aaKnown RBP18.16■□□□□ 0.5
UPF1-210ENST00000600689 GSSP48637 474 aa18.16■□□□□ 0.5
UPF1-210ENST00000600689 ALDH3A2P51648 485 aa18.16■□□□□ 0.5
UPF1-210ENST00000600689 NCS1P62166 190 aa18.16■□□□□ 0.5
UPF1-210ENST00000600689 SIM2Q14190 667 aaPredicted RBP18.16■□□□□ 0.5
UPF1-210ENST00000600689 SEMA3AQ14563 771 aa18.16■□□□□ 0.5
UPF1-210ENST00000600689 IHHQ14623 411 aa18.16■□□□□ 0.5
UPF1-210ENST00000600689 SF3B4Q15427 424 aaKnown RBP eCLIP18.16■□□□□ 0.55e-7■■■■□ 22.3
UPF1-210ENST00000600689 C6orf141Q5SZD1 244 aa18.16■□□□□ 0.5
UPF1-210ENST00000600689 ZNF555Q8NEP9 628 aa18.16■□□□□ 0.5
UPF1-210ENST00000600689 OR2T11Q8NH01 316 aa18.16■□□□□ 0.5
UPF1-210ENST00000600689 SMIM14Q96QK8 99 aa18.16■□□□□ 0.5
UPF1-210ENST00000600689 TRMOQ9BU70 441 aa18.16■□□□□ 0.5
UPF1-210ENST00000600689 AMBRA1Q9C0C7 1298 aa18.16■□□□□ 0.5
UPF1-210ENST00000600689 FAM124BQ9H5Z6 455 aaPredicted RBP18.16■□□□□ 0.5
UPF1-210ENST00000600689 ATP13A3Q9H7F0 1226 aa18.16■□□□□ 0.5
UPF1-210ENST00000600689 UXTQ9UBK9 157 aaPredicted RBP18.16■□□□□ 0.5
UPF1-210ENST00000600689 COMMD10Q9Y6G5 202 aa18.16■□□□□ 0.5
UPF1-210ENST00000600689 PTGESO14684 152 aa18.16■□□□□ 0.5
UPF1-210ENST00000600689 JRKO75564 520 aa18.16■□□□□ 0.5
UPF1-210ENST00000600689 FTH1P02794 183 aa18.16■□□□□ 0.5
UPF1-210ENST00000600689 MTHFD2P13995 350 aa18.16■□□□□ 0.5
UPF1-210ENST00000600689 AASDHQ4L235 1098 aaPredicted RBP18.16■□□□□ 0.5
UPF1-210ENST00000600689 ATP6AP1LQ52LC2 224 aa18.16■□□□□ 0.5
UPF1-210ENST00000600689 PAQR3Q6TCH7 311 aa18.16■□□□□ 0.5
UPF1-210ENST00000600689 SLC16A12Q6ZSM3 486 aa18.16■□□□□ 0.5
UPF1-210ENST00000600689 LPPQ93052 612 aa18.16■□□□□ 0.5
UPF1-210ENST00000600689 CYP2S1Q96SQ9 504 aa18.16■□□□□ 0.5
UPF1-210ENST00000600689 FEM1AQ9BSK4 669 aa18.16■□□□□ 0.5
UPF1-210ENST00000600689 MRGBPQ9NV56 204 aa18.16■□□□□ 0.5
UPF1-210ENST00000600689 GDAP2Q9NXN4 497 aa18.16■□□□□ 0.5
UPF1-210ENST00000600689 UNCXA6NJT0 531 aa18.15■□□□□ 0.5
UPF1-210ENST00000600689 HAS3O00219 553 aa18.15■□□□□ 0.5
UPF1-210ENST00000600689 RHOBTB1O94844 696 aa18.15■□□□□ 0.5
UPF1-210ENST00000600689 GOT2P00505 430 aaKnown RBP18.15■□□□□ 0.5
UPF1-210ENST00000600689 ALPLP05186 524 aa18.15■□□□□ 0.5
UPF1-210ENST00000600689 TCEA1P23193 301 aaKnown RBP18.15■□□□□ 0.5
UPF1-210ENST00000600689 HCAR3P49019 387 aa18.15■□□□□ 0.5
UPF1-210ENST00000600689 MAPRE1Q15691 268 aaKnown RBP18.15■□□□□ 0.5
UPF1-210ENST00000600689 CHDHQ8NE62 594 aaPredicted RBP18.15■□□□□ 0.5
UPF1-210ENST00000600689 CAPSLQ8WWF8 208 aa18.15■□□□□ 0.5
UPF1-210ENST00000600689 RPL3LQ92901 407 aaKnown RBP18.15■□□□□ 0.5
UPF1-210ENST00000600689 MYOCQ99972 504 aa18.15■□□□□ 0.5
UPF1-210ENST00000600689 TRIM54Q9BYV2 358 aa18.15■□□□□ 0.5
UPF1-210ENST00000600689 FAM118AQ9NWS6 357 aa18.15■□□□□ 0.5
UPF1-210ENST00000600689 PAK1IP1Q9NWT1 392 aaPredicted RBP18.15■□□□□ 0.5
UPF1-210ENST00000600689 ASB1Q9Y576 335 aa18.15■□□□□ 0.5
UPF1-210ENST00000600689 PDCD11Q14690 1871 aaKnown RBP18.15■□□□□ 0.5
UPF1-210ENST00000600689 A0A0U1RQS6 177 aa18.15■□□□□ 0.5
UPF1-210ENST00000600689 NPEPPSL1A6NEC2 478 aa18.15■□□□□ 0.5
UPF1-210ENST00000600689 MITFO75030 526 aaPredicted RBP18.15■□□□□ 0.5
UPF1-210ENST00000600689 OR4F21O95013 312 aa18.15■□□□□ 0.5
UPF1-210ENST00000600689 SLC2A3P11169 496 aa18.15■□□□□ 0.5
UPF1-210ENST00000600689 ATP4BP51164 291 aa18.15■□□□□ 0.5
UPF1-210ENST00000600689 HUNKP57058 714 aa18.15■□□□□ 0.5
UPF1-210ENST00000600689 DMPKQ09013 629 aa18.15■□□□□ 0.5
UPF1-210ENST00000600689 FOXD4Q12950 439 aaPredicted RBP18.15■□□□□ 0.5
UPF1-210ENST00000600689 MTA1Q13330 715 aa18.15■□□□□ 0.5
UPF1-210ENST00000600689 INTS6LQ5JSJ4 861 aaKnown RBP18.15■□□□□ 0.5
UPF1-210ENST00000600689 CLIP4Q8N3C7 705 aa18.15■□□□□ 0.5
UPF1-210ENST00000600689 KCTD13Q8WZ19 329 aa18.15■□□□□ 0.5
UPF1-210ENST00000600689 NODALQ96S42 347 aa18.15■□□□□ 0.5
UPF1-210ENST00000600689 CNGB3Q9NQW8 809 aa18.15■□□□□ 0.5
UPF1-210ENST00000600689 WDR70Q9NW82 654 aa18.15■□□□□ 0.5
UPF1-210ENST00000600689 LEF1Q9UJU2 399 aaPredicted RBP18.15■□□□□ 0.5
UPF1-210ENST00000600689 NDUFS2O75306 463 aa18.14■□□□□ 0.5
UPF1-210ENST00000600689 NR4A2P43354 598 aa18.14■□□□□ 0.5
UPF1-210ENST00000600689 CDC42EP1Q00587 391 aa18.14■□□□□ 0.5
UPF1-210ENST00000600689 TAF1CQ15572 869 aaPredicted RBP18.14■□□□□ 0.5
UPF1-210ENST00000600689 NKG7Q16617 165 aa18.14■□□□□ 0.5
UPF1-210ENST00000600689 SDHAF4Q5VUM1 108 aa18.14■□□□□ 0.5
UPF1-210ENST00000600689 SULT1C3Q6IMI6 304 aa18.14■□□□□ 0.5
UPF1-210ENST00000600689 TXNDC11Q6PKC3 985 aa18.14■□□□□ 0.5
UPF1-210ENST00000600689 RNF19BQ6ZMZ0 732 aa18.14■□□□□ 0.5
UPF1-210ENST00000600689 PAGE2Q7Z2X7 111 aa18.14■□□□□ 0.5
UPF1-210ENST00000600689 MILR1Q7Z6M3 343 aa18.14■□□□□ 0.5
UPF1-210ENST00000600689 SYVN1Q86TM6 617 aa18.14■□□□□ 0.5
UPF1-210ENST00000600689 CIR1Q86X95 450 aaPredicted RBP18.14■□□□□ 0.5
UPF1-210ENST00000600689 FAM126BQ8IXS8 530 aa18.14■□□□□ 0.5
UPF1-210ENST00000600689 OR10A6Q8NH74 314 aa18.14■□□□□ 0.5
UPF1-210ENST00000600689 DPF3Q92784 378 aa18.14■□□□□ 0.5
UPF1-210ENST00000600689 L3HYPDHQ96EM0 354 aa18.14■□□□□ 0.5
UPF1-210ENST00000600689 TUBA1CQ9BQE3 449 aa18.14■□□□□ 0.5
UPF1-210ENST00000600689 ATP11BQ9Y2G3 1177 aa18.14■□□□□ 0.5
UPF1-210ENST00000600689 TTC3P53804 2025 aa18.14■□□□□ 0.49
UPF1-210ENST00000600689 C17orf102A2RUQ5 167 aa18.14■□□□□ 0.49
UPF1-210ENST00000600689 UPK1AO00322 258 aa18.14■□□□□ 0.49
UPF1-210ENST00000600689 F9P00740 461 aa18.14■□□□□ 0.49
UPF1-210ENST00000600689 HAPLN1P10915 354 aaPredicted RBP18.14■□□□□ 0.49
UPF1-210ENST00000600689 BMP4P12644 408 aa18.14■□□□□ 0.49
UPF1-210ENST00000600689 POLD2P49005 469 aa18.14■□□□□ 0.49
UPF1-210ENST00000600689 GP2P55259 537 aaKnown RBP18.14■□□□□ 0.49
UPF1-210ENST00000600689 FAM98BQ52LJ0 330 aaKnown RBP18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms