RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 RPLP0P05388 317 aaKnown RBP14.96□□□□□ -0.01
LIG1-219ENST00000600055 F3P13726 295 aa14.96□□□□□ -0.01
LIG1-219ENST00000600055 ATP1B2P14415 290 aaPredicted RBP14.96□□□□□ -0.01
LIG1-219ENST00000600055 RPL10P27635 214 aaKnown RBP14.96□□□□□ -0.01
LIG1-219ENST00000600055 DRG2P55039 364 aaKnown RBP14.96□□□□□ -0.01
LIG1-219ENST00000600055 OR1D5P58170 312 aa14.96□□□□□ -0.01
LIG1-219ENST00000600055 BIRC2Q13490 618 aa14.96□□□□□ -0.01
LIG1-219ENST00000600055 CAMK2BQ13554 666 aa14.96□□□□□ -0.01
LIG1-219ENST00000600055 PTK6Q13882 451 aa14.96□□□□□ -0.01
LIG1-219ENST00000600055 NFE2L1Q14494 772 aa14.96□□□□□ -0.01
LIG1-219ENST00000600055 NLRP9Q7RTR0 991 aa14.96□□□□□ -0.01
LIG1-219ENST00000600055 SPRED1Q7Z699 444 aa14.96□□□□□ -0.01
LIG1-219ENST00000600055 AMZ2Q86W34 360 aa14.96□□□□□ -0.01
LIG1-219ENST00000600055 ZNF761Q86XN6 746 aaPredicted RBP14.96□□□□□ -0.01
LIG1-219ENST00000600055 CCNJLQ8IV13 435 aa14.96□□□□□ -0.01
LIG1-219ENST00000600055 DCBLD1Q8N8Z6 715 aa14.96□□□□□ -0.01
LIG1-219ENST00000600055 NAT8LQ8N9F0 302 aa14.96□□□□□ -0.01
LIG1-219ENST00000600055 OR6P1Q8NGX9 317 aa14.96□□□□□ -0.01
LIG1-219ENST00000600055 SLCO2A1Q92959 643 aa14.96□□□□□ -0.01
LIG1-219ENST00000600055 CNTNAP3BQ96NU0 1288 aa14.96□□□□□ -0.01
LIG1-219ENST00000600055 CNTNAP3Q9BZ76 1288 aa14.96□□□□□ -0.01
LIG1-219ENST00000600055 LRRN3Q9H3W5 708 aa14.96□□□□□ -0.01
LIG1-219ENST00000600055 TREX1Q9NSU2 369 aa14.96□□□□□ -0.01
LIG1-219ENST00000600055 ASIC3Q9UHC3 531 aa14.96□□□□□ -0.01
LIG1-219ENST00000600055 ATXN7L1Q9ULK2 861 aaPredicted RBP14.96□□□□□ -0.01
LIG1-219ENST00000600055 PCDHB1Q9Y5F3 818 aa14.96□□□□□ -0.01
LIG1-219ENST00000600055 PRSS21Q9Y6M0 314 aa14.96□□□□□ -0.01
LIG1-219ENST00000600055 IGLV3-16A0A075B6K0 115 aa14.95□□□□□ -0.02
LIG1-219ENST00000600055 PDZK1P1A8MUH7 402 aa14.95□□□□□ -0.02
LIG1-219ENST00000600055 CFAP99D6REC4 459 aa14.95□□□□□ -0.02
LIG1-219ENST00000600055 AP3B1O00203 1094 aa14.95□□□□□ -0.02
LIG1-219ENST00000600055 CSO75390 466 aaKnown RBP14.95□□□□□ -0.02
LIG1-219ENST00000600055 RALBP11234 206 aa14.95□□□□□ -0.02
LIG1-219ENST00000600055 BRAFP15056 766 aa14.95□□□□□ -0.02
LIG1-219ENST00000600055 PNLIPP16233 465 aa14.95□□□□□ -0.02
LIG1-219ENST00000600055 ALDH4A1P30038 563 aa14.95□□□□□ -0.02
LIG1-219ENST00000600055 SARNPP82979 210 aaKnown RBP14.95□□□□□ -0.02
LIG1-219ENST00000600055 DR1Q01658 176 aa14.95□□□□□ -0.02
LIG1-219ENST00000600055 SPIDRQ14159 915 aa14.95□□□□□ -0.02
LIG1-219ENST00000600055 SEMA3AQ14563 771 aa14.95□□□□□ -0.02
LIG1-219ENST00000600055 BCL7AQ4VC05 210 aa14.95□□□□□ -0.02
LIG1-219ENST00000600055 RNASEH2BQ5TBB1 312 aaKnown RBP14.95□□□□□ -0.02
LIG1-219ENST00000600055 AFTPHQ6ULP2 937 aa14.95□□□□□ -0.02
LIG1-219ENST00000600055 XKR5Q6UX68 686 aa14.95□□□□□ -0.02
LIG1-219ENST00000600055 ZNF438Q7Z4V0 828 aa14.95□□□□□ -0.02
LIG1-219ENST00000600055 CLDN19Q8N6F1 224 aa14.95□□□□□ -0.02
LIG1-219ENST00000600055 MCUQ8NE86 351 aa14.95□□□□□ -0.02
LIG1-219ENST00000600055 OR4L1Q8NH43 312 aa14.95□□□□□ -0.02
LIG1-219ENST00000600055 MFSD3Q96ES6 412 aa14.95□□□□□ -0.02
LIG1-219ENST00000600055 ZNF514Q96K75 400 aaPredicted RBP14.95□□□□□ -0.02
LIG1-219ENST00000600055 C16orf45Q96MC5 204 aaPredicted RBP14.95□□□□□ -0.02
LIG1-219ENST00000600055 SERPINB12Q96P63 405 aa14.95□□□□□ -0.02
LIG1-219ENST00000600055 TRIM56Q9BRZ2 755 aaKnown RBP14.95□□□□□ -0.02
LIG1-219ENST00000600055 TRIM51Q9BSJ1 452 aa14.95□□□□□ -0.02
LIG1-219ENST00000600055 KIFC1Q9BW19 673 aa14.95□□□□□ -0.02
LIG1-219ENST00000600055 RNF14Q9UBS8 474 aa14.95□□□□□ -0.02
LIG1-219ENST00000600055 FAM8A1Q9UBU6 413 aa14.95□□□□□ -0.02
LIG1-219ENST00000600055 SOX13Q9UN79 622 aa14.95□□□□□ -0.02
LIG1-219ENST00000600055 WDR37Q9Y2I8 494 aa14.95□□□□□ -0.02
LIG1-219ENST00000600055 DNMT3AQ9Y6K1 912 aaPredicted RBP14.95□□□□□ -0.02
LIG1-219ENST00000600055 GOLGA4Q13439 2230 aaKnown RBP14.94□□□□□ -0.02
LIG1-219ENST00000600055 PRAMEF33A0A0G2JMD5 474 aa14.94□□□□□ -0.02
LIG1-219ENST00000600055 TRABD2BA6NFA1 517 aa14.94□□□□□ -0.02
LIG1-219ENST00000600055 MGAT4DA6NG13 374 aa14.94□□□□□ -0.02
LIG1-219ENST00000600055 CCDC188H7C350 402 aa14.94□□□□□ -0.02
LIG1-219ENST00000600055 DNALI1O14645 258 aaPredicted RBP14.94□□□□□ -0.02
LIG1-219ENST00000600055 TTI1O43156 1089 aa14.94□□□□□ -0.02
LIG1-219ENST00000600055 VCLP18206 1134 aa14.94□□□□□ -0.02
LIG1-219ENST00000600055 IDSP22304 550 aa14.94□□□□□ -0.02
LIG1-219ENST00000600055 IVDP26440 423 aa14.94□□□□□ -0.02
LIG1-219ENST00000600055 FASLGP48023 281 aa14.94□□□□□ -0.02
LIG1-219ENST00000600055 PRLHRP49683 370 aa14.94□□□□□ -0.02
LIG1-219ENST00000600055 PDX1P52945 283 aa14.94□□□□□ -0.02
LIG1-219ENST00000600055 PRAMEP78395 509 aa14.94□□□□□ -0.02
LIG1-219ENST00000600055 MRPS25P82663 173 aaKnown RBP14.94□□□□□ -0.02
LIG1-219ENST00000600055 HHEXQ03014 270 aa14.94□□□□□ -0.02
LIG1-219ENST00000600055 DMPKQ09013 629 aa14.94□□□□□ -0.02
LIG1-219ENST00000600055 NR1D2Q14995 579 aa14.94□□□□□ -0.02
LIG1-219ENST00000600055 CLCA4Q14CN2 919 aa14.94□□□□□ -0.02
LIG1-219ENST00000600055 AMZ1Q400G9 498 aa14.94□□□□□ -0.02
LIG1-219ENST00000600055 CHCHD2P9Q5T1J5 151 aaPredicted RBP14.94□□□□□ -0.02
LIG1-219ENST00000600055 NKAIN2Q5VXU1 208 aa14.94□□□□□ -0.02
LIG1-219ENST00000600055 UNQ6494/PRO21346Q6UXR6 183 aa14.94□□□□□ -0.02
LIG1-219ENST00000600055 RBM44Q6ZP01 1051 aaKnown RBP14.94□□□□□ -0.02
LIG1-219ENST00000600055 TMPRSS9Q7Z410 1059 aa14.94□□□□□ -0.02
LIG1-219ENST00000600055 LDB1Q86U70 411 aaPredicted RBP14.94□□□□□ -0.02
LIG1-219ENST00000600055 SLC9B2Q86UD5 537 aa14.94□□□□□ -0.02
LIG1-219ENST00000600055 JAMLQ86YT9 394 aa14.94□□□□□ -0.02
LIG1-219ENST00000600055 PPIL6Q8IXY8 311 aa14.94□□□□□ -0.02
LIG1-219ENST00000600055 CACTIN-AS1Q8N1I8 211 aa14.94□□□□□ -0.02
LIG1-219ENST00000600055 AGGF1Q8N302 714 aaeCLIP14.94□□□□□ -0.02
LIG1-219ENST00000600055 LILRA3Q8N6C8 439 aaPredicted RBP14.94□□□□□ -0.02
LIG1-219ENST00000600055 HEXDCQ8WVB3 486 aa14.94□□□□□ -0.02
LIG1-219ENST00000600055 PEX13Q92968 403 aa14.94□□□□□ -0.02
LIG1-219ENST00000600055 DEPDC7Q96QD5 511 aa14.94□□□□□ -0.02
LIG1-219ENST00000600055 GFM1Q96RP9 751 aaKnown RBP14.94□□□□□ -0.02
LIG1-219ENST00000600055 KRT12Q99456 494 aa14.94□□□□□ -0.02
LIG1-219ENST00000600055 MRM3Q9HC36 420 aaKnown RBP14.94□□□□□ -0.02
LIG1-219ENST00000600055 MARCH4Q9P2E8 410 aaPredicted RBP14.94□□□□□ -0.02
LIG1-219ENST00000600055 ZNF624Q9P2J8 865 aaPredicted RBP14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms