RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 AKAP9Q99996 3911 aa13.77□□□□□ -0.2
SHKBP1-218ENST00000598907 A6NCN8 305 aa13.77□□□□□ -0.21
SHKBP1-218ENST00000598907 KCNK1O00180 336 aa13.77□□□□□ -0.21
SHKBP1-218ENST00000598907 KCNN4O15554 427 aa13.77□□□□□ -0.21
SHKBP1-218ENST00000598907 ZW10O43264 779 aa13.77□□□□□ -0.21
SHKBP1-218ENST00000598907 KATNA1O75449 491 aa13.77□□□□□ -0.21
SHKBP1-218ENST00000598907 ECEL1O95672 775 aa13.77□□□□□ -0.21
SHKBP1-218ENST00000598907 CCNB1P14635 433 aa13.77□□□□□ -0.21
SHKBP1-218ENST00000598907 TIMP2P16035 220 aa13.77□□□□□ -0.21
SHKBP1-218ENST00000598907 PTPN3P26045 913 aa13.77□□□□□ -0.21
SHKBP1-218ENST00000598907 RENBPP51606 427 aa13.77□□□□□ -0.21
SHKBP1-218ENST00000598907 GEMIN4P57678 1058 aaKnown RBP13.77□□□□□ -0.21
SHKBP1-218ENST00000598907 SLC10A7Q0GE19 358 aa13.77□□□□□ -0.21
SHKBP1-218ENST00000598907 ZBTB17Q13105 803 aa13.77□□□□□ -0.21
SHKBP1-218ENST00000598907 DHX34Q14147 1143 aaKnown RBP13.77□□□□□ -0.21
SHKBP1-218ENST00000598907 NR6A1Q15406 480 aa13.77□□□□□ -0.21
SHKBP1-218ENST00000598907 CYTH1Q15438 398 aa13.77□□□□□ -0.21
SHKBP1-218ENST00000598907 CLPPQ16740 277 aaPredicted RBP13.77□□□□□ -0.21
SHKBP1-218ENST00000598907 CRTC2Q53ET0 693 aaPredicted RBP13.77□□□□□ -0.21
SHKBP1-218ENST00000598907 TEX44Q53QW1 395 aa13.77□□□□□ -0.21
SHKBP1-218ENST00000598907 TMCO4Q5TGY1 634 aa13.77□□□□□ -0.21
SHKBP1-218ENST00000598907 CEACAM20Q6UY09 585 aa13.77□□□□□ -0.21
SHKBP1-218ENST00000598907 CSMD2Q7Z408 3487 aa13.77□□□□□ -0.21
SHKBP1-218ENST00000598907 MCEMP1Q8IX19 187 aa13.77□□□□□ -0.21
SHKBP1-218ENST00000598907 SLC34A3Q8N130 599 aa13.77□□□□□ -0.21
SHKBP1-218ENST00000598907 CNTD1Q8N815 330 aa13.77□□□□□ -0.21
SHKBP1-218ENST00000598907 FAM71DQ8N9W8 422 aa13.77□□□□□ -0.21
SHKBP1-218ENST00000598907 GLIS1Q8NBF1 620 aa13.77□□□□□ -0.21
SHKBP1-218ENST00000598907 NOA1Q8NC60 698 aaKnown RBP13.77□□□□□ -0.21
SHKBP1-218ENST00000598907 PLA2G15Q8NCC3 412 aa13.77□□□□□ -0.21
SHKBP1-218ENST00000598907 LRRN4CLQ8ND94 238 aa13.77□□□□□ -0.21
SHKBP1-218ENST00000598907 GRK7Q8WTQ7 553 aa13.77□□□□□ -0.21
SHKBP1-218ENST00000598907 VAT1Q99536 393 aa13.77□□□□□ -0.21
SHKBP1-218ENST00000598907 UBA2Q9UBT2 640 aaPredicted RBP13.77□□□□□ -0.21
SHKBP1-218ENST00000598907 AMACRQ9UHK6 382 aa13.77□□□□□ -0.21
SHKBP1-218ENST00000598907 ATP8A1Q9Y2Q0 1164 aa13.77□□□□□ -0.21
SHKBP1-218ENST00000598907 PRRC2CQ9Y520 2896 aaKnown RBP13.77□□□□□ -0.21
SHKBP1-218ENST00000598907 CROCCQ5TZA2 2017 aa13.76□□□□□ -0.21
SHKBP1-218ENST00000598907 DNHD1Q96M86 4753 aa13.76□□□□□ -0.21
SHKBP1-218ENST00000598907 BHMG1C9JSJ3 638 aaPredicted RBP13.76□□□□□ -0.21
SHKBP1-218ENST00000598907 CACNB4O00305 520 aaPredicted RBP13.76□□□□□ -0.21
SHKBP1-218ENST00000598907 SLU7O95391 586 aaKnown RBP13.76□□□□□ -0.21
SHKBP1-218ENST00000598907 JCHAINP01591 159 aa13.76□□□□□ -0.21
SHKBP1-218ENST00000598907 XPAP23025 273 aaPredicted RBP13.76□□□□□ -0.21
SHKBP1-218ENST00000598907 CHAF1BQ13112 559 aa13.76□□□□□ -0.21
SHKBP1-218ENST00000598907 LBRQ14739 615 aaKnown RBP13.76□□□□□ -0.21
SHKBP1-218ENST00000598907 P3H1Q32P28 736 aa13.76□□□□□ -0.21
SHKBP1-218ENST00000598907 MARC1Q5VT66 337 aa13.76□□□□□ -0.21
SHKBP1-218ENST00000598907 GDPD4Q6W3E5 623 aa13.76□□□□□ -0.21
SHKBP1-218ENST00000598907 SYDE1Q6ZW31 735 aaPredicted RBP13.76□□□□□ -0.21
SHKBP1-218ENST00000598907 ZNF761Q86XN6 746 aaPredicted RBP13.76□□□□□ -0.21
SHKBP1-218ENST00000598907 ZNF354CQ86Y25 554 aa13.76□□□□□ -0.21
SHKBP1-218ENST00000598907 ZNF567Q8N184 647 aa13.76□□□□□ -0.21
SHKBP1-218ENST00000598907 ESX1Q8N693 406 aa13.76□□□□□ -0.21
SHKBP1-218ENST00000598907 OR2AP1Q8NGE2 309 aa13.76□□□□□ -0.21
SHKBP1-218ENST00000598907 TEKT5Q96M29 485 aa13.76□□□□□ -0.21
SHKBP1-218ENST00000598907 PSKH2Q96QS6 385 aa13.76□□□□□ -0.21
SHKBP1-218ENST00000598907 MFRPQ9BY79 579 aa13.76□□□□□ -0.21
SHKBP1-218ENST00000598907 TWSG1Q9GZX9 223 aa13.76□□□□□ -0.21
SHKBP1-218ENST00000598907 TRIT1Q9H3H1 467 aaKnown RBP13.76□□□□□ -0.21
SHKBP1-218ENST00000598907 CROTQ9UKG9 612 aa13.76□□□□□ -0.21
SHKBP1-218ENST00000598907 TRHDEQ9UKU6 1024 aa13.76□□□□□ -0.21
SHKBP1-218ENST00000598907 TMEM184BQ9Y519 407 aaPredicted RBP13.76□□□□□ -0.21
SHKBP1-218ENST00000598907 IGHV1OR21-1A0A087WYE8 117 aa13.75□□□□□ -0.21
SHKBP1-218ENST00000598907 FAM187AA6NFU0 413 aa13.75□□□□□ -0.21
SHKBP1-218ENST00000598907 INPP4BO15327 924 aa13.75□□□□□ -0.21
SHKBP1-218ENST00000598907 RAD51CO43502 376 aa13.75□□□□□ -0.21
SHKBP1-218ENST00000598907 DLGAP3O95886 979 aa13.75□□□□□ -0.21
SHKBP1-218ENST00000598907 ETS1P14921 441 aa13.75□□□□□ -0.21
SHKBP1-218ENST00000598907 CD68P34810 354 aaPredicted RBP13.75□□□□□ -0.21
SHKBP1-218ENST00000598907 DR1Q01658 176 aa13.75□□□□□ -0.21
SHKBP1-218ENST00000598907 PTK6Q13882 451 aa13.75□□□□□ -0.21
SHKBP1-218ENST00000598907 NR1D2Q14995 579 aa13.75□□□□□ -0.21
SHKBP1-218ENST00000598907 GLE1Q53GS7 698 aaKnown RBP13.75□□□□□ -0.21
SHKBP1-218ENST00000598907 ANKRD20A2Q5SQ80 823 aa13.75□□□□□ -0.21
SHKBP1-218ENST00000598907 ANKRD20A1Q5TYW2 823 aa13.75□□□□□ -0.21
SHKBP1-218ENST00000598907 ANKRD20A3Q5VUR7 823 aa13.75□□□□□ -0.21
SHKBP1-218ENST00000598907 CPZQ66K79 652 aa13.75□□□□□ -0.21
SHKBP1-218ENST00000598907 ALG1LQ6GMV1 187 aa13.75□□□□□ -0.21
SHKBP1-218ENST00000598907 SLC30A9Q6PML9 568 aa13.75□□□□□ -0.21
SHKBP1-218ENST00000598907 MAATS1Q7Z4T9 603 aa13.75□□□□□ -0.21
SHKBP1-218ENST00000598907 PGBD5Q8N414 524 aa13.75□□□□□ -0.21
SHKBP1-218ENST00000598907 NSMCE1Q8WV22 266 aa13.75□□□□□ -0.21
SHKBP1-218ENST00000598907 FUBP1Q96AE4 644 aaKnown RBP13.75□□□□□ -0.21
SHKBP1-218ENST00000598907 VOPP1Q96AW1 172 aa13.75□□□□□ -0.21
SHKBP1-218ENST00000598907 ISG20Q96AZ6 181 aaKnown RBP13.75□□□□□ -0.21
SHKBP1-218ENST00000598907 POM121Q96HA1 1249 aa13.75□□□□□ -0.21
SHKBP1-218ENST00000598907 SPATA13Q96N96 652 aa13.75□□□□□ -0.21
SHKBP1-218ENST00000598907 FERMT1Q9BQL6 677 aa13.75□□□□□ -0.21
SHKBP1-218ENST00000598907 LRRC1Q9BTT6 524 aa13.75□□□□□ -0.21
SHKBP1-218ENST00000598907 SLC25A23Q9BV35 468 aa13.75□□□□□ -0.21
SHKBP1-218ENST00000598907 OSBPL1AQ9BXW6 950 aa13.75□□□□□ -0.21
SHKBP1-218ENST00000598907 PCDH9Q9HC56 1237 aa13.75□□□□□ -0.21
SHKBP1-218ENST00000598907 SLAMF7Q9NQ25 335 aa13.75□□□□□ -0.21
SHKBP1-218ENST00000598907 RBM22Q9NW64 420 aaKnown RBP eCLIP13.75□□□□□ -0.21
SHKBP1-218ENST00000598907 LHX3Q9UBR4 397 aa13.75□□□□□ -0.21
SHKBP1-218ENST00000598907 ARHGEF17Q96PE2 2063 aaPredicted RBP13.75□□□□□ -0.21
SHKBP1-218ENST00000598907 TTI1O43156 1089 aa13.74□□□□□ -0.21
SHKBP1-218ENST00000598907 TMCC1O94876 653 aa13.74□□□□□ -0.21
SHKBP1-218ENST00000598907 GAS8O95995 478 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms