RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, human

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-217	ENST00000598558	MRFAP1	Q9Y605	127 aa		13.99	□□□□□ -0.17
SHKBP1-217	ENST00000598558	RNF215	Q9Y6U7	377 aa		13.99	□□□□□ -0.17
SHKBP1-217	ENST00000598558	BPTF	Q12830	3046 aa		13.99	□□□□□ -0.17
SHKBP1-217	ENST00000598558	CNOT1	A5YKK6	2376 aa	Known RBP	13.98	□□□□□ -0.17
SHKBP1-217	ENST00000598558	SPEG	Q15772	3267 aa		13.98	□□□□□ -0.17
SHKBP1-217	ENST00000598558	ZCWPW2	A0A1B0GU75	182 aa		13.98	□□□□□ -0.17
SHKBP1-217	ENST00000598558	FAM187A	A6NFU0	413 aa		13.98	□□□□□ -0.17
SHKBP1-217	ENST00000598558	EFCAB8	A8MWE9	144 aa		13.98	□□□□□ -0.17
SHKBP1-217	ENST00000598558	AP3B1	O00203	1094 aa		13.98	□□□□□ -0.17
SHKBP1-217	ENST00000598558	PPM1D	O15297	605 aa		13.98	□□□□□ -0.17
SHKBP1-217	ENST00000598558	RFPL3	O75679	317 aa		13.98	□□□□□ -0.17
SHKBP1-217	ENST00000598558	VAPB	O95292	243 aa		13.98	□□□□□ -0.17
SHKBP1-217	ENST00000598558	ATP1B2	P14415	290 aa	Predicted RBP	13.98	□□□□□ -0.17
SHKBP1-217	ENST00000598558	DHX9	Q08211	1270 aa	Known RBP	13.98	□□□□□ -0.17
SHKBP1-217	ENST00000598558	LAMB3	Q13751	1172 aa		13.98	□□□□□ -0.17
SHKBP1-217	ENST00000598558	INSC	Q1MX18	579 aa		13.98	□□□□□ -0.17
SHKBP1-217	ENST00000598558	ZNF658B	Q4V348	819 aa	Predicted RBP	13.98	□□□□□ -0.17
SHKBP1-217	ENST00000598558	BCL7A	Q4VC05	210 aa		13.98	□□□□□ -0.17
SHKBP1-217	ENST00000598558	C14orf28	Q4W4Y0	310 aa		13.98	□□□□□ -0.17
SHKBP1-217	ENST00000598558	HP1BP3	Q5SSJ5	553 aa	Predicted RBP	13.98	□□□□□ -0.17
SHKBP1-217	ENST00000598558	DUPD1	Q68J44	220 aa		13.98	□□□□□ -0.17
SHKBP1-217	ENST00000598558	IYD	Q6PHW0	289 aa		13.98	□□□□□ -0.17
SHKBP1-217	ENST00000598558	AFTPH	Q6ULP2	937 aa		13.98	□□□□□ -0.17
SHKBP1-217	ENST00000598558	TMEM135	Q86UB9	458 aa		13.98	□□□□□ -0.17
SHKBP1-217	ENST00000598558	HOOK3	Q86VS8	718 aa		13.98	□□□□□ -0.17
SHKBP1-217	ENST00000598558	UNC5B	Q8IZJ1	945 aa		13.98	□□□□□ -0.17
SHKBP1-217	ENST00000598558	PEX13	Q92968	403 aa		13.98	□□□□□ -0.17
SHKBP1-217	ENST00000598558	CCDC74A	Q96AQ1	378 aa		13.98	□□□□□ -0.17
SHKBP1-217	ENST00000598558	SGSM3	Q96HU1	749 aa		13.98	□□□□□ -0.17
SHKBP1-217	ENST00000598558	TTC25	Q96NG3	672 aa		13.98	□□□□□ -0.17
SHKBP1-217	ENST00000598558	ERP44	Q9BS26	406 aa		13.98	□□□□□ -0.17
SHKBP1-217	ENST00000598558	TIMM29	Q9BSF4	260 aa		13.98	□□□□□ -0.17
SHKBP1-217	ENST00000598558	DPH5	Q9H2P9	285 aa		13.98	□□□□□ -0.17
SHKBP1-217	ENST00000598558	GRHL1	Q9NZI5	618 aa		13.98	□□□□□ -0.17
SHKBP1-217	ENST00000598558	WDR37	Q9Y2I8	494 aa		13.98	□□□□□ -0.17
SHKBP1-217	ENST00000598558	PCDHGA1	Q9Y5H4	931 aa		13.98	□□□□□ -0.17
SHKBP1-217	ENST00000598558	CACNA1A	O00555	2505 aa		13.98	□□□□□ -0.17
SHKBP1-217	ENST00000598558	FAM237B	A0A1B0GVD1	139 aa		13.97	□□□□□ -0.17
SHKBP1-217	ENST00000598558	B4GAT1	O43505	415 aa		13.97	□□□□□ -0.17
SHKBP1-217	ENST00000598558	OPA1	O60313	960 aa		13.97	□□□□□ -0.17
SHKBP1-217	ENST00000598558	PBLD	P30039	288 aa	Predicted RBP	13.97	□□□□□ -0.17
SHKBP1-217	ENST00000598558	DUSP3	P51452	185 aa	Predicted RBP	13.97	□□□□□ -0.17
SHKBP1-217	ENST00000598558	DRG2	P55039	364 aa	Known RBP	13.97	□□□□□ -0.17
SHKBP1-217	ENST00000598558	PRAME	P78395	509 aa		13.97	□□□□□ -0.17
SHKBP1-217	ENST00000598558	INSM1	Q01101	510 aa	Predicted RBP	13.97	□□□□□ -0.17
SHKBP1-217	ENST00000598558	GTF2H3	Q13889	308 aa		13.97	□□□□□ -0.17
SHKBP1-217	ENST00000598558	NFE2L1	Q14494	772 aa		13.97	□□□□□ -0.17
SHKBP1-217	ENST00000598558	CLCA4	Q14CN2	919 aa		13.97	□□□□□ -0.17
SHKBP1-217	ENST00000598558	MORF4L2	Q15014	288 aa		13.97	□□□□□ -0.17
SHKBP1-217	ENST00000598558	WHAMMP3	Q1A5X7	153 aa		13.97	□□□□□ -0.17
SHKBP1-217	ENST00000598558	PCGF5	Q86SE9	256 aa		13.97	□□□□□ -0.17
SHKBP1-217	ENST00000598558	SPNS2	Q8IVW8	549 aa		13.97	□□□□□ -0.17
SHKBP1-217	ENST00000598558	NOA1	Q8NC60	698 aa	Known RBP	13.97	□□□□□ -0.17
SHKBP1-217	ENST00000598558	SLC37A2	Q8TED4	501 aa		13.97	□□□□□ -0.17
SHKBP1-217	ENST00000598558	SNF8	Q96H20	258 aa		13.97	□□□□□ -0.17
SHKBP1-217	ENST00000598558	LRRC1	Q9BTT6	524 aa		13.97	□□□□□ -0.17
SHKBP1-217	ENST00000598558	LRIT1	Q9P2V4	623 aa		13.97	□□□□□ -0.17
SHKBP1-217	ENST00000598558	ANAPC5	Q9UJX4	755 aa		13.97	□□□□□ -0.17
SHKBP1-217	ENST00000598558	KLK13	Q9UKR3	277 aa		13.97	□□□□□ -0.17
SHKBP1-217	ENST00000598558	SPTBN2	O15020	2390 aa		13.97	□□□□□ -0.17
SHKBP1-217	ENST00000598558	FAM149A	A5PLN7	773 aa		13.96	□□□□□ -0.17
SHKBP1-217	ENST00000598558	CD3EAP	O15446	510 aa	Known RBP	13.96	□□□□□ -0.17
SHKBP1-217	ENST00000598558	TUBB4A	P04350	444 aa		13.96	□□□□□ -0.17
SHKBP1-217	ENST00000598558	RPL10	P27635	214 aa	Known RBP	13.96	□□□□□ -0.17
SHKBP1-217	ENST00000598558	SLC19A1	P41440	591 aa		13.96	□□□□□ -0.17
SHKBP1-217	ENST00000598558	PRLHR	P49683	370 aa		13.96	□□□□□ -0.17
SHKBP1-217	ENST00000598558	SLC7A5	Q01650	507 aa		13.96	□□□□□ -0.17
SHKBP1-217	ENST00000598558	DMPK	Q09013	629 aa		13.96	□□□□□ -0.17
SHKBP1-217	ENST00000598558	SEPT7	Q16181	437 aa	Known RBP	13.96	□□□□□ -0.17
SHKBP1-217	ENST00000598558	BBS9	Q3SYG4	887 aa		13.96	□□□□□ -0.17
SHKBP1-217	ENST00000598558	FASTKD1	Q53R41	847 aa	Known RBP	13.96	□□□□□ -0.17
SHKBP1-217	ENST00000598558	ZNF789	Q5FWF6	425 aa		13.96	□□□□□ -0.17
SHKBP1-217	ENST00000598558	KIAA0930	Q6ICG6	404 aa	Predicted RBP	13.96	□□□□□ -0.17
SHKBP1-217	ENST00000598558	CASC4	Q6P4E1	433 aa		13.96	□□□□□ -0.17
SHKBP1-217	ENST00000598558	NAPRT	Q6XQN6	538 aa		13.96	□□□□□ -0.17
SHKBP1-217	ENST00000598558	MAATS1	Q7Z4T9	603 aa		13.96	□□□□□ -0.17
SHKBP1-217	ENST00000598558	AMZ2	Q86W34	360 aa		13.96	□□□□□ -0.17
SHKBP1-217	ENST00000598558	ZNF761	Q86XN6	746 aa	Predicted RBP	13.96	□□□□□ -0.17
SHKBP1-217	ENST00000598558	SFRP1	Q8N474	314 aa		13.96	□□□□□ -0.17
SHKBP1-217	ENST00000598558		Q8N9G6	341 aa	Predicted RBP	13.96	□□□□□ -0.17
SHKBP1-217	ENST00000598558	GLMN	Q92990	594 aa		13.96	□□□□□ -0.17
SHKBP1-217	ENST00000598558	ZNF669	Q96BR6	464 aa	Predicted RBP	13.96	□□□□□ -0.17
SHKBP1-217	ENST00000598558	DCUN1D1	Q96GG9	259 aa		13.96	□□□□□ -0.17
SHKBP1-217	ENST00000598558	LINC00615	Q96LM1	132 aa	Predicted RBP	13.96	□□□□□ -0.17
SHKBP1-217	ENST00000598558	CCDC3	Q9BQI4	270 aa		13.96	□□□□□ -0.17
SHKBP1-217	ENST00000598558	SCNM1	Q9BWG6	230 aa		13.96	□□□□□ -0.17
SHKBP1-217	ENST00000598558	ZCCHC2	Q9C0B9	1178 aa	Known RBP	13.96	□□□□□ -0.17
SHKBP1-217	ENST00000598558	OSGEPL1	Q9H4B0	414 aa		13.96	□□□□□ -0.17
SHKBP1-217	ENST00000598558	CATSPERZ	Q9NTU4	200 aa		13.96	□□□□□ -0.17
SHKBP1-217	ENST00000598558	ZNF624	Q9P2J8	865 aa	Predicted RBP	13.96	□□□□□ -0.17
SHKBP1-217	ENST00000598558	FAM8A1	Q9UBU6	413 aa		13.96	□□□□□ -0.17
SHKBP1-217	ENST00000598558	MAD1L1	Q9Y6D9	718 aa		13.96	□□□□□ -0.17
SHKBP1-217	ENST00000598558	DNMT3A	Q9Y6K1	912 aa	Predicted RBP	13.96	□□□□□ -0.17
SHKBP1-217	ENST00000598558	RPS6KL1	Q9Y6S9	549 aa		13.96	□□□□□ -0.17
SHKBP1-217	ENST00000598558	PLXNB3	Q9ULL4	1909 aa		13.96	□□□□□ -0.18
SHKBP1-217	ENST00000598558	ZNF106	Q9H2Y7	1883 aa	Known RBP	13.95	□□□□□ -0.18
SHKBP1-217	ENST00000598558		A0A1W2PQM1	296 aa		13.95	□□□□□ -0.18
SHKBP1-217	ENST00000598558	MAGEB16	A2A368	324 aa		13.95	□□□□□ -0.18
SHKBP1-217	ENST00000598558	MGAT4D	A6NG13	374 aa		13.95	□□□□□ -0.18
SHKBP1-217	ENST00000598558	IQCF5	A8MTL0	148 aa		13.95	□□□□□ -0.18

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