RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 AGPAT1Q99943 283 aa9.94□□□□□ -0.82
TRIM28-210ENST00000597618 TUBB2BQ9BVA1 445 aa9.94□□□□□ -0.82
TRIM28-210ENST00000597618 ILKAPQ9H0C8 392 aaPredicted RBP9.94□□□□□ -0.82
TRIM28-210ENST00000597618 CHST8Q9H2A9 424 aa9.94□□□□□ -0.82
TRIM28-210ENST00000597618 RUBCNLQ9H714 662 aa9.94□□□□□ -0.82
TRIM28-210ENST00000597618 TRIM39Q9HCM9 518 aa9.94□□□□□ -0.82
TRIM28-210ENST00000597618 HAUS2Q9NVX0 235 aa9.94□□□□□ -0.82
TRIM28-210ENST00000597618 TAB2Q9NYJ8 693 aa9.94□□□□□ -0.82
TRIM28-210ENST00000597618 DNAJC16Q9Y2G8 782 aa9.94□□□□□ -0.82
TRIM28-210ENST00000597618 TLCD2A6NGC4 264 aa9.93□□□□□ -0.82
TRIM28-210ENST00000597618 SLC25A14O95258 325 aaPredicted RBP9.93□□□□□ -0.82
TRIM28-210ENST00000597618 ALPPP05187 535 aa9.93□□□□□ -0.82
TRIM28-210ENST00000597618 TPM2P07951 284 aa9.93□□□□□ -0.82
TRIM28-210ENST00000597618 BRAFP15056 766 aa9.93□□□□□ -0.82
TRIM28-210ENST00000597618 ZNF7P17097 686 aaPredicted RBP9.93□□□□□ -0.82
TRIM28-210ENST00000597618 IDSP22304 550 aa9.93□□□□□ -0.82
TRIM28-210ENST00000597618 RPL10P27635 214 aaKnown RBP9.93□□□□□ -0.82
TRIM28-210ENST00000597618 PPP1CAP62136 330 aa9.93□□□□□ -0.82
TRIM28-210ENST00000597618 HSD11B2P80365 405 aa9.93□□□□□ -0.82
TRIM28-210ENST00000597618 DPYSL2Q16555 572 aa9.93□□□□□ -0.82
TRIM28-210ENST00000597618 DNTTIP2Q5QJE6 756 aaKnown RBP9.93□□□□□ -0.82
TRIM28-210ENST00000597618 FKBP15Q5T1M5 1219 aa9.93□□□□□ -0.82
TRIM28-210ENST00000597618 LYPLAL1Q5VWZ2 237 aa9.93□□□□□ -0.82
TRIM28-210ENST00000597618 PDPK2PQ6A1A2 396 aa9.93□□□□□ -0.82
TRIM28-210ENST00000597618 ALG1LQ6GMV1 187 aa9.93□□□□□ -0.82
TRIM28-210ENST00000597618 PLEKHA7Q6IQ23 1121 aa9.93□□□□□ -0.82
TRIM28-210ENST00000597618 ADGRG6Q86SQ4 1221 aa9.93□□□□□ -0.82
TRIM28-210ENST00000597618 LRRTM4Q86VH4 590 aa9.93□□□□□ -0.82
TRIM28-210ENST00000597618 LRRC49Q8IUZ0 686 aa9.93□□□□□ -0.82
TRIM28-210ENST00000597618 D2HGDHQ8N465 521 aa9.93□□□□□ -0.82
TRIM28-210ENST00000597618 SGSM3Q96HU1 749 aa9.93□□□□□ -0.82
TRIM28-210ENST00000597618 CSPG4P5Q96PW8 444 aa9.93□□□□□ -0.82
TRIM28-210ENST00000597618 RANBP9Q96S59 729 aa9.93□□□□□ -0.82
TRIM28-210ENST00000597618 BARD1Q99728 777 aaKnown RBP9.93□□□□□ -0.82
TRIM28-210ENST00000597618 ZSCAN5AQ9BUG6 496 aa9.93□□□□□ -0.82
TRIM28-210ENST00000597618 MLPHQ9BV36 600 aaPredicted RBP9.93□□□□□ -0.82
TRIM28-210ENST00000597618 NLNQ9BYT8 704 aa9.93□□□□□ -0.82
TRIM28-210ENST00000597618 UNKQ9C0B0 810 aaKnown RBP9.93□□□□□ -0.82
TRIM28-210ENST00000597618 ARFGAP3Q9NP61 516 aa9.93□□□□□ -0.82
TRIM28-210ENST00000597618 SAMSN1Q9NSI8 373 aaKnown RBP9.93□□□□□ -0.82
TRIM28-210ENST00000597618 ETNK2Q9NVF9 386 aa9.93□□□□□ -0.82
TRIM28-210ENST00000597618 SLC23A2Q9UGH3 650 aa9.93□□□□□ -0.82
TRIM28-210ENST00000597618 TCFL5Q9UL49 500 aa9.93□□□□□ -0.82
TRIM28-210ENST00000597618 CHKBQ9Y259 395 aa9.93□□□□□ -0.82
TRIM28-210ENST00000597618 COPG1Q9Y678 874 aaKnown RBP9.93□□□□□ -0.82
TRIM28-210ENST00000597618 TACC2O95359 2948 aa9.93□□□□□ -0.82
TRIM28-210ENST00000597618 UBA6A0AVT1 1052 aaPredicted RBP9.92□□□□□ -0.82
TRIM28-210ENST00000597618 HEATR9A2RTY3 570 aa9.92□□□□□ -0.82
TRIM28-210ENST00000597618 TMEM191CA6NGB0 347 aa9.92□□□□□ -0.82
TRIM28-210ENST00000597618 MEN1O00255 615 aa9.92□□□□□ -0.82
TRIM28-210ENST00000597618 VEGFDO43915 354 aa9.92□□□□□ -0.82
TRIM28-210ENST00000597618 KLHL41O60662 606 aa9.92□□□□□ -0.82
TRIM28-210ENST00000597618 PRLP01236 227 aa9.92□□□□□ -0.82
TRIM28-210ENST00000597618 VCLP18206 1134 aa9.92□□□□□ -0.82
TRIM28-210ENST00000597618 FECHP22830 423 aa9.92□□□□□ -0.82
TRIM28-210ENST00000597618 AMPD1P23109 780 aa9.92□□□□□ -0.82
TRIM28-210ENST00000597618 HALP42357 657 aa9.92□□□□□ -0.82
TRIM28-210ENST00000597618 DRG2P55039 364 aaKnown RBP9.92□□□□□ -0.82
TRIM28-210ENST00000597618 DCDC1P59894 354 aa9.92□□□□□ -0.82
TRIM28-210ENST00000597618 DSC2Q02487 901 aa9.92□□□□□ -0.82
TRIM28-210ENST00000597618 RAPSNQ13702 412 aa9.92□□□□□ -0.82
TRIM28-210ENST00000597618 ATP1A4Q13733 1029 aa9.92□□□□□ -0.82
TRIM28-210ENST00000597618 KYNUQ16719 465 aa9.92□□□□□ -0.82
TRIM28-210ENST00000597618 DPCR1Q3MIW9 517 aa9.92□□□□□ -0.82
TRIM28-210ENST00000597618 ZNF648Q5T619 568 aaPredicted RBP9.92□□□□□ -0.82
TRIM28-210ENST00000597618 POLNQ7Z5Q5 900 aa9.92□□□□□ -0.82
TRIM28-210ENST00000597618 ZC3H18Q86VM9 953 aaKnown RBP9.92□□□□□ -0.82
TRIM28-210ENST00000597618 RAB43Q86YS6 212 aa9.92□□□□□ -0.82
TRIM28-210ENST00000597618 MCEMP1Q8IX19 187 aa9.92□□□□□ -0.82
TRIM28-210ENST00000597618 DSELQ8IZU8 1212 aa9.92□□□□□ -0.82
TRIM28-210ENST00000597618 ZBTB2Q8N680 514 aa9.92□□□□□ -0.82
TRIM28-210ENST00000597618 ST6GALNAC3Q8NDV1 305 aa9.92□□□□□ -0.82
TRIM28-210ENST00000597618 UBE2Q2Q8WVN8 375 aa9.92□□□□□ -0.82
TRIM28-210ENST00000597618 CPT1BQ92523 772 aa9.92□□□□□ -0.82
TRIM28-210ENST00000597618 TM9SF4Q92544 642 aa9.92□□□□□ -0.82
TRIM28-210ENST00000597618 GLYATL1Q969I3 302 aa9.92□□□□□ -0.82
TRIM28-210ENST00000597618 MAP3K3Q99759 626 aa9.92□□□□□ -0.82
TRIM28-210ENST00000597618 SPATA16Q9BXB7 569 aa9.92□□□□□ -0.82
TRIM28-210ENST00000597618 PCDH9Q9HC56 1237 aa9.92□□□□□ -0.82
TRIM28-210ENST00000597618 LATS2Q9NRM7 1088 aa9.92□□□□□ -0.82
TRIM28-210ENST00000597618 AGPAT4Q9NRZ5 378 aa9.92□□□□□ -0.82
TRIM28-210ENST00000597618 KCND1Q9NSA2 647 aa9.92□□□□□ -0.82
TRIM28-210ENST00000597618 AMACRQ9UHK6 382 aa9.92□□□□□ -0.82
TRIM28-210ENST00000597618 TTLL3Q9Y4R7 772 aa9.92□□□□□ -0.82
TRIM28-210ENST00000597618 DIDO1Q9BTC0 2240 aaKnown RBP9.92□□□□□ -0.82
TRIM28-210ENST00000597618 LRRTM2O43300 516 aa9.91□□□□□ -0.82
TRIM28-210ENST00000597618 ATMINO43313 823 aaPredicted RBP9.91□□□□□ -0.82
TRIM28-210ENST00000597618 ZBTB11O95625 1053 aaPredicted RBP9.91□□□□□ -0.82
TRIM28-210ENST00000597618 CCDC172P0C7W6 258 aa9.91□□□□□ -0.82
TRIM28-210ENST00000597618 IL4RP24394 825 aa9.91□□□□□ -0.82
TRIM28-210ENST00000597618 PCK1P35558 622 aa9.91□□□□□ -0.82
TRIM28-210ENST00000597618 IHHQ14623 411 aa9.91□□□□□ -0.82
TRIM28-210ENST00000597618 PLCL1Q15111 1095 aa9.91□□□□□ -0.82
TRIM28-210ENST00000597618 ZRSR2Q15696 482 aaKnown RBP9.91□□□□□ -0.82
TRIM28-210ENST00000597618 GPR19Q15760 415 aa9.91□□□□□ -0.82
TRIM28-210ENST00000597618 SMTNL2Q2TAL5 461 aa9.91□□□□□ -0.82
TRIM28-210ENST00000597618 PLEKHS1Q5SXH7 462 aa9.91□□□□□ -0.82
TRIM28-210ENST00000597618 TMTC4Q5T4D3 741 aa9.91□□□□□ -0.82
TRIM28-210ENST00000597618 ALS2CLQ60I27 953 aa9.91□□□□□ -0.82
TRIM28-210ENST00000597618 TIGD7Q6NT04 549 aaPredicted RBP9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms