RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 POP7O75817 140 aaKnown RBP9.74□□□□□ -0.85
LIG3-216ENST00000593099 IPO13O94829 963 aaKnown RBP9.74□□□□□ -0.85
LIG3-216ENST00000593099 THRAP10827 490 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 IL10P22301 178 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 EEF1DP29692 281 aaKnown RBP9.74□□□□□ -0.85
LIG3-216ENST00000593099 PGM1P36871 562 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 GALK1P51570 392 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 NRG1Q02297 640 aaPredicted RBP9.74□□□□□ -0.85
LIG3-216ENST00000593099 RASA2Q15283 850 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 CPSF6Q16630 551 aaKnown RBP eCLIP9.74□□□□□ -0.85
LIG3-216ENST00000593099 RAB6CQ53S08 254 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 CEP78Q5JTW2 689 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 GKN2Q86XP6 184 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 SYT12Q8IV01 421 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 CPNE9Q8IYJ1 553 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 TNIP2Q8NFZ5 429 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 RAB11FIP5Q9BXF6 653 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 RAB6CQ9H0N0 254 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 MAGEE1Q9HCI5 957 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 CCDC177Q9NQR7 707 aaPredicted RBP9.74□□□□□ -0.85
LIG3-216ENST00000593099 ARPC4-TTLL3A0A0A6YYG9 625 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 CPED1A4D0V7 1026 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 DRGXA6NNA5 263 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 E9PBE3 544 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 H0Y858 1186 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 FFAR3O14843 346 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 GPR42O15529 346 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 KLHL41O60662 606 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 FAM107AO95990 144 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 ITPKAP23677 461 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 HPCAL1P37235 193 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 HNRNPA1L2Q32P51 320 aaKnown RBP9.73□□□□□ -0.85
LIG3-216ENST00000593099 IRGCQ6NXR0 463 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 ZC3H14Q6PJT7 736 aaKnown RBP9.73□□□□□ -0.85
LIG3-216ENST00000593099 EFCAB3Q8N7B9 438 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 MAFAQ8NHW3 353 aaPredicted RBP9.73□□□□□ -0.85
LIG3-216ENST00000593099 RPLP0P6Q8NHW5 317 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 MTFMTQ96DP5 389 aaKnown RBP9.73□□□□□ -0.85
LIG3-216ENST00000593099 MSANTD3Q96H12 275 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 SEC16BQ96JE7 1060 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 ZNF180Q9UJW8 692 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 MRPS33Q9Y291 106 aaKnown RBP9.73□□□□□ -0.85
LIG3-216ENST00000593099 CASP8AP2Q9UKL3 1982 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 OR51F1A6NGY5 319 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 B4DGG1 531 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 KMOO15229 486 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 MTX2O75431 263 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 GLDCP23378 1020 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 RPL14P50914 215 aaKnown RBP9.73□□□□□ -0.85
LIG3-216ENST00000593099 SPIDRQ14159 915 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 ZNF234Q14588 700 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 INPP5AQ14642 412 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 RSPO2Q6UXX9 243 aaPredicted RBP9.73□□□□□ -0.85
LIG3-216ENST00000593099 CDYL2Q8N8U2 506 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 TRMOQ9BU70 441 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 IRAK3Q9Y616 596 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 MID1O15344 667 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 FKBP9O95302 570 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 SEMA4FO95754 770 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 LMNAP02545 664 aaKnown RBP9.73□□□□□ -0.85
LIG3-216ENST00000593099 NCALDP61601 193 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 MRPS21P82921 87 aaKnown RBP9.73□□□□□ -0.85
LIG3-216ENST00000593099 ZNF252P-AS1Q0IIN9 211 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 AASDHQ4L235 1098 aaPredicted RBP9.73□□□□□ -0.85
LIG3-216ENST00000593099 CHSY3Q70JA7 882 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 FKBP9P1Q75LS8 142 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 SLC44A2Q8IWA5 706 aaPredicted RBP9.73□□□□□ -0.85
LIG3-216ENST00000593099 ST13P4Q8IZP2 240 aaPredicted RBP9.73□□□□□ -0.85
LIG3-216ENST00000593099 CYP4X1Q8N118 509 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 C2orf73Q8N5S3 287 aaPredicted RBP9.73□□□□□ -0.85
LIG3-216ENST00000593099 SETD7Q8WTS6 366 aaKnown RBP9.73□□□□□ -0.85
LIG3-216ENST00000593099 ZNF75CPQ92670 426 aaPredicted RBP9.73□□□□□ -0.85
LIG3-216ENST00000593099 PCBD2Q9H0N5 130 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 EFCAB1Q9HAE3 211 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 NUDT4Q9NZJ9 180 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 TRPC4Q9UBN4 977 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 MCM8Q9UJA3 840 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 A0A0J9YYE9 177 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 B2RBV5 119 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 H3BQF6 201 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 APBB3O95704 486 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 TRBC1P01850 177 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 CD72P21854 359 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 SLC6A4P31645 630 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 SLC1A2P43004 574 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 TAS2R39P59534 338 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 ACTN3Q08043 901 aaPredicted RBP9.73□□□□□ -0.85
LIG3-216ENST00000593099 KCNJ11Q14654 390 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 NDUFA9Q16795 377 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 AGKQ53H12 422 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 LIPMQ5VYY2 423 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 SLC36A4Q6YBV0 504 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 ZNF614Q8N883 585 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 LMX1AQ8TE12 382 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 CCM2Q9BSQ5 444 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 ATG10Q9H0Y0 220 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 GRHL1Q9NZI5 618 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 GPN3Q9UHW5 284 aaPredicted RBP9.73□□□□□ -0.85
LIG3-216ENST00000593099 DTNAQ9Y4J8 743 aa9.73□□□□□ -0.85
LIG3-216ENST00000593099 NR5A2O00482 541 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms