RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 NR1D2Q14995 579 aa11.71□□□□□ -0.53
LIG3-213ENST00000590630 KCTD19Q17RG1 926 aaPredicted RBP11.71□□□□□ -0.53
LIG3-213ENST00000590630 BCL7AQ4VC05 210 aa11.71□□□□□ -0.53
LIG3-213ENST00000590630 FNBP1LQ5T0N5 605 aa11.71□□□□□ -0.53
LIG3-213ENST00000590630 LYPLAL1Q5VWZ2 237 aa11.71□□□□□ -0.53
LIG3-213ENST00000590630 ANKRD22Q5VYY1 191 aa11.71□□□□□ -0.53
LIG3-213ENST00000590630 IYDQ6PHW0 289 aa11.71□□□□□ -0.53
LIG3-213ENST00000590630 TMEM220Q6QAJ8 160 aa11.71□□□□□ -0.53
LIG3-213ENST00000590630 WASH2PQ6VEQ5 465 aa11.71□□□□□ -0.53
LIG3-213ENST00000590630 SYT10Q6XYQ8 523 aa11.71□□□□□ -0.53
LIG3-213ENST00000590630 CERS6Q6ZMG9 384 aa11.71□□□□□ -0.53
LIG3-213ENST00000590630 TAS2R42Q7RTR8 314 aa11.71□□□□□ -0.53
LIG3-213ENST00000590630 SPRED1Q7Z699 444 aa11.71□□□□□ -0.53
LIG3-213ENST00000590630 SERPINA9Q86WD7 417 aa11.71□□□□□ -0.53
LIG3-213ENST00000590630 CCNJLQ8IV13 435 aa11.71□□□□□ -0.53
LIG3-213ENST00000590630 PPIL6Q8IXY8 311 aa11.71□□□□□ -0.53
LIG3-213ENST00000590630 SLC37A2Q8TED4 501 aa11.71□□□□□ -0.53
LIG3-213ENST00000590630 PATE1Q8WXA2 126 aa11.71□□□□□ -0.53
LIG3-213ENST00000590630 HDAC10Q969S8 669 aa11.71□□□□□ -0.53
LIG3-213ENST00000590630 TBRG4Q969Z0 631 aaKnown RBP eCLIP11.71□□□□□ -0.53
LIG3-213ENST00000590630 GRAMD1AQ96CP6 724 aa11.71□□□□□ -0.53
LIG3-213ENST00000590630 SGF29Q96ES7 293 aa11.71□□□□□ -0.53
LIG3-213ENST00000590630 ZNF778Q96MU6 729 aa11.71□□□□□ -0.53
LIG3-213ENST00000590630 DEPDC7Q96QD5 511 aa11.71□□□□□ -0.53
LIG3-213ENST00000590630 TTC1Q99614 292 aa11.71□□□□□ -0.53
LIG3-213ENST00000590630 KIFC1Q9BW19 673 aa11.71□□□□□ -0.53
LIG3-213ENST00000590630 FAM96AQ9H5X1 160 aa11.71□□□□□ -0.53
LIG3-213ENST00000590630 STN1Q9H668 368 aaKnown RBP11.71□□□□□ -0.53
LIG3-213ENST00000590630 MRM3Q9HC36 420 aaKnown RBP11.71□□□□□ -0.53
LIG3-213ENST00000590630 WASH6PQ9NQA3 447 aa11.71□□□□□ -0.53
LIG3-213ENST00000590630 CHRAC1Q9NRG0 131 aa11.71□□□□□ -0.53
LIG3-213ENST00000590630 ZDHHC3Q9NYG2 299 aa11.71□□□□□ -0.53
LIG3-213ENST00000590630 SLC2A6Q9UGQ3 507 aa11.71□□□□□ -0.53
LIG3-213ENST00000590630 ASIC3Q9UHC3 531 aa11.71□□□□□ -0.53
LIG3-213ENST00000590630 RABGEF1Q9UJ41 708 aa11.71□□□□□ -0.53
LIG3-213ENST00000590630 DNAJC16Q9Y2G8 782 aa11.71□□□□□ -0.53
LIG3-213ENST00000590630 ZZEF1O43149 2961 aa11.7□□□□□ -0.54
LIG3-213ENST00000590630 ACACAQ13085 2346 aa11.7□□□□□ -0.54
LIG3-213ENST00000590630 EPG5Q9HCE0 2579 aa11.7□□□□□ -0.54
LIG3-213ENST00000590630 NTN3O00634 580 aaPredicted RBP11.7□□□□□ -0.54
LIG3-213ENST00000590630 SNX2O60749 519 aa11.7□□□□□ -0.54
LIG3-213ENST00000590630 POP7O75817 140 aaKnown RBP11.7□□□□□ -0.54
LIG3-213ENST00000590630 EML2O95834 649 aa11.7□□□□□ -0.54
LIG3-213ENST00000590630 RPLP0P05388 317 aaKnown RBP11.7□□□□□ -0.54
LIG3-213ENST00000590630 IDSP22304 550 aa11.7□□□□□ -0.54
LIG3-213ENST00000590630 MGAT1P26572 445 aa11.7□□□□□ -0.54
LIG3-213ENST00000590630 FOXN2P32314 431 aa11.7□□□□□ -0.54
LIG3-213ENST00000590630 PTGIRP43119 386 aa11.7□□□□□ -0.54
LIG3-213ENST00000590630 PRLHRP49683 370 aa11.7□□□□□ -0.54
LIG3-213ENST00000590630 CDKN1CP49918 316 aaPredicted RBP11.7□□□□□ -0.54
LIG3-213ENST00000590630 TERF1P54274 439 aa11.7□□□□□ -0.54
LIG3-213ENST00000590630 CLDN6P56747 220 aa11.7□□□□□ -0.54
LIG3-213ENST00000590630 CRADDP78560 199 aa11.7□□□□□ -0.54
LIG3-213ENST00000590630 DR1Q01658 176 aa11.7□□□□□ -0.54
LIG3-213ENST00000590630 TARDBPQ13148 414 aaKnown RBP eCLIP11.7□□□□□ -0.54
LIG3-213ENST00000590630 ITIH4Q14624 930 aa11.7□□□□□ -0.54
LIG3-213ENST00000590630 KIF26BQ2KJY2 2108 aa11.7□□□□□ -0.54
LIG3-213ENST00000590630 AGAP9Q5VTM2 703 aa11.7□□□□□ -0.54
LIG3-213ENST00000590630 PACS1Q6VY07 963 aa11.7□□□□□ -0.54
LIG3-213ENST00000590630 RBM44Q6ZP01 1051 aaKnown RBP11.7□□□□□ -0.54
LIG3-213ENST00000590630 DET1Q7L5Y6 550 aa11.7□□□□□ -0.54
LIG3-213ENST00000590630 PCGF5Q86SE9 256 aa11.7□□□□□ -0.54
LIG3-213ENST00000590630 SLC9B2Q86UD5 537 aa11.7□□□□□ -0.54
LIG3-213ENST00000590630 CAND1Q86VP6 1230 aaKnown RBP11.7□□□□□ -0.54
LIG3-213ENST00000590630 KLHL7Q8IXQ5 586 aa11.7□□□□□ -0.54
LIG3-213ENST00000590630 PIANPQ8IYJ0 282 aa11.7□□□□□ -0.54
LIG3-213ENST00000590630 NAT8LQ8N9F0 302 aa11.7□□□□□ -0.54
LIG3-213ENST00000590630 OR6P1Q8NGX9 317 aa11.7□□□□□ -0.54
LIG3-213ENST00000590630 OR4L1Q8NH43 312 aa11.7□□□□□ -0.54
LIG3-213ENST00000590630 GATA6Q92908 595 aa11.7□□□□□ -0.54
LIG3-213ENST00000590630 LINC00615Q96LM1 132 aaPredicted RBP11.7□□□□□ -0.54
LIG3-213ENST00000590630 SERPINB12Q96P63 405 aa11.7□□□□□ -0.54
LIG3-213ENST00000590630 GFM1Q96RP9 751 aaKnown RBP11.7□□□□□ -0.54
LIG3-213ENST00000590630 VPS37BQ9H9H4 285 aa11.7□□□□□ -0.54
LIG3-213ENST00000590630 SARS2Q9NP81 518 aaKnown RBP11.7□□□□□ -0.54
LIG3-213ENST00000590630 PRDM8Q9NQV8 689 aa11.7□□□□□ -0.54
LIG3-213ENST00000590630 TREX1Q9NSU2 369 aa11.7□□□□□ -0.54
LIG3-213ENST00000590630 SYBUQ9NX95 663 aa11.7□□□□□ -0.54
LIG3-213ENST00000590630 SAMD15Q9P1V8 674 aa11.7□□□□□ -0.54
LIG3-213ENST00000590630 SOX13Q9UN79 622 aa11.7□□□□□ -0.54
LIG3-213ENST00000590630 MAGEB16A2A368 324 aa11.69□□□□□ -0.54
LIG3-213ENST00000590630 MGAT4DA6NG13 374 aa11.69□□□□□ -0.54
LIG3-213ENST00000590630 OR51F1A6NGY5 319 aa11.69□□□□□ -0.54
LIG3-213ENST00000590630 SDR42E2A6NKP2 422 aa11.69□□□□□ -0.54
LIG3-213ENST00000590630 PDZK1P1A8MUH7 402 aa11.69□□□□□ -0.54
LIG3-213ENST00000590630 D6RAR5 112 aa11.69□□□□□ -0.54
LIG3-213ENST00000590630 QSOX1O00391 747 aa11.69□□□□□ -0.54
LIG3-213ENST00000590630 DNALI1O14645 258 aaPredicted RBP11.69□□□□□ -0.54
LIG3-213ENST00000590630 SGTAO43765 313 aa11.69□□□□□ -0.54
LIG3-213ENST00000590630 AVILO75366 819 aa11.69□□□□□ -0.54
LIG3-213ENST00000590630 AP2A2O94973 939 aa11.69□□□□□ -0.54
LIG3-213ENST00000590630 GOT2P00505 430 aaKnown RBP11.69□□□□□ -0.54
LIG3-213ENST00000590630 GSTM1P09488 218 aa11.69□□□□□ -0.54
LIG3-213ENST00000590630 XRCC1P18887 633 aaPredicted RBP11.69□□□□□ -0.54
LIG3-213ENST00000590630 PPARGP37231 505 aaPredicted RBP11.69□□□□□ -0.54
LIG3-213ENST00000590630 NSG1P42857 185 aa11.69□□□□□ -0.54
LIG3-213ENST00000590630 MAGEA3P43357 314 aa11.69□□□□□ -0.54
LIG3-213ENST00000590630 CCL7P80098 99 aa11.69□□□□□ -0.54
LIG3-213ENST00000590630 GSTM4Q03013 218 aa11.69□□□□□ -0.54
LIG3-213ENST00000590630 HHEXQ03014 270 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms