RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 KCNK13Q9HB14 408 aa10.39□□□□□ -0.75
SS18-217ENST00000580958 TRPV5Q9NQA5 729 aa10.39□□□□□ -0.75
SS18-217ENST00000580958 HEBP1Q9NRV9 189 aa10.39□□□□□ -0.75
SS18-217ENST00000580958 NCKIPSDQ9NZQ3 722 aa10.39□□□□□ -0.75
SS18-217ENST00000580958 ATXN2Q99700 1313 aaKnown RBP10.38□□□□□ -0.75
SS18-217ENST00000580958 SZT2Q5T011 3432 aa10.38□□□□□ -0.75
SS18-217ENST00000580958 SUPT3HB4E1H0 165 aa10.38□□□□□ -0.75
SS18-217ENST00000580958 BTN3A1O00481 513 aa10.38□□□□□ -0.75
SS18-217ENST00000580958 HGSO14964 777 aaPredicted RBP10.38□□□□□ -0.75
SS18-217ENST00000580958 NARSO43776 548 aaKnown RBP10.38□□□□□ -0.75
SS18-217ENST00000580958 NPHS1O60500 1241 aa10.38□□□□□ -0.75
SS18-217ENST00000580958 RNASEH1O60930 286 aaKnown RBP10.38□□□□□ -0.75
SS18-217ENST00000580958 KERAO60938 352 aa10.38□□□□□ -0.75
SS18-217ENST00000580958 MTX2O75431 263 aa10.38□□□□□ -0.75
SS18-217ENST00000580958 SUPT3HO75486 399 aa10.38□□□□□ -0.75
SS18-217ENST00000580958 IPO13O94829 963 aaKnown RBP10.38□□□□□ -0.75
SS18-217ENST00000580958 KIAA0754O94854 1291 aa10.38□□□□□ -0.75
SS18-217ENST00000580958 KLF8O95600 359 aaPredicted RBP10.38□□□□□ -0.75
SS18-217ENST00000580958 ADH1BP00325 375 aa10.38□□□□□ -0.75
SS18-217ENST00000580958 CHRNGP07510 517 aa10.38□□□□□ -0.75
SS18-217ENST00000580958 OR56A5P0C7T3 313 aa10.38□□□□□ -0.75
SS18-217ENST00000580958 COL9A1P20849 921 aa10.38□□□□□ -0.75
SS18-217ENST00000580958 NTSR1P30989 418 aa10.38□□□□□ -0.75
SS18-217ENST00000580958 DRD3P35462 400 aa10.38□□□□□ -0.75
SS18-217ENST00000580958 AQP5P55064 265 aa10.38□□□□□ -0.75
SS18-217ENST00000580958 RPS14P62263 151 aaKnown RBP10.38□□□□□ -0.75
SS18-217ENST00000580958 KHDC1Q4VXA5 237 aaKnown RBP10.38□□□□□ -0.75
SS18-217ENST00000580958 ACSBG2Q5FVE4 666 aa10.38□□□□□ -0.75
SS18-217ENST00000580958 TMEM196Q5HYL7 178 aa10.38□□□□□ -0.75
SS18-217ENST00000580958 CFAP157Q5JU67 520 aa10.38□□□□□ -0.75
SS18-217ENST00000580958 ZNF776Q68DI1 518 aaPredicted RBP10.38□□□□□ -0.75
SS18-217ENST00000580958 KIAA1211LQ6NV74 962 aa10.38□□□□□ -0.75
SS18-217ENST00000580958 TRIM67Q6ZTA4 783 aa10.38□□□□□ -0.75
SS18-217ENST00000580958 ZNF765Q7L2R6 523 aa10.38□□□□□ -0.75
SS18-217ENST00000580958 PIWIL4Q7Z3Z4 852 aaKnown RBP10.38□□□□□ -0.75
SS18-217ENST00000580958 CYP2U1Q7Z449 544 aa10.38□□□□□ -0.75
SS18-217ENST00000580958 SLC22A9Q8IVM8 553 aa10.38□□□□□ -0.75
SS18-217ENST00000580958 LSMEM2Q8N112 164 aa10.38□□□□□ -0.75
SS18-217ENST00000580958 AADATQ8N5Z0 425 aa10.38□□□□□ -0.75
SS18-217ENST00000580958 ZNF781Q8N8C0 355 aa10.38□□□□□ -0.75
SS18-217ENST00000580958 PTGR2Q8N8N7 351 aaPredicted RBP10.38□□□□□ -0.75
SS18-217ENST00000580958 OR2T3Q8NH03 318 aa10.38□□□□□ -0.75
SS18-217ENST00000580958 RHEBL1Q8TAI7 183 aa10.38□□□□□ -0.75
SS18-217ENST00000580958 STAG3L4Q8TBR4 150 aa10.38□□□□□ -0.75
SS18-217ENST00000580958 PIWIL2Q8TC59 973 aaKnown RBP10.38□□□□□ -0.75
SS18-217ENST00000580958 CXorf40AQ8TE69 158 aa10.38□□□□□ -0.75
SS18-217ENST00000580958 BTN2A2Q8WVV5 523 aa10.38□□□□□ -0.75
SS18-217ENST00000580958 RAB7BQ96AH8 199 aa10.38□□□□□ -0.75
SS18-217ENST00000580958 NUS1Q96E22 293 aa10.38□□□□□ -0.75
SS18-217ENST00000580958 PHF21BQ96EK2 531 aa10.38□□□□□ -0.75
SS18-217ENST00000580958 DCUN1D1Q96GG9 259 aa10.38□□□□□ -0.75
SS18-217ENST00000580958 GABRG3Q99928 467 aa10.38□□□□□ -0.75
SS18-217ENST00000580958 PHF7Q9BWX1 381 aaPredicted RBP10.38□□□□□ -0.75
SS18-217ENST00000580958 CDH19Q9H159 772 aa10.38□□□□□ -0.75
SS18-217ENST00000580958 KCTD5Q9NXV2 234 aa10.38□□□□□ -0.75
SS18-217ENST00000580958 MBD1Q9UIS9 605 aaPredicted RBP10.38□□□□□ -0.75
SS18-217ENST00000580958 RNF112Q9ULX5 631 aa10.38□□□□□ -0.75
SS18-217ENST00000580958 FADS3Q9Y5Q0 445 aa10.38□□□□□ -0.75
SS18-217ENST00000580958 CFAP99D6REC4 459 aa10.37□□□□□ -0.75
SS18-217ENST00000580958 ADAM23O75077 832 aa10.37□□□□□ -0.75
SS18-217ENST00000580958 RECQL5O94762 991 aaPredicted RBP10.37□□□□□ -0.75
SS18-217ENST00000580958 TPBGLP0DKB5 382 aa10.37□□□□□ -0.75
SS18-217ENST00000580958 MTHFD2P13995 350 aa10.37□□□□□ -0.75
SS18-217ENST00000580958 ATP1B2P14415 290 aaPredicted RBP10.37□□□□□ -0.75
SS18-217ENST00000580958 MSH3P20585 1137 aa10.37□□□□□ -0.75
SS18-217ENST00000580958 DRD1P21728 446 aa10.37□□□□□ -0.75
SS18-217ENST00000580958 C5AR1P21730 350 aa10.37□□□□□ -0.75
SS18-217ENST00000580958 DGKAP23743 735 aa10.37□□□□□ -0.75
SS18-217ENST00000580958 RGS4P49798 205 aa10.37□□□□□ -0.75
SS18-217ENST00000580958 COPAP53621 1224 aa10.37□□□□□ -0.75
SS18-217ENST00000580958 NFKB2Q00653 900 aa10.37□□□□□ -0.75
SS18-217ENST00000580958 MLLT1Q03111 559 aaPredicted RBP10.37□□□□□ -0.75
SS18-217ENST00000580958 PRKAA1Q13131 559 aa10.37□□□□□ -0.75
SS18-217ENST00000580958 STARD3Q14849 445 aa10.37□□□□□ -0.75
SS18-217ENST00000580958 HSF5Q4G112 596 aaPredicted RBP10.37□□□□□ -0.75
SS18-217ENST00000580958 UNC50Q53HI1 259 aa10.37□□□□□ -0.75
SS18-217ENST00000580958 ARL13AQ5H913 290 aaPredicted RBP10.37□□□□□ -0.75
SS18-217ENST00000580958 AGBL4Q5VU57 503 aa10.37□□□□□ -0.75
SS18-217ENST00000580958 SDE2Q6IQ49 451 aa10.37□□□□□ -0.75
SS18-217ENST00000580958 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP10.37□□□□□ -0.75
SS18-217ENST00000580958 RPS27LQ71UM5 84 aaKnown RBP10.37□□□□□ -0.75
SS18-217ENST00000580958 Q7L0L9 218 aa10.37□□□□□ -0.75
SS18-217ENST00000580958 MAVSQ7Z434 540 aa10.37□□□□□ -0.75
SS18-217ENST00000580958 RAB44Q7Z6P3 723 aaPredicted RBP10.37□□□□□ -0.75
SS18-217ENST00000580958 RAVER1Q8IY67 606 aaKnown RBP10.37□□□□□ -0.75
SS18-217ENST00000580958 PELI3Q8N2H9 469 aa10.37□□□□□ -0.75
SS18-217ENST00000580958 HDDC3Q8N4P3 179 aa10.37□□□□□ -0.75
SS18-217ENST00000580958 DDHD1Q8NEL9 900 aa10.37□□□□□ -0.75
SS18-217ENST00000580958 CCT6BQ92526 530 aa10.37□□□□□ -0.75
SS18-217ENST00000580958 GLYATL1Q969I3 302 aa10.37□□□□□ -0.75
SS18-217ENST00000580958 PDLIM5Q96HC4 596 aaKnown RBP10.37□□□□□ -0.75
SS18-217ENST00000580958 VPS35Q96QK1 796 aa10.37□□□□□ -0.75
SS18-217ENST00000580958 PANX3Q96QZ0 392 aa10.37□□□□□ -0.75
SS18-217ENST00000580958 SHCBP1LQ9BZQ2 653 aa10.37□□□□□ -0.75
SS18-217ENST00000580958 ILKAPQ9H0C8 392 aaPredicted RBP10.37□□□□□ -0.75
SS18-217ENST00000580958 MYLK2Q9H1R3 596 aa10.37□□□□□ -0.75
SS18-217ENST00000580958 KDM4CQ9H3R0 1056 aa10.37□□□□□ -0.75
SS18-217ENST00000580958 LATS2Q9NRM7 1088 aa10.37□□□□□ -0.75
SS18-217ENST00000580958 SPATS2LQ9NUQ6 558 aaKnown RBP10.37□□□□□ -0.75
SS18-217ENST00000580958 KCNK4Q9NYG8 393 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms