RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 RTN2O75298 545 aa5.8□□□□□ -1.48
VPS53-219ENST00000576019 GJB5O95377 273 aa5.8□□□□□ -1.48
VPS53-219ENST00000576019 TRUB2O95900 331 aaKnown RBP5.8□□□□□ -1.48
VPS53-219ENST00000576019 EEF2P13639 858 aaKnown RBP5.8□□□□□ -1.48
VPS53-219ENST00000576019 SLC2A4P14672 509 aa5.8□□□□□ -1.48
VPS53-219ENST00000576019 HOXB9P17482 250 aaPredicted RBP5.8□□□□□ -1.48
VPS53-219ENST00000576019 CTPS1P17812 591 aa5.8□□□□□ -1.48
VPS53-219ENST00000576019 SP100P23497 879 aaPredicted RBP5.8□□□□□ -1.48
VPS53-219ENST00000576019 STARD6P59095 220 aa5.8□□□□□ -1.48
VPS53-219ENST00000576019 SUMO2P61956 95 aaKnown RBP5.8□□□□□ -1.48
VPS53-219ENST00000576019 ECT2LQ008S8 904 aa5.8□□□□□ -1.48
VPS53-219ENST00000576019 GRSF1Q12849 480 aaKnown RBP eCLIP5.8□□□□□ -1.484e-9■■■■■ 30.8
VPS53-219ENST00000576019 NPRL3Q12980 569 aa5.8□□□□□ -1.48
VPS53-219ENST00000576019 KCNC3Q14003 757 aa5.8□□□□□ -1.48
VPS53-219ENST00000576019 TRIM29Q14134 588 aa5.8□□□□□ -1.48
VPS53-219ENST00000576019 NAB2Q15742 525 aa5.8□□□□□ -1.48
VPS53-219ENST00000576019 KCNA10Q16322 511 aa5.8□□□□□ -1.48
VPS53-219ENST00000576019 KCNMB1Q16558 191 aa5.8□□□□□ -1.48
VPS53-219ENST00000576019 HFEQ30201 348 aa5.8□□□□□ -1.48
VPS53-219ENST00000576019 ZNF528Q3MIS6 628 aa5.8□□□□□ -1.48
VPS53-219ENST00000576019 KBTBD12Q3ZCT8 623 aa5.8□□□□□ -1.48
VPS53-219ENST00000576019 ANKDD1AQ495B1 522 aa5.8□□□□□ -1.48
VPS53-219ENST00000576019 PDCD4Q53EL6 469 aaKnown RBP5.8□□□□□ -1.48
VPS53-219ENST00000576019 TMEM198Q66K66 360 aa5.8□□□□□ -1.48
VPS53-219ENST00000576019 TMCO2Q7Z6W1 182 aaPredicted RBP5.8□□□□□ -1.48
VPS53-219ENST00000576019 CENPVQ7Z7K6 275 aaPredicted RBP5.8□□□□□ -1.48
VPS53-219ENST00000576019 C1orf210Q8IVY1 113 aa5.8□□□□□ -1.48
VPS53-219ENST00000576019 KLHL7Q8IXQ5 586 aa5.8□□□□□ -1.48
VPS53-219ENST00000576019 GUF1Q8N442 669 aaKnown RBP5.8□□□□□ -1.48
VPS53-219ENST00000576019 FAM110DQ8TAY7 271 aaPredicted RBP5.8□□□□□ -1.48
VPS53-219ENST00000576019 AKAP1Q92667 903 aaKnown RBP eCLIP5.8□□□□□ -1.48
VPS53-219ENST00000576019 RNF31Q96EP0 1072 aa5.8□□□□□ -1.48
VPS53-219ENST00000576019 ZNF830Q96NB3 372 aaPredicted RBP5.8□□□□□ -1.48
VPS53-219ENST00000576019 ZNF558Q96NG5 402 aa5.8□□□□□ -1.48
VPS53-219ENST00000576019 NEK1Q96PY6 1258 aa5.8□□□□□ -1.48
VPS53-219ENST00000576019 RAD9AQ99638 391 aa5.8□□□□□ -1.48
VPS53-219ENST00000576019 PLA2G12BQ9BX93 195 aa5.8□□□□□ -1.48
VPS53-219ENST00000576019 TEX13BQ9BXU2 312 aa5.8□□□□□ -1.48
VPS53-219ENST00000576019 GPR88Q9GZN0 384 aa5.8□□□□□ -1.48
VPS53-219ENST00000576019 ABCG8Q9H221 673 aa5.8□□□□□ -1.48
VPS53-219ENST00000576019 SFXN1Q9H9B4 322 aa5.8□□□□□ -1.48
VPS53-219ENST00000576019 ANO10Q9NW15 660 aa5.8□□□□□ -1.48
VPS53-219ENST00000576019 PAG1Q9NWQ8 432 aa5.8□□□□□ -1.48
VPS53-219ENST00000576019 NINJ2Q9NZG7 142 aa5.8□□□□□ -1.48
VPS53-219ENST00000576019 DBF4Q9UBU7 674 aaPredicted RBP5.8□□□□□ -1.48
VPS53-219ENST00000576019 DHDHQ9UQ10 334 aa5.8□□□□□ -1.48
VPS53-219ENST00000576019 R3HDM2Q9Y2K5 976 aaKnown RBP5.8□□□□□ -1.48
VPS53-219ENST00000576019 NFS1Q9Y697 457 aa5.8□□□□□ -1.48
VPS53-219ENST00000576019 KIF16BQ96L93 1317 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 TEX51A0A1B0GUA7 166 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 LNP1A1A4G5 178 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 TCAF2A6NFQ2 919 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 VEGFDO43915 354 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 TMPRSS11DO60235 418 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 B4GALT4O60513 344 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 ONECUT2O95948 504 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 C1RP00736 705 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 SERPINC1P01008 464 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 TFP02787 698 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 KLKB1P03952 638 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 ZFYP08048 801 aaPredicted RBP5.79□□□□□ -1.48
VPS53-219ENST00000576019 SRCP12931 536 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 TNFRSF1AP19438 455 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 TYMPP19971 482 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 CR2P20023 1033 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 NDUFS1P28331 727 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 DUSP1P28562 367 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 HSPA4P34932 840 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 CASP3P42574 277 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 TKTL1P51854 596 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 LUMP51884 338 aaPredicted RBP5.79□□□□□ -1.48
VPS53-219ENST00000576019 ZNF132P52740 706 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 OAZ1P54368 228 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 NME5P56597 212 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 YPEL5P62699 121 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 CXADRP78310 365 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 GPC5P78333 572 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 IRX3P78415 501 aaPredicted RBP5.79□□□□□ -1.48
VPS53-219ENST00000576019 HMGN5P82970 282 aaKnown RBP5.79□□□□□ -1.48
VPS53-219ENST00000576019 LMAN2Q12907 356 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 GPM6BQ13491 265 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 GRM7Q14831 915 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 DLG2Q15700 870 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 PCGF3Q3KNV8 242 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 EPC2Q52LR7 807 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 B3GNTL1Q67FW5 361 aaPredicted RBP5.79□□□□□ -1.48
VPS53-219ENST00000576019 LRRC8EQ6NSJ5 796 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 MPZL3Q6UWV2 235 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 ISLR2Q6UXK2 745 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 LRRC55Q6ZSA7 311 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 PTCHD4Q6ZW05 846 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 DEFB128Q7Z7B8 93 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 DTX2Q86UW9 622 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 CNTN4Q8IWV2 1026 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 LAS2Q8IYD9 372 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 MAML2Q8IZL2 1156 aaPredicted RBP5.79□□□□□ -1.48
VPS53-219ENST00000576019 KDM1BQ8NB78 822 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 FBXO15Q8NCQ5 510 aaPredicted RBP5.79□□□□□ -1.48
VPS53-219ENST00000576019 B3GALNT2Q8NCR0 500 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 ADPRHL1Q8NDY3 354 aa5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms