RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 TMTC4Q5T4D3 741 aa15.8■□□□□ 0.12
VPS53-218ENST00000575207 IRAK1BP1Q5VVH5 260 aa15.8■□□□□ 0.12
VPS53-218ENST00000575207 EXD1Q8NHP7 514 aa15.8■□□□□ 0.12
VPS53-218ENST00000575207 SNX21Q969T3 373 aa15.8■□□□□ 0.12
VPS53-218ENST00000575207 PTERQ96BW5 349 aa15.8■□□□□ 0.12
VPS53-218ENST00000575207 SDCCAG3Q96C92 435 aa15.8■□□□□ 0.12
VPS53-218ENST00000575207 AP2M1Q96CW1 435 aa15.8■□□□□ 0.12
VPS53-218ENST00000575207 C17orf62Q9BQA9 187 aa15.8■□□□□ 0.12
VPS53-218ENST00000575207 LHPPQ9H008 270 aa15.8■□□□□ 0.12
VPS53-218ENST00000575207 ABCG8Q9H221 673 aa15.8■□□□□ 0.12
VPS53-218ENST00000575207 PDFQ9HBH1 243 aa15.8■□□□□ 0.12
VPS53-218ENST00000575207 SLC24A3Q9HC58 644 aa15.8■□□□□ 0.12
VPS53-218ENST00000575207 SLC6A20Q9NP91 592 aa15.8■□□□□ 0.12
VPS53-218ENST00000575207 SIK3Q9Y2K2 1263 aa15.8■□□□□ 0.12
VPS53-218ENST00000575207 FAM72CH0Y354 149 aa15.79■□□□□ 0.12
VPS53-218ENST00000575207 CETN3O15182 167 aa15.79■□□□□ 0.12
VPS53-218ENST00000575207 PRAMEF2O60811 474 aa15.79■□□□□ 0.12
VPS53-218ENST00000575207 PMPCBO75439 489 aa15.79■□□□□ 0.12
VPS53-218ENST00000575207 LRIG2O94898 1065 aa15.79■□□□□ 0.12
VPS53-218ENST00000575207 ZBTB11O95625 1053 aaPredicted RBP15.79■□□□□ 0.12
VPS53-218ENST00000575207 ATP1A1P05023 1023 aaKnown RBP15.79■□□□□ 0.12
VPS53-218ENST00000575207 CD63P08962 238 aa15.79■□□□□ 0.12
VPS53-218ENST00000575207 HOXD4P09016 255 aaPredicted RBP15.79■□□□□ 0.12
VPS53-218ENST00000575207 TNFSF10P50591 281 aa15.79■□□□□ 0.12
VPS53-218ENST00000575207 ADCY2Q08462 1091 aa15.79■□□□□ 0.12
VPS53-218ENST00000575207 FAM72AQ5TYM5 149 aa15.79■□□□□ 0.12
VPS53-218ENST00000575207 FAM72DQ6L9T8 149 aa15.79■□□□□ 0.12
VPS53-218ENST00000575207 FAM72BQ86X60 149 aa15.79■□□□□ 0.12
VPS53-218ENST00000575207 ZDHHC17Q8IUH5 632 aa15.79■□□□□ 0.12
VPS53-218ENST00000575207 SPPL2CQ8IUH8 684 aa15.79■□□□□ 0.12
VPS53-218ENST00000575207 TSEN2Q8NCE0 465 aaKnown RBP15.79■□□□□ 0.12
VPS53-218ENST00000575207 C1orf131Q8NDD1 294 aaKnown RBP15.79■□□□□ 0.12
VPS53-218ENST00000575207 LMO3Q8TAP4 145 aa15.79■□□□□ 0.12
VPS53-218ENST00000575207 SCAMP4Q969E2 229 aa15.79■□□□□ 0.12
VPS53-218ENST00000575207 TBC1D31Q96DN5 1066 aa15.79■□□□□ 0.12
VPS53-218ENST00000575207 AGAP2Q99490 1192 aa15.79■□□□□ 0.12
VPS53-218ENST00000575207 ZNF395Q9H8N7 513 aaPredicted RBP15.79■□□□□ 0.12
VPS53-218ENST00000575207 WASH4PA8MWX3 477 aa15.78■□□□□ 0.12
VPS53-218ENST00000575207 PMM2O15305 246 aa15.78■□□□□ 0.12
VPS53-218ENST00000575207 WISP2O76076 250 aa15.78■□□□□ 0.12
VPS53-218ENST00000575207 ZNF202O95125 648 aa15.78■□□□□ 0.12
VPS53-218ENST00000575207 TNFAIP3P21580 790 aa15.78■□□□□ 0.12
VPS53-218ENST00000575207 MSX1P28360 303 aa15.78■□□□□ 0.12
VPS53-218ENST00000575207 GNA15P30679 374 aa15.78■□□□□ 0.12
VPS53-218ENST00000575207 MYBPHQ13203 477 aa15.78■□□□□ 0.12
VPS53-218ENST00000575207 PARP15Q460N3 678 aa15.78■□□□□ 0.12
VPS53-218ENST00000575207 LINC00696Q6ZRV3 163 aa15.78■□□□□ 0.12
VPS53-218ENST00000575207 RFLNAQ6ZTI6 216 aa15.78■□□□□ 0.12
VPS53-218ENST00000575207 ACRBPQ8NEB7 543 aa15.78■□□□□ 0.12
VPS53-218ENST00000575207 SLC35C1Q96A29 364 aa15.78■□□□□ 0.12
VPS53-218ENST00000575207 RMND5BQ96G75 393 aaPredicted RBP15.78■□□□□ 0.12
VPS53-218ENST00000575207 PAGE5Q96GU1 130 aa15.78■□□□□ 0.12
VPS53-218ENST00000575207 MAGED4Q96JG8 741 aa15.78■□□□□ 0.12
VPS53-218ENST00000575207 COX4I2Q96KJ9 171 aa15.78■□□□□ 0.12
VPS53-218ENST00000575207 NSMCE3Q96MG7 304 aa15.78■□□□□ 0.12
VPS53-218ENST00000575207 KREMEN1Q96MU8 473 aa15.78■□□□□ 0.12
VPS53-218ENST00000575207 POLDIP3Q9BY77 421 aaKnown RBP15.78■□□□□ 0.12
VPS53-218ENST00000575207 SYNCQ9H7C4 482 aa15.78■□□□□ 0.12
VPS53-218ENST00000575207 ACP6Q9NPH0 428 aa15.78■□□□□ 0.12
VPS53-218ENST00000575207 STMN3Q9NZ72 180 aa15.78■□□□□ 0.12
VPS53-218ENST00000575207 CD84Q9UIB8 345 aa15.78■□□□□ 0.12
VPS53-218ENST00000575207 FBXL4Q9UKA2 621 aa15.78■□□□□ 0.12
VPS53-218ENST00000575207 NUP210LQ5VU65 1888 aa15.78■□□□□ 0.12
VPS53-218ENST00000575207 A0A1W2PQ67 120 aa15.77■□□□□ 0.12
VPS53-218ENST00000575207 UBA6A0AVT1 1052 aaPredicted RBP15.77■□□□□ 0.12
VPS53-218ENST00000575207 SLC9B1P1A6NJY1 282 aa15.77■□□□□ 0.12
VPS53-218ENST00000575207 KLHL18O94889 574 aa15.77■□□□□ 0.12
VPS53-218ENST00000575207 LCA5LO95447 670 aa15.77■□□□□ 0.12
VPS53-218ENST00000575207 UMODP07911 640 aa15.77■□□□□ 0.12
VPS53-218ENST00000575207 CYP2A6P11509 494 aaPredicted RBP15.77■□□□□ 0.12
VPS53-218ENST00000575207 FMO5P49326 533 aa15.77■□□□□ 0.12
VPS53-218ENST00000575207 SNX16P57768 344 aa15.77■□□□□ 0.12
VPS53-218ENST00000575207 NSUN2Q08J23 767 aaKnown RBP eCLIP15.77■□□□□ 0.12
VPS53-218ENST00000575207 PTPN20Q4JDL3 420 aa15.77■□□□□ 0.12
VPS53-218ENST00000575207 DNTTIP2Q5QJE6 756 aaKnown RBP15.77■□□□□ 0.12
VPS53-218ENST00000575207 MLIPQ5VWP3 458 aa15.77■□□□□ 0.12
VPS53-218ENST00000575207 KLHL35Q6PF15 583 aa15.77■□□□□ 0.12
VPS53-218ENST00000575207 ABRAXAS1Q6UWZ7 409 aa15.77■□□□□ 0.12
VPS53-218ENST00000575207 TRIM72Q6ZMU5 477 aa15.77■□□□□ 0.12
VPS53-218ENST00000575207 B4GALNT4Q76KP1 1039 aa15.77■□□□□ 0.12
VPS53-218ENST00000575207 KRTAP1-3Q8IUG1 177 aa15.77■□□□□ 0.12
VPS53-218ENST00000575207 ARHGEF19Q8IW93 802 aa15.77■□□□□ 0.12
VPS53-218ENST00000575207 CARFQ8N187 725 aa15.77■□□□□ 0.12
VPS53-218ENST00000575207 DMRTA2Q96SC8 542 aa15.77■□□□□ 0.12
VPS53-218ENST00000575207 FANCEQ9HB96 536 aa15.77■□□□□ 0.12
VPS53-218ENST00000575207 C1GALT1Q9NS00 363 aa15.77■□□□□ 0.12
VPS53-218ENST00000575207 KLC4Q9NSK0 619 aa15.77■□□□□ 0.12
VPS53-218ENST00000575207 COQ3Q9NZJ6 369 aa15.77■□□□□ 0.12
VPS53-218ENST00000575207 PKD1L1Q8TDX9 2849 aa15.76■□□□□ 0.11
VPS53-218ENST00000575207 NPIPB15A6NHN6 443 aaPredicted RBP15.76■□□□□ 0.11
VPS53-218ENST00000575207 E9PLN8 166 aa15.76■□□□□ 0.11
VPS53-218ENST00000575207 RASAL1O95294 804 aa15.76■□□□□ 0.11
VPS53-218ENST00000575207 SIX3O95343 332 aaPredicted RBP15.76■□□□□ 0.11
VPS53-218ENST00000575207 BRAFP15056 766 aa15.76■□□□□ 0.11
VPS53-218ENST00000575207 CYP2A7P20853 494 aa15.76■□□□□ 0.11
VPS53-218ENST00000575207 ARG2P78540 354 aa15.76■□□□□ 0.11
VPS53-218ENST00000575207 DEFB113Q30KQ7 82 aa15.76■□□□□ 0.11
VPS53-218ENST00000575207 PASD1Q8IV76 773 aa15.76■□□□□ 0.11
VPS53-218ENST00000575207 RTL3Q8N8U3 475 aaKnown RBP15.76■□□□□ 0.11
VPS53-218ENST00000575207 OR1L3Q8NH93 324 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms