RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 SCYL1Q96KG9 808 aa13.51□□□□□ -0.25
CCDC40-209ENST00000573474 MAGEB18Q96M61 343 aa13.51□□□□□ -0.25
CCDC40-209ENST00000573474 HHIPQ96QV1 700 aa13.51□□□□□ -0.25
CCDC40-209ENST00000573474 SLC30A3Q99726 388 aa13.51□□□□□ -0.25
CCDC40-209ENST00000573474 MRPL57Q9BQC6 102 aaKnown RBP13.51□□□□□ -0.25
CCDC40-209ENST00000573474 EPHX3Q9H6B9 360 aa13.51□□□□□ -0.25
CCDC40-209ENST00000573474 TRIM39Q9HCM9 518 aa13.51□□□□□ -0.25
CCDC40-209ENST00000573474 MID2Q9UJV3 735 aa13.51□□□□□ -0.25
CCDC40-209ENST00000573474 VEGFDO43915 354 aa13.5□□□□□ -0.25
CCDC40-209ENST00000573474 ZNF217O75362 1048 aa13.5□□□□□ -0.25
CCDC40-209ENST00000573474 SEMA4FO95754 770 aa13.5□□□□□ -0.25
CCDC40-209ENST00000573474 FTH1P02794 183 aa13.5□□□□□ -0.25
CCDC40-209ENST00000573474 BPGMP07738 259 aa13.5□□□□□ -0.25
CCDC40-209ENST00000573474 ITGB6P18564 788 aa13.5□□□□□ -0.25
CCDC40-209ENST00000573474 LSP1P33241 339 aa13.5□□□□□ -0.25
CCDC40-209ENST00000573474 TRIM23P36406 574 aa13.5□□□□□ -0.25
CCDC40-209ENST00000573474 GLRBP48167 497 aa13.5□□□□□ -0.25
CCDC40-209ENST00000573474 ATP6V0D1P61421 351 aa13.5□□□□□ -0.25
CCDC40-209ENST00000573474 IRX4P78413 519 aa13.5□□□□□ -0.25
CCDC40-209ENST00000573474 GTF2H3Q13889 308 aa13.5□□□□□ -0.25
CCDC40-209ENST00000573474 IRF4Q15306 451 aa13.5□□□□□ -0.25
CCDC40-209ENST00000573474 PDK4Q16654 411 aa13.5□□□□□ -0.25
CCDC40-209ENST00000573474 ZNF648Q5T619 568 aaPredicted RBP13.5□□□□□ -0.25
CCDC40-209ENST00000573474 ADGRG6Q86SQ4 1221 aa13.5□□□□□ -0.25
CCDC40-209ENST00000573474 TRIM42Q8IWZ5 723 aa13.5□□□□□ -0.25
CCDC40-209ENST00000573474 FSTL5Q8N475 847 aaPredicted RBP13.5□□□□□ -0.25
CCDC40-209ENST00000573474 CAMKK1Q8N5S9 505 aa13.5□□□□□ -0.25
CCDC40-209ENST00000573474 ZBTB2Q8N680 514 aa13.5□□□□□ -0.25
CCDC40-209ENST00000573474 RASGEF1AQ8N9B8 481 aa13.5□□□□□ -0.25
CCDC40-209ENST00000573474 GIMAP7Q8NHV1 300 aa13.5□□□□□ -0.25
CCDC40-209ENST00000573474 RDH11Q8TC12 318 aa13.5□□□□□ -0.25
CCDC40-209ENST00000573474 LKAAEAR1Q8TD35 194 aa13.5□□□□□ -0.25
CCDC40-209ENST00000573474 NAT14Q8WUY8 206 aa13.5□□□□□ -0.25
CCDC40-209ENST00000573474 PDLIM5Q96HC4 596 aaKnown RBP13.5□□□□□ -0.25
CCDC40-209ENST00000573474 COX14Q96I36 57 aa13.5□□□□□ -0.25
CCDC40-209ENST00000573474 LENG8Q96PV6 779 aaPredicted RBP13.5□□□□□ -0.25
CCDC40-209ENST00000573474 IER2Q9BTL4 223 aa13.5□□□□□ -0.25
CCDC40-209ENST00000573474 TEX101Q9BY14 249 aa13.5□□□□□ -0.25
CCDC40-209ENST00000573474 DERL2Q9GZP9 239 aa13.5□□□□□ -0.25
CCDC40-209ENST00000573474 MRPL46Q9H2W6 279 aaKnown RBP13.5□□□□□ -0.25
CCDC40-209ENST00000573474 CD93Q9NPY3 652 aa13.5□□□□□ -0.25
CCDC40-209ENST00000573474 MBNL1Q9NR56 388 aaKnown RBP13.5□□□□□ -0.25
CCDC40-209ENST00000573474 PSD3Q9NYI0 1048 aa13.5□□□□□ -0.25
CCDC40-209ENST00000573474 CYP8B1Q9UNU6 501 aa13.5□□□□□ -0.25
CCDC40-209ENST00000573474 LRRK1Q38SD2 2015 aa13.5□□□□□ -0.25
CCDC40-209ENST00000573474 PLXNB3Q9ULL4 1909 aa13.5□□□□□ -0.25
CCDC40-209ENST00000573474 CCDC189A1A4V9 331 aa13.49□□□□□ -0.25
CCDC40-209ENST00000573474 WDR91A4D1P6 747 aa13.49□□□□□ -0.25
CCDC40-209ENST00000573474 SRRM3A6NNA2 597 aaPredicted RBP13.49□□□□□ -0.25
CCDC40-209ENST00000573474 KPNA5O15131 536 aa13.49□□□□□ -0.25
CCDC40-209ENST00000573474 SLC31A1O15431 190 aa13.49□□□□□ -0.25
CCDC40-209ENST00000573474 SGTAO43765 313 aa13.49□□□□□ -0.25
CCDC40-209ENST00000573474 CDK14O94921 469 aa13.49□□□□□ -0.25
CCDC40-209ENST00000573474 CBSLP0DN79 551 aa13.49□□□□□ -0.25
CCDC40-209ENST00000573474 NEFHP12036 1026 aa13.49□□□□□ -0.25
CCDC40-209ENST00000573474 CPA3P15088 417 aa13.49□□□□□ -0.25
CCDC40-209ENST00000573474 CD1DP15813 335 aa13.49□□□□□ -0.25
CCDC40-209ENST00000573474 TFEBP19484 476 aa13.49□□□□□ -0.25
CCDC40-209ENST00000573474 DGKAP23743 735 aa13.49□□□□□ -0.25
CCDC40-209ENST00000573474 MAT2AP31153 395 aaKnown RBP13.49□□□□□ -0.25
CCDC40-209ENST00000573474 CBSP35520 551 aa13.49□□□□□ -0.25
CCDC40-209ENST00000573474 MAGEA9P43362 315 aa13.49□□□□□ -0.25
CCDC40-209ENST00000573474 RGS4P49798 205 aa13.49□□□□□ -0.25
CCDC40-209ENST00000573474 CCR5P51681 352 aa13.49□□□□□ -0.25
CCDC40-209ENST00000573474 PPP2CBP62714 309 aa13.49□□□□□ -0.25
CCDC40-209ENST00000573474 PPP2CAP67775 309 aa13.49□□□□□ -0.25
CCDC40-209ENST00000573474 CDK3Q00526 305 aa13.49□□□□□ -0.25
CCDC40-209ENST00000573474 SIGLEC14Q08ET2 396 aa13.49□□□□□ -0.25
CCDC40-209ENST00000573474 INPP5AQ14642 412 aa13.49□□□□□ -0.25
CCDC40-209ENST00000573474 TTLL9Q3SXZ7 439 aa13.49□□□□□ -0.25
CCDC40-209ENST00000573474 BCL7AQ4VC05 210 aa13.49□□□□□ -0.25
CCDC40-209ENST00000573474 TMEM220Q6QAJ8 160 aa13.49□□□□□ -0.25
CCDC40-209ENST00000573474 OTOAQ7RTW8 1153 aa13.49□□□□□ -0.25
CCDC40-209ENST00000573474 HEATR4Q86WZ0 1026 aa13.49□□□□□ -0.25
CCDC40-209ENST00000573474 NUDCD3Q8IVD9 361 aa13.49□□□□□ -0.25
CCDC40-209ENST00000573474 SPNS2Q8IVW8 549 aa13.49□□□□□ -0.25
CCDC40-209ENST00000573474 TMEM151AQ8N4L1 468 aa13.49□□□□□ -0.25
CCDC40-209ENST00000573474 DENND6BQ8NEG7 585 aa13.49□□□□□ -0.25
CCDC40-209ENST00000573474 EEF1AKMT1Q8WVE0 214 aa13.49□□□□□ -0.25
CCDC40-209ENST00000573474 ZNF514Q96K75 400 aaPredicted RBP13.49□□□□□ -0.25
CCDC40-209ENST00000573474 OR2AG1Q9H205 316 aa13.49□□□□□ -0.25
CCDC40-209ENST00000573474 TFB2MQ9H5Q4 396 aaKnown RBP13.49□□□□□ -0.25
CCDC40-209ENST00000573474 WDR26Q9H7D7 661 aa13.49□□□□□ -0.25
CCDC40-209ENST00000573474 PHPT1Q9NRX4 125 aaPredicted RBP13.49□□□□□ -0.25
CCDC40-209ENST00000573474 COPG2Q9UBF2 871 aa13.49□□□□□ -0.25
CCDC40-209ENST00000573474 MBD1Q9UIS9 605 aaPredicted RBP13.49□□□□□ -0.25
CCDC40-209ENST00000573474 OR2AG2A6NM03 316 aa13.48□□□□□ -0.25
CCDC40-209ENST00000573474 TARM1B6A8C7 271 aa13.48□□□□□ -0.25
CCDC40-209ENST00000573474 C10orf142B7Z368 130 aa13.48□□□□□ -0.25
CCDC40-209ENST00000573474 RAD51BO15315 384 aa13.48□□□□□ -0.25
CCDC40-209ENST00000573474 ZBTB14O43829 449 aa13.48□□□□□ -0.25
CCDC40-209ENST00000573474 TSPAN12O95859 305 aa13.48□□□□□ -0.25
CCDC40-209ENST00000573474 DCNP07585 359 aaKnown RBP13.48□□□□□ -0.25
CCDC40-209ENST00000573474 MYL2P10916 166 aa13.48□□□□□ -0.25
CCDC40-209ENST00000573474 AOAHP28039 575 aa13.48□□□□□ -0.25
CCDC40-209ENST00000573474 CD6P30203 668 aa13.48□□□□□ -0.25
CCDC40-209ENST00000573474 CCR7P32248 378 aa13.48□□□□□ -0.25
CCDC40-209ENST00000573474 PRLHRP49683 370 aa13.48□□□□□ -0.25
CCDC40-209ENST00000573474 CTSCP53634 463 aa13.48□□□□□ -0.25
CCDC40-209ENST00000573474 MTAPQ13126 283 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms