RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 CCP110O43303 1012 aa10.86□□□□□ -0.67
VPS53-207ENST00000570510 NUAK1O60285 661 aa10.86□□□□□ -0.67
VPS53-207ENST00000570510 JCHAINP01591 159 aa10.86□□□□□ -0.67
VPS53-207ENST00000570510 TPM3P06753 285 aa10.86□□□□□ -0.67
VPS53-207ENST00000570510 BPIP17213 487 aa10.86□□□□□ -0.67
VPS53-207ENST00000570510 RPL10P27635 214 aaKnown RBP10.86□□□□□ -0.67
VPS53-207ENST00000570510 HTR1EP28566 365 aa10.86□□□□□ -0.67
VPS53-207ENST00000570510 HALP42357 657 aa10.86□□□□□ -0.67
VPS53-207ENST00000570510 CDC16Q13042 620 aa10.86□□□□□ -0.67
VPS53-207ENST00000570510 GPR18Q14330 331 aa10.86□□□□□ -0.67
VPS53-207ENST00000570510 MYBPC3Q14896 1274 aa10.86□□□□□ -0.67
VPS53-207ENST00000570510 PLCL1Q15111 1095 aa10.86□□□□□ -0.67
VPS53-207ENST00000570510 PLA2G4EQ3MJ16 856 aa10.86□□□□□ -0.67
VPS53-207ENST00000570510 DNTTIP2Q5QJE6 756 aaKnown RBP10.86□□□□□ -0.67
VPS53-207ENST00000570510 ARMC6Q6NXE6 501 aa10.86□□□□□ -0.67
VPS53-207ENST00000570510 CRTC3Q6UUV7 619 aa10.86□□□□□ -0.67
VPS53-207ENST00000570510 IGFL3Q6UXB1 125 aa10.86□□□□□ -0.67
VPS53-207ENST00000570510 SPNS3Q6ZMD2 512 aa10.86□□□□□ -0.67
VPS53-207ENST00000570510 KMT5CQ86Y97 462 aa10.86□□□□□ -0.67
VPS53-207ENST00000570510 ZBTB2Q8N680 514 aa10.86□□□□□ -0.67
VPS53-207ENST00000570510 EPS8L1Q8TE68 723 aa10.86□□□□□ -0.67
VPS53-207ENST00000570510 GRHL3Q8TE85 626 aa10.86□□□□□ -0.67
VPS53-207ENST00000570510 TRAPPC9Q96Q05 1148 aa10.86□□□□□ -0.67
VPS53-207ENST00000570510 OR2AG1Q9H205 316 aa10.86□□□□□ -0.67
VPS53-207ENST00000570510 SLC40A1Q9NP59 571 aa10.86□□□□□ -0.67
VPS53-207ENST00000570510 SOHLH2Q9NX45 425 aa10.86□□□□□ -0.67
VPS53-207ENST00000570510 SCHIP1Q9P0W5 487 aaPredicted RBP10.86□□□□□ -0.67
VPS53-207ENST00000570510 ZNF624Q9P2J8 865 aaPredicted RBP10.86□□□□□ -0.67
VPS53-207ENST00000570510 TRIM10Q9UDY6 481 aa10.86□□□□□ -0.67
VPS53-207ENST00000570510 AP4E1Q9UPM8 1137 aa10.86□□□□□ -0.67
VPS53-207ENST00000570510 PCDHGA10Q9Y5H3 936 aa10.86□□□□□ -0.67
VPS53-207ENST00000570510 FHOD1Q9Y613 1164 aa10.86□□□□□ -0.67
VPS53-207ENST00000570510 CCDC168Q8NDH2 2452 aa10.85□□□□□ -0.67
VPS53-207ENST00000570510 A0A1B0GTL3 188 aa10.85□□□□□ -0.67
VPS53-207ENST00000570510 GOLGA6L19H0YKK7 550 aa10.85□□□□□ -0.67
VPS53-207ENST00000570510 MAP3K7O43318 606 aa10.85□□□□□ -0.67
VPS53-207ENST00000570510 LDB2O43679 373 aa10.85□□□□□ -0.67
VPS53-207ENST00000570510 SLC25A14O95258 325 aaPredicted RBP10.85□□□□□ -0.67
VPS53-207ENST00000570510 CALB1P05937 261 aa10.85□□□□□ -0.67
VPS53-207ENST00000570510 ERCC2P18074 760 aa10.85□□□□□ -0.67
VPS53-207ENST00000570510 VCLP18206 1134 aa10.85□□□□□ -0.67
VPS53-207ENST00000570510 CAPN3P20807 821 aa10.85□□□□□ -0.67
VPS53-207ENST00000570510 AGXTP21549 392 aa10.85□□□□□ -0.67
VPS53-207ENST00000570510 IDSP22304 550 aa10.85□□□□□ -0.67
VPS53-207ENST00000570510 SSTR2P30874 369 aa10.85□□□□□ -0.67
VPS53-207ENST00000570510 CLCNKAP51800 687 aa10.85□□□□□ -0.67
VPS53-207ENST00000570510 ZNF143P52747 638 aaPredicted RBP10.85□□□□□ -0.67
VPS53-207ENST00000570510 POLR2FP61218 127 aaKnown RBP10.85□□□□□ -0.67
VPS53-207ENST00000570510 MAXP61244 160 aa10.85□□□□□ -0.67
VPS53-207ENST00000570510 CDR2Q01850 454 aa10.85□□□□□ -0.67
VPS53-207ENST00000570510 LAMB3Q13751 1172 aa10.85□□□□□ -0.67
VPS53-207ENST00000570510 SYCP1Q15431 976 aa10.85□□□□□ -0.67
VPS53-207ENST00000570510 GPR19Q15760 415 aa10.85□□□□□ -0.67
VPS53-207ENST00000570510 PPP6R3Q5H9R7 873 aaPredicted RBP10.85□□□□□ -0.67
VPS53-207ENST00000570510 RALGPS1Q5JS13 557 aa10.85□□□□□ -0.67
VPS53-207ENST00000570510 MARC1Q5VT66 337 aa10.85□□□□□ -0.67
VPS53-207ENST00000570510 IRAK1BP1Q5VVH5 260 aa10.85□□□□□ -0.67
VPS53-207ENST00000570510 DNAJC24Q6P3W2 148 aa10.85□□□□□ -0.67
VPS53-207ENST00000570510 DCUN1D2Q6PH85 259 aa10.85□□□□□ -0.67
VPS53-207ENST00000570510 FAM180AQ6UWF9 173 aa10.85□□□□□ -0.67
VPS53-207ENST00000570510 Q6ZS92 163 aa10.85□□□□□ -0.67
VPS53-207ENST00000570510 RFX8Q6ZV50 586 aa10.85□□□□□ -0.67
VPS53-207ENST00000570510 CUZD1Q86UP6 607 aa10.85□□□□□ -0.67
VPS53-207ENST00000570510 CCHCR1Q8TD31 782 aa10.85□□□□□ -0.67
VPS53-207ENST00000570510 CPLX3Q8WVH0 158 aa10.85□□□□□ -0.67
VPS53-207ENST00000570510 CNDP1Q96KN2 507 aa10.85□□□□□ -0.67
VPS53-207ENST00000570510 NSMCE3Q96MG7 304 aa10.85□□□□□ -0.67
VPS53-207ENST00000570510 MCEEQ96PE7 176 aa10.85□□□□□ -0.67
VPS53-207ENST00000570510 BARD1Q99728 777 aaKnown RBP10.85□□□□□ -0.67
VPS53-207ENST00000570510 MAP3K3Q99759 626 aa10.85□□□□□ -0.67
VPS53-207ENST00000570510 CNPY3Q9BT09 278 aa10.85□□□□□ -0.67
VPS53-207ENST00000570510 RAB33BQ9H082 229 aa10.85□□□□□ -0.67
VPS53-207ENST00000570510 FAM83DQ9H4H8 585 aa10.85□□□□□ -0.67
VPS53-207ENST00000570510 ARFGAP3Q9NP61 516 aa10.85□□□□□ -0.67
VPS53-207ENST00000570510 SEPT11Q9NVA2 429 aaKnown RBP10.85□□□□□ -0.67
VPS53-207ENST00000570510 GPATCH2LQ9NWQ4 482 aa10.85□□□□□ -0.67
VPS53-207ENST00000570510 PKD2L2Q9NZM6 624 aa10.85□□□□□ -0.67
VPS53-207ENST00000570510 NTNG1Q9Y2I2 539 aa10.85□□□□□ -0.67
VPS53-207ENST00000570510 MED13LQ71F56 2210 aa10.85□□□□□ -0.67
VPS53-207ENST00000570510 PCNX1Q96RV3 2341 aa10.84□□□□□ -0.67
VPS53-207ENST00000570510 MTORP42345 2549 aa10.84□□□□□ -0.67
VPS53-207ENST00000570510 SYCE3A1L190 88 aa10.84□□□□□ -0.67
VPS53-207ENST00000570510 TLCD2A6NGC4 264 aa10.84□□□□□ -0.67
VPS53-207ENST00000570510 SIGLEC16A6NMB1 481 aa10.84□□□□□ -0.67
VPS53-207ENST00000570510 OR52A4PA6NMU1 304 aa10.84□□□□□ -0.67
VPS53-207ENST00000570510 EIF3CLB5ME19 914 aaKnown RBP10.84□□□□□ -0.67
VPS53-207ENST00000570510 KMOO15229 486 aa10.84□□□□□ -0.67
VPS53-207ENST00000570510 CLDN7O95471 211 aa10.84□□□□□ -0.67
VPS53-207ENST00000570510 CYP1A1P04798 512 aaPredicted RBP10.84□□□□□ -0.67
VPS53-207ENST00000570510 FERP16591 822 aa10.84□□□□□ -0.67
VPS53-207ENST00000570510 ZNF8P17098 575 aaPredicted RBP10.84□□□□□ -0.67
VPS53-207ENST00000570510 CYP2A7P20853 494 aa10.84□□□□□ -0.67
VPS53-207ENST00000570510 CA4P22748 312 aa10.84□□□□□ -0.67
VPS53-207ENST00000570510 MMP13P45452 471 aa10.84□□□□□ -0.67
VPS53-207ENST00000570510 STC1P52823 247 aa10.84□□□□□ -0.67
VPS53-207ENST00000570510 DRG2P55039 364 aaKnown RBP10.84□□□□□ -0.67
VPS53-207ENST00000570510 NR1I3Q14994 352 aa10.84□□□□□ -0.67
VPS53-207ENST00000570510 HSP90AA4PQ58FG1 418 aa10.84□□□□□ -0.67
VPS53-207ENST00000570510 ZNF517Q6ZMY9 492 aaPredicted RBP10.84□□□□□ -0.67
VPS53-207ENST00000570510 CDH24Q86UP0 819 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms