RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 ADGRG1Q9Y653 693 aa17.68■□□□□ 0.42
CLK3-227ENST00000570296 CCDC88CQ9P219 2028 aa17.67■□□□□ 0.42
CLK3-227ENST00000570296 FAM221AA4D161 298 aa17.67■□□□□ 0.42
CLK3-227ENST00000570296 PDZK1P1A8MUH7 402 aa17.67■□□□□ 0.42
CLK3-227ENST00000570296 PEX12O00623 359 aa17.67■□□□□ 0.42
CLK3-227ENST00000570296 MMP8P22894 467 aa17.67■□□□□ 0.42
CLK3-227ENST00000570296 ARCN1P48444 511 aaKnown RBP17.67■□□□□ 0.42
CLK3-227ENST00000570296 SLC10A7Q0GE19 358 aa17.67■□□□□ 0.42
CLK3-227ENST00000570296 CDC16Q13042 620 aa17.67■□□□□ 0.42
CLK3-227ENST00000570296 PKP1Q13835 747 aa17.67■□□□□ 0.42
CLK3-227ENST00000570296 ZNF169Q14929 603 aaPredicted RBP17.67■□□□□ 0.42
CLK3-227ENST00000570296 TMTC4Q5T4D3 741 aa17.67■□□□□ 0.42
CLK3-227ENST00000570296 SCYL2Q6P3W7 929 aa17.67■□□□□ 0.42
CLK3-227ENST00000570296 ABRAXAS1Q6UWZ7 409 aa17.67■□□□□ 0.42
CLK3-227ENST00000570296 ARHGAP36Q6ZRI8 547 aa17.67■□□□□ 0.42
CLK3-227ENST00000570296 ARHGAP12Q8IWW6 846 aa17.67■□□□□ 0.42
CLK3-227ENST00000570296 BCORP1Q8N888 145 aa17.67■□□□□ 0.42
CLK3-227ENST00000570296 CHTF18Q8WVB6 975 aa17.67■□□□□ 0.42
CLK3-227ENST00000570296 NANOS1Q8WY41 292 aaKnown RBP17.67■□□□□ 0.42
CLK3-227ENST00000570296 CXorf40BQ96DE9 158 aa17.67■□□□□ 0.42
CLK3-227ENST00000570296 DPH2Q9BQC3 489 aaPredicted RBP17.67■□□□□ 0.42
CLK3-227ENST00000570296 DNPEPQ9ULA0 475 aa17.67■□□□□ 0.42
CLK3-227ENST00000570296 GPR89AB7ZAQ6 455 aa17.66■□□□□ 0.42
CLK3-227ENST00000570296 C9J4A7 227 aa17.66■□□□□ 0.42
CLK3-227ENST00000570296 DFFAO00273 331 aa17.66■□□□□ 0.42
CLK3-227ENST00000570296 GPR89BP0CG08 455 aa17.66■□□□□ 0.42
CLK3-227ENST00000570296 KRT3P12035 628 aa17.66■□□□□ 0.42
CLK3-227ENST00000570296 BRAFP15056 766 aa17.66■□□□□ 0.42
CLK3-227ENST00000570296 GPD1P21695 349 aa17.66■□□□□ 0.42
CLK3-227ENST00000570296 STX17P56962 302 aa17.66■□□□□ 0.42
CLK3-227ENST00000570296 SSPNQ14714 243 aa17.66■□□□□ 0.42
CLK3-227ENST00000570296 PLCL1Q15111 1095 aa17.66■□□□□ 0.42
CLK3-227ENST00000570296 ASIC2Q16515 512 aa17.66■□□□□ 0.42
CLK3-227ENST00000570296 HIF1AQ16665 826 aa17.66■□□□□ 0.42
CLK3-227ENST00000570296 DNTTIP2Q5QJE6 756 aaKnown RBP17.66■□□□□ 0.42
CLK3-227ENST00000570296 AGAP9Q5VTM2 703 aa17.66■□□□□ 0.42
CLK3-227ENST00000570296 DUS1LQ6P1R4 473 aaKnown RBP17.66■□□□□ 0.42
CLK3-227ENST00000570296 XKRXQ6PP77 449 aa17.66■□□□□ 0.42
CLK3-227ENST00000570296 WASH2PQ6VEQ5 465 aa17.66■□□□□ 0.42
CLK3-227ENST00000570296 DNAJB14Q8TBM8 379 aa17.66■□□□□ 0.42
CLK3-227ENST00000570296 FAM207AQ9NSI2 230 aaPredicted RBP17.66■□□□□ 0.42
CLK3-227ENST00000570296 PCMTD2Q9NV79 361 aa17.66■□□□□ 0.42
CLK3-227ENST00000570296 ATXN10Q9UBB4 475 aa17.66■□□□□ 0.42
CLK3-227ENST00000570296 CTNND2Q9UQB3 1225 aa17.66■□□□□ 0.42
CLK3-227ENST00000570296 NUP210LQ5VU65 1888 aa17.66■□□□□ 0.42
CLK3-227ENST00000570296 NCOA6Q14686 2063 aaPredicted RBP17.66■□□□□ 0.42
CLK3-227ENST00000570296 ANKRD12Q6UB98 2062 aa17.66■□□□□ 0.42
CLK3-227ENST00000570296 UBA6A0AVT1 1052 aaPredicted RBP17.65■□□□□ 0.42
CLK3-227ENST00000570296 OR52A4PA6NMU1 304 aa17.65■□□□□ 0.42
CLK3-227ENST00000570296 PCDH17O14917 1159 aa17.65■□□□□ 0.42
CLK3-227ENST00000570296 ZBTB11O95625 1053 aaPredicted RBP17.65■□□□□ 0.42
CLK3-227ENST00000570296 ZNF8P17098 575 aaPredicted RBP17.65■□□□□ 0.42
CLK3-227ENST00000570296 ART1P52961 327 aa17.65■□□□□ 0.42
CLK3-227ENST00000570296 SEPT7Q16181 437 aaKnown RBP17.65■□□□□ 0.42
CLK3-227ENST00000570296 INSCQ1MX18 579 aa17.65■□□□□ 0.42
CLK3-227ENST00000570296 HENMT1Q5T8I9 393 aaKnown RBP17.65■□□□□ 0.42
CLK3-227ENST00000570296 PRAMEF17Q5VTA0 474 aa17.65■□□□□ 0.42
CLK3-227ENST00000570296 IGFL2Q6UWQ7 119 aa17.65■□□□□ 0.42
CLK3-227ENST00000570296 CARFQ8N187 725 aa17.65■□□□□ 0.42
CLK3-227ENST00000570296 MGME1Q9BQP7 344 aa17.65■□□□□ 0.42
CLK3-227ENST00000570296 TIMM29Q9BSF4 260 aa17.65■□□□□ 0.42
CLK3-227ENST00000570296 FANCEQ9HB96 536 aa17.65■□□□□ 0.42
CLK3-227ENST00000570296 ABCA4P78363 2273 aa17.65■□□□□ 0.42
CLK3-227ENST00000570296 A0A0J9YYE9 177 aa17.64■□□□□ 0.41
CLK3-227ENST00000570296 FADS2P1A8MWK0 482 aa17.64■□□□□ 0.41
CLK3-227ENST00000570296 CCL21O00585 134 aa17.64■□□□□ 0.41
CLK3-227ENST00000570296 KLF7O75840 302 aaPredicted RBP17.64■□□□□ 0.41
CLK3-227ENST00000570296 FGFR1OPO95684 399 aaKnown RBP17.64■□□□□ 0.41
CLK3-227ENST00000570296 TRBC1P01850 177 aa17.64■□□□□ 0.41
CLK3-227ENST00000570296 AGAP20933 346 aa17.64■□□□□ 0.41
CLK3-227ENST00000570296 FECHP22830 423 aa17.64■□□□□ 0.41
CLK3-227ENST00000570296 KCNK10P57789 538 aa17.64■□□□□ 0.41
CLK3-227ENST00000570296 TLE4Q04727 773 aa17.64■□□□□ 0.41
CLK3-227ENST00000570296 ABRQ12979 859 aa17.64■□□□□ 0.41
CLK3-227ENST00000570296 TLR1Q15399 786 aa17.64■□□□□ 0.41
CLK3-227ENST00000570296 NOP9Q86U38 636 aaKnown RBP17.64■□□□□ 0.41
CLK3-227ENST00000570296 FMR1NBQ8N0W7 255 aaPredicted RBP17.64■□□□□ 0.41
CLK3-227ENST00000570296 PGBD5Q8N414 524 aa17.64■□□□□ 0.41
CLK3-227ENST00000570296 WDR24Q96S15 920 aa17.64■□□□□ 0.41
CLK3-227ENST00000570296 OR2AG1Q9H205 316 aa17.64■□□□□ 0.41
CLK3-227ENST00000570296 ACTR5Q9H9F9 607 aaPredicted RBP17.64■□□□□ 0.41
CLK3-227ENST00000570296 ATP13A2Q9NQ11 1180 aa17.64■□□□□ 0.41
CLK3-227ENST00000570296 P4HTMQ9NXG6 502 aa17.64■□□□□ 0.41
CLK3-227ENST00000570296 SLC23A2Q9UGH3 650 aa17.64■□□□□ 0.41
CLK3-227ENST00000570296 FLNAP21333 2647 aaKnown RBP17.64■□□□□ 0.41
CLK3-227ENST00000570296 NSD1Q96L73 2696 aaPredicted RBP17.64■□□□□ 0.41
CLK3-227ENST00000570296 TRGV8A0A0C4DH27 118 aa17.63■□□□□ 0.41
CLK3-227ENST00000570296 EIF3CLB5ME19 914 aaKnown RBP17.63■□□□□ 0.41
CLK3-227ENST00000570296 EEF2KO00418 725 aaKnown RBP17.63■□□□□ 0.41
CLK3-227ENST00000570296 CHUKO15111 745 aa17.63■□□□□ 0.41
CLK3-227ENST00000570296 CCP110O43303 1012 aa17.63■□□□□ 0.41
CLK3-227ENST00000570296 VEGFDO43915 354 aa17.63■□□□□ 0.41
CLK3-227ENST00000570296 FZD6O60353 706 aa17.63■□□□□ 0.41
CLK3-227ENST00000570296 MMEP08473 750 aa17.63■□□□□ 0.41
CLK3-227ENST00000570296 PDHA1P08559 390 aa17.63■□□□□ 0.41
CLK3-227ENST00000570296 ZNF7P17097 686 aaPredicted RBP17.63■□□□□ 0.41
CLK3-227ENST00000570296 TDGF1P3P51864 188 aa17.63■□□□□ 0.41
CLK3-227ENST00000570296 TDRD12Q587J7 1177 aaKnown RBP17.63■□□□□ 0.41
CLK3-227ENST00000570296 ZNF324BQ6AW86 544 aaPredicted RBP17.63■□□□□ 0.41
CLK3-227ENST00000570296 ISM2Q6H9L7 571 aa17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms