RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 ZDHHC20Q5W0Z9 365 aa16.82■□□□□ 0.28
CLN3-216ENST00000565316 BRSK1Q8TDC3 778 aa16.82■□□□□ 0.28
CLN3-216ENST00000565316 KLHL6Q8WZ60 621 aa16.82■□□□□ 0.28
CLN3-216ENST00000565316 TGM7Q96PF1 710 aa16.82■□□□□ 0.28
CLN3-216ENST00000565316 RAB33BQ9H082 229 aa16.82■□□□□ 0.28
CLN3-216ENST00000565316 HYOU1Q9Y4L1 999 aa16.82■□□□□ 0.28
CLN3-216ENST00000565316 NAV2Q8IVL1 2488 aa16.82■□□□□ 0.28
CLN3-216ENST00000565316 LRRK2Q5S007 2527 aa16.82■□□□□ 0.28
CLN3-216ENST00000565316 GOLGA6L3A6NEY3 463 aa16.81■□□□□ 0.28
CLN3-216ENST00000565316 OR52A4PA6NMU1 304 aa16.81■□□□□ 0.28
CLN3-216ENST00000565316 ARHGAP6O43182 974 aa16.81■□□□□ 0.28
CLN3-216ENST00000565316 PSTPIP1O43586 416 aa16.81■□□□□ 0.28
CLN3-216ENST00000565316 CST8O60676 142 aa16.81■□□□□ 0.28
CLN3-216ENST00000565316 PRKAR1AP10644 381 aa16.81■□□□□ 0.28
CLN3-216ENST00000565316 VCLP18206 1134 aa16.81■□□□□ 0.28
CLN3-216ENST00000565316 NFKB1P19838 968 aa16.81■□□□□ 0.28
CLN3-216ENST00000565316 PTMSP20962 102 aa16.81■□□□□ 0.28
CLN3-216ENST00000565316 OAS2P29728 719 aaKnown RBP16.81■□□□□ 0.28
CLN3-216ENST00000565316 DRG2P55039 364 aaKnown RBP16.81■□□□□ 0.28
CLN3-216ENST00000565316 HADHBP55084 474 aaKnown RBP16.81■□□□□ 0.28
CLN3-216ENST00000565316 ADCY2Q08462 1091 aa16.81■□□□□ 0.28
CLN3-216ENST00000565316 GPR18Q14330 331 aa16.81■□□□□ 0.28
CLN3-216ENST00000565316 SPOCD1Q6ZMY3 1216 aa16.81■□□□□ 0.28
CLN3-216ENST00000565316 STARD8Q92502 1023 aa16.81■□□□□ 0.28
CLN3-216ENST00000565316 RSC1A1Q92681 617 aa16.81■□□□□ 0.28
CLN3-216ENST00000565316 MRGPRX2Q96LB1 330 aa16.81■□□□□ 0.28
CLN3-216ENST00000565316 FCRL5Q96RD9 977 aa16.81■□□□□ 0.28
CLN3-216ENST00000565316 ULBP3Q9BZM4 244 aa16.81■□□□□ 0.28
CLN3-216ENST00000565316 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP16.81■□□□□ 0.28
CLN3-216ENST00000565316 HACD3Q9P035 362 aa16.81■□□□□ 0.28
CLN3-216ENST00000565316 IL17CQ9P0M4 197 aa16.81■□□□□ 0.28
CLN3-216ENST00000565316 SEMA5BQ9P283 1151 aa16.81■□□□□ 0.28
CLN3-216ENST00000565316 WDR37Q9Y2I8 494 aa16.81■□□□□ 0.28
CLN3-216ENST00000565316 RPS6KL1Q9Y6S9 549 aa16.81■□□□□ 0.28
CLN3-216ENST00000565316 COL12A1Q99715 3063 aa16.81■□□□□ 0.28
CLN3-216ENST00000565316 SPOPO43791 374 aa16.8■□□□□ 0.28
CLN3-216ENST00000565316 KIF1CO43896 1103 aaKnown RBP16.8■□□□□ 0.28
CLN3-216ENST00000565316 TNNT1P13805 278 aa16.8■□□□□ 0.28
CLN3-216ENST00000565316 ZNF28P17035 718 aa16.8■□□□□ 0.28
CLN3-216ENST00000565316 F8A1P23610 371 aa16.8■□□□□ 0.28
CLN3-216ENST00000565316 SH3BP2P78314 561 aa16.8■□□□□ 0.28
CLN3-216ENST00000565316 FOXM1Q08050 763 aa16.8■□□□□ 0.28
CLN3-216ENST00000565316 DMPKQ09013 629 aa16.8■□□□□ 0.28
CLN3-216ENST00000565316 NOMO1Q15155 1222 aa16.8■□□□□ 0.28
CLN3-216ENST00000565316 C6orf15Q6UXA7 325 aaPredicted RBP16.8■□□□□ 0.28
CLN3-216ENST00000565316 TRAPPC5Q8IUR0 188 aa16.8■□□□□ 0.28
CLN3-216ENST00000565316 APOBEC4Q8WW27 367 aaKnown RBP16.8■□□□□ 0.28
CLN3-216ENST00000565316 CXorf40BQ96DE9 158 aa16.8■□□□□ 0.28
CLN3-216ENST00000565316 ZDHHC12Q96GR4 267 aa16.8■□□□□ 0.28
CLN3-216ENST00000565316 OXNAD1Q96HP4 312 aaPredicted RBP16.8■□□□□ 0.28
CLN3-216ENST00000565316 VAT1Q99536 393 aa16.8■□□□□ 0.28
CLN3-216ENST00000565316 ANP32EQ9BTT0 268 aa16.8■□□□□ 0.28
CLN3-216ENST00000565316 ALG6Q9Y672 507 aa16.8■□□□□ 0.28
CLN3-216ENST00000565316 DNMT3AQ9Y6K1 912 aaPredicted RBP16.8■□□□□ 0.28
CLN3-216ENST00000565316 GAPDHSO14556 408 aaPredicted RBP16.79■□□□□ 0.28
CLN3-216ENST00000565316 FGF5P12034 268 aa16.79■□□□□ 0.28
CLN3-216ENST00000565316 TCN2P20062 427 aa16.79■□□□□ 0.28
CLN3-216ENST00000565316 SPAM1P38567 509 aa16.79■□□□□ 0.28
CLN3-216ENST00000565316 CHRNA4P43681 627 aa16.79■□□□□ 0.28
CLN3-216ENST00000565316 SEPHS1P49903 392 aa16.79■□□□□ 0.28
CLN3-216ENST00000565316 TLE1Q04724 770 aa16.79■□□□□ 0.28
CLN3-216ENST00000565316 TBX2Q13207 712 aaPredicted RBP16.79■□□□□ 0.28
CLN3-216ENST00000565316 GTF2H3Q13889 308 aa16.79■□□□□ 0.28
CLN3-216ENST00000565316 SLC1A5Q15758 541 aa16.79■□□□□ 0.28
CLN3-216ENST00000565316 CHRNA6Q15825 494 aa16.79■□□□□ 0.28
CLN3-216ENST00000565316 LARP7Q4G0J3 582 aaKnown RBP eCLIP16.79■□□□□ 0.28
CLN3-216ENST00000565316 LDLRAP1Q5SW96 308 aa16.79■□□□□ 0.28
CLN3-216ENST00000565316 CACHD1Q5VU97 1274 aa16.79■□□□□ 0.28
CLN3-216ENST00000565316 AMZ2Q86W34 360 aa16.79■□□□□ 0.28
CLN3-216ENST00000565316 PTRH1Q86Y79 214 aaKnown RBP16.79■□□□□ 0.28
CLN3-216ENST00000565316 CNGA4Q8IV77 575 aa16.79■□□□□ 0.28
CLN3-216ENST00000565316 KATNAL2Q8IYT4 538 aa16.79■□□□□ 0.28
CLN3-216ENST00000565316 ZNF567Q8N184 647 aa16.79■□□□□ 0.28
CLN3-216ENST00000565316 RASGEF1AQ8N9B8 481 aa16.79■□□□□ 0.28
CLN3-216ENST00000565316 DDHD1Q8NEL9 900 aa16.79■□□□□ 0.28
CLN3-216ENST00000565316 GDAP1Q8TB36 358 aa16.79■□□□□ 0.28
CLN3-216ENST00000565316 COL26A1Q96A83 441 aa16.79■□□□□ 0.28
CLN3-216ENST00000565316 OR6C1Q96RD1 312 aa16.79■□□□□ 0.28
CLN3-216ENST00000565316 NBASA2RRP1 2371 aa16.79■□□□□ 0.28
CLN3-216ENST00000565316 hCG_1818297A0A087WSY0 165 aa16.78■□□□□ 0.28
CLN3-216ENST00000565316 UGT1A9O60656 530 aa16.78■□□□□ 0.28
CLN3-216ENST00000565316 POP7O75817 140 aaKnown RBP16.78■□□□□ 0.28
CLN3-216ENST00000565316 RASSF9O75901 435 aa16.78■□□□□ 0.28
CLN3-216ENST00000565316 NELFEP18615 380 aaKnown RBP16.78■□□□□ 0.28
CLN3-216ENST00000565316 UGT1A6P19224 532 aa16.78■□□□□ 0.28
CLN3-216ENST00000565316 HLA-DPA1P20036 260 aa16.78■□□□□ 0.28
CLN3-216ENST00000565316 UGT1A1P22309 533 aa16.78■□□□□ 0.28
CLN3-216ENST00000565316 UGT1A4P22310 534 aa16.78■□□□□ 0.28
CLN3-216ENST00000565316 CA5AP35218 305 aa16.78■□□□□ 0.28
CLN3-216ENST00000565316 HALP42357 657 aa16.78■□□□□ 0.28
CLN3-216ENST00000565316 CTSCP53634 463 aa16.78■□□□□ 0.28
CLN3-216ENST00000565316 MPP3Q13368 585 aa16.78■□□□□ 0.28
CLN3-216ENST00000565316 LLGL1Q15334 1064 aa16.78■□□□□ 0.28
CLN3-216ENST00000565316 DEFB109BQ30KR1 87 aa16.78■□□□□ 0.28
CLN3-216ENST00000565316 TFDP3Q5H9I0 405 aa16.78■□□□□ 0.28
CLN3-216ENST00000565316 KAZNQ674X7 775 aa16.78■□□□□ 0.28
CLN3-216ENST00000565316 RCOR2Q8IZ40 523 aa16.78■□□□□ 0.28
CLN3-216ENST00000565316 SLC25A41Q8N5S1 370 aa16.78■□□□□ 0.28
CLN3-216ENST00000565316 GALNT6Q8NCL4 622 aa16.78■□□□□ 0.28
CLN3-216ENST00000565316 C9orf43Q8TAL5 461 aaPredicted RBP16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms