RNA–Protein interactions for RNA: ENST00000564540.5

UBR1-205, Transcript of ubiquitin protein ligase E3 component n-recognin 1, humanhuman

TSL 3

Gene UBR1, Length 735 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR1-205ENST00000564540 CCDC6Q16204 474 aa4.47□□□□□ -1.69
UBR1-205ENST00000564540 RBMS3Q6XE24 437 aaKnown RBP4.47□□□□□ -1.69
UBR1-205ENST00000564540 GCSAMQ8N6F7 178 aa4.47□□□□□ -1.69
UBR1-205ENST00000564540 C1orf52Q8N6N3 182 aaKnown RBP4.47□□□□□ -1.69
UBR1-205ENST00000564540 RDM1Q8NG50 284 aa4.47□□□□□ -1.69
UBR1-205ENST00000564540 CTCFLQ8NI51 663 aaPredicted RBP4.47□□□□□ -1.69
UBR1-205ENST00000564540 GSDMBQ8TAX9 411 aa4.47□□□□□ -1.69
UBR1-205ENST00000564540 PPP4R1Q8TF05 950 aa4.47□□□□□ -1.69
UBR1-205ENST00000564540 UCMAQ8WVF2 138 aa4.47□□□□□ -1.69
UBR1-205ENST00000564540 LGALS12Q96DT0 336 aa4.47□□□□□ -1.69
UBR1-205ENST00000564540 PSD2Q9BQI7 771 aa4.47□□□□□ -1.69
UBR1-205ENST00000564540 PTTG2Q9NZH5 202 aa4.47□□□□□ -1.69
UBR1-205ENST00000564540 ORC3Q9UBD5 711 aaPredicted RBP4.47□□□□□ -1.69
UBR1-205ENST00000564540 AASSQ9UDR5 926 aa4.47□□□□□ -1.69
UBR1-205ENST00000564540 CORO1CQ9ULV4 474 aaPredicted RBP4.47□□□□□ -1.69
UBR1-205ENST00000564540 KIAA1210Q9ULL0 1709 aa4.46□□□□□ -1.69
UBR1-205ENST00000564540 TMEM189-UBE2V1I3L0A0 370 aa4.46□□□□□ -1.7
UBR1-205ENST00000564540 SMAD9O15198 467 aaKnown RBP4.46□□□□□ -1.7
UBR1-205ENST00000564540 ZBTB43O43298 467 aa4.46□□□□□ -1.7
UBR1-205ENST00000564540 BUD23O43709 281 aaKnown RBP4.46□□□□□ -1.7
UBR1-205ENST00000564540 PCDH7O60245 1069 aa4.46□□□□□ -1.7
UBR1-205ENST00000564540 ZNF217O75362 1048 aa4.46□□□□□ -1.7
UBR1-205ENST00000564540 SELLP14151 372 aa4.46□□□□□ -1.7
UBR1-205ENST00000564540 MSH2P43246 934 aa4.46□□□□□ -1.7
UBR1-205ENST00000564540 CTSCP53634 463 aa4.46□□□□□ -1.7
UBR1-205ENST00000564540 LRMPQ12912 555 aa4.46□□□□□ -1.7
UBR1-205ENST00000564540 UBE2V1Q13404 147 aa4.46□□□□□ -1.7
UBR1-205ENST00000564540 EIF4A2Q14240 407 aaKnown RBP4.46□□□□□ -1.7
UBR1-205ENST00000564540 ZSCAN23Q3MJ62 389 aa4.46□□□□□ -1.7
UBR1-205ENST00000564540 ZC2HC1CQ53FD0 456 aaPredicted RBP4.46□□□□□ -1.7
UBR1-205ENST00000564540 HSP90AB4PQ58FF6 505 aa4.46□□□□□ -1.7
UBR1-205ENST00000564540 ACSM2BQ68CK6 577 aa4.46□□□□□ -1.7
UBR1-205ENST00000564540 PACS1Q6VY07 963 aa4.46□□□□□ -1.7
UBR1-205ENST00000564540 C15orf39Q6ZRI6 1047 aa4.46□□□□□ -1.7
UBR1-205ENST00000564540 TRPC4APQ8TEL6 797 aa4.46□□□□□ -1.7
UBR1-205ENST00000564540 ZNF473Q8WTR7 871 aaKnown RBP4.46□□□□□ -1.7
UBR1-205ENST00000564540 SENP5Q96HI0 755 aaPredicted RBP4.46□□□□□ -1.7
UBR1-205ENST00000564540 GAD1Q99259 594 aa4.46□□□□□ -1.7
UBR1-205ENST00000564540 BARHL1Q9BZE3 327 aa4.46□□□□□ -1.7
UBR1-205ENST00000564540 SEMA6AQ9H2E6 1030 aa4.46□□□□□ -1.7
UBR1-205ENST00000564540 DIAPH3Q9NSV4 1193 aa4.46□□□□□ -1.7
UBR1-205ENST00000564540 ACAD8Q9UKU7 415 aa4.46□□□□□ -1.7
UBR1-205ENST00000564540 DUXAA6NLW8 204 aa4.45□□□□□ -1.7
UBR1-205ENST00000564540 J3QR06 171 aa4.45□□□□□ -1.7
UBR1-205ENST00000564540 OGG1O15527 345 aa4.45□□□□□ -1.7
UBR1-205ENST00000564540 RNASEH2AO75792 299 aaKnown RBP4.45□□□□□ -1.7
UBR1-205ENST00000564540 TSHBP01222 138 aa4.45□□□□□ -1.7
UBR1-205ENST00000564540 HIST1H2ABP04908 130 aa4.45□□□□□ -1.7
UBR1-205ENST00000564540 CD48P09326 243 aa4.45□□□□□ -1.7
UBR1-205ENST00000564540 ERVK-10P10266 1014 aa4.45□□□□□ -1.7
UBR1-205ENST00000564540 HIST1H2ADP20671 130 aa4.45□□□□□ -1.7
UBR1-205ENST00000564540 PSMA4P25789 261 aaKnown RBP4.45□□□□□ -1.7
UBR1-205ENST00000564540 CHRNB4P30926 498 aa4.45□□□□□ -1.7
UBR1-205ENST00000564540 GPR143P51810 404 aa4.45□□□□□ -1.7
UBR1-205ENST00000564540 ERVK11-1P61568 191 aa4.45□□□□□ -1.7
UBR1-205ENST00000564540 SPOCK1Q08629 439 aa4.45□□□□□ -1.7
UBR1-205ENST00000564540 HAUS3Q68CZ6 603 aa4.45□□□□□ -1.7
UBR1-205ENST00000564540 HIST3H2AQ7L7L0 130 aa4.45□□□□□ -1.7
UBR1-205ENST00000564540 APLFQ8IW19 511 aaPredicted RBP4.45□□□□□ -1.7
UBR1-205ENST00000564540 CEP97Q8IW35 865 aa4.45□□□□□ -1.7
UBR1-205ENST00000564540 TRIM58Q8NG06 486 aa4.45□□□□□ -1.7
UBR1-205ENST00000564540 PRMT6Q96LA8 375 aaPredicted RBP4.45□□□□□ -1.7
UBR1-205ENST00000564540 GFRA4Q9GZZ7 299 aa4.45□□□□□ -1.7
UBR1-205ENST00000564540 MUC13Q9H3R2 512 aa4.45□□□□□ -1.7
UBR1-205ENST00000564540 APOBEC3GQ9HC16 384 aaKnown RBP4.45□□□□□ -1.7
UBR1-205ENST00000564540 SLC38A7Q9NVC3 462 aa4.45□□□□□ -1.7
UBR1-205ENST00000564540 RCC2Q9P258 522 aaKnown RBP4.45□□□□□ -1.7
UBR1-205ENST00000564540 TSPYL4Q9UJ04 414 aa4.45□□□□□ -1.7
UBR1-205ENST00000564540 MTMR6Q9Y217 621 aa4.45□□□□□ -1.7
UBR1-205ENST00000564540 YIPF1Q9Y548 306 aa4.45□□□□□ -1.7
UBR1-205ENST00000564540 PLK4O00444 970 aa4.44□□□□□ -1.7
UBR1-205ENST00000564540 SCAMP1O15126 338 aa4.44□□□□□ -1.7
UBR1-205ENST00000564540 GCNT3O95395 438 aa4.44□□□□□ -1.7
UBR1-205ENST00000564540 CAVIN2O95810 425 aa4.44□□□□□ -1.7
UBR1-205ENST00000564540 PRSS56P0CW18 603 aa4.44□□□□□ -1.7
UBR1-205ENST00000564540 MMP15P51511 669 aa4.44□□□□□ -1.7
UBR1-205ENST00000564540 GNB1P62873 340 aa4.44□□□□□ -1.7
UBR1-205ENST00000564540 PPIGQ13427 754 aaKnown RBP eCLIP4.44□□□□□ -1.7
UBR1-205ENST00000564540 KRT32Q14532 448 aa4.44□□□□□ -1.7
UBR1-205ENST00000564540 MVPQ14764 893 aaKnown RBP4.44□□□□□ -1.7
UBR1-205ENST00000564540 FCN2Q15485 313 aa4.44□□□□□ -1.7
UBR1-205ENST00000564540 DUOXA1Q1HG43 343 aa4.44□□□□□ -1.7
UBR1-205ENST00000564540 ASTE1Q2TB18 679 aaPredicted RBP4.44□□□□□ -1.7
UBR1-205ENST00000564540 NDUFAF5Q5TEU4 345 aa4.44□□□□□ -1.7
UBR1-205ENST00000564540 FAM53AQ6NSI3 398 aaPredicted RBP4.44□□□□□ -1.7
UBR1-205ENST00000564540 CFAP77Q6ZQR2 320 aa4.44□□□□□ -1.7
UBR1-205ENST00000564540 ZNF534Q76KX8 674 aa4.44□□□□□ -1.7
UBR1-205ENST00000564540 PTOV1Q86YD1 416 aa4.44□□□□□ -1.7
UBR1-205ENST00000564540 OR2A14Q96R47 310 aa4.44□□□□□ -1.7
UBR1-205ENST00000564540 UNC45AQ9H3U1 944 aa4.44□□□□□ -1.7
UBR1-205ENST00000564540 MBNL1Q9NR56 388 aaKnown RBP4.44□□□□□ -1.7
UBR1-205ENST00000564540 DBNLQ9UJU6 430 aaKnown RBP4.44□□□□□ -1.7
UBR1-205ENST00000564540 KCNK7Q9Y2U2 307 aa4.44□□□□□ -1.7
UBR1-205ENST00000564540 SNED1Q8TER0 1413 aa4.44□□□□□ -1.7
UBR1-205ENST00000564540 OR2M5A3KFT3 312 aa4.43□□□□□ -1.7
UBR1-205ENST00000564540 KRTAP9-6A8MVA2 160 aa4.43□□□□□ -1.7
UBR1-205ENST00000564540 H0YIN7 160 aa4.43□□□□□ -1.7
UBR1-205ENST00000564540 MBD4O95243 580 aa4.43□□□□□ -1.7
UBR1-205ENST00000564540 DDX58O95786 925 aaKnown RBP4.43□□□□□ -1.7
UBR1-205ENST00000564540 ZNF883P0CG24 379 aa4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms