RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 CPA1P15085 419 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 H2AFXP16104 143 aaPredicted RBP5.08□□□□□ -1.6
VPS35-205ENST00000563984 ITGAXP20702 1163 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 TNFSF4P23510 183 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 ITPKBP27987 946 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 PDIA3P30101 505 aaKnown RBP5.08□□□□□ -1.6
VPS35-205ENST00000563984 SLC7A1P30825 629 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 TAGLN2P37802 199 aaKnown RBP5.08□□□□□ -1.6
VPS35-205ENST00000563984 VIPR2P41587 438 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 PTPN9P43378 593 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 RABIFP47224 123 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 SLC9A3P48764 834 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 PRIM2P49643 509 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 ZNF81P51508 661 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 HSD17B4P51659 736 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 ARHGDIAP52565 204 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 SLC7A2P52569 658 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 RAD23AP54725 363 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 CASP6P55212 293 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 CDH6P55285 790 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 TAS2R40P59535 323 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 GPX6P59796 221 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 RAB1AP62820 205 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 TRA2BP62995 288 aaKnown RBP5.08□□□□□ -1.6
VPS35-205ENST00000563984 STK4Q13043 487 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 MAPK7Q13164 816 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 DRP2Q13474 957 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 SEMA5AQ13591 1074 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 ACVR2BQ13705 512 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 TBCCQ15814 346 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 SGSM1Q2NKQ1 1148 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 TMEM31Q5JXX7 168 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 ZNF618Q5T7W0 954 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 TTC22Q5TAA0 569 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 ATPAF1Q5TC12 328 aaPredicted RBP5.08□□□□□ -1.6
VPS35-205ENST00000563984 IZUMO3Q5VZ72 239 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 DENND2CQ68D51 928 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 ANKRD40Q6AI12 368 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 DARS2Q6PI48 645 aaKnown RBP5.08□□□□□ -1.6
VPS35-205ENST00000563984 APOA5Q6Q788 366 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 PET117Q6UWS5 81 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 TMEM108Q6UXF1 575 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 CRELD2Q6UXH1 353 aaPredicted RBP5.08□□□□□ -1.6
VPS35-205ENST00000563984 CYP4V2Q6ZWL3 525 aaPredicted RBP5.08□□□□□ -1.6
VPS35-205ENST00000563984 CCDC36Q8IYA8 594 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 KIAA2013Q8IYS2 634 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 CACNA2D3Q8IZS8 1091 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 ANKRD13CQ8N6S4 541 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 MRPL43Q8N983 215 aaKnown RBP5.08□□□□□ -1.6
VPS35-205ENST00000563984 SETD9Q8NE22 299 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 DDHD1Q8NEL9 900 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 TRPV3Q8NET8 790 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 Q8NFD4 153 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 OR13C2Q8NGS9 318 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 ADAMTS16Q8TE57 1224 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 CAPSLQ8WWF8 208 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 SLC13A3Q8WWT9 602 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 CCDC127Q96BQ5 260 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 FAM122AQ96E09 287 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 ZBED3Q96IU2 234 aaPredicted RBP5.08□□□□□ -1.6
VPS35-205ENST00000563984 PANX2Q96RD6 677 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 KCNS3Q9BQ31 491 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 TDRD1Q9BXT4 1180 aaKnown RBP5.08□□□□□ -1.6
VPS35-205ENST00000563984 UNKQ9C0B0 810 aaKnown RBP5.08□□□□□ -1.6
VPS35-205ENST00000563984 USP44Q9H0E7 712 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 LHX5Q9H2C1 402 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 SP140LQ9H930 580 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 ZNF287Q9HBT7 754 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 PCDH9Q9HC56 1237 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 SERTAD4Q9NUC0 356 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 INTS9Q9NV88 658 aaKnown RBP5.08□□□□□ -1.6
VPS35-205ENST00000563984 TMEM184CQ9NVA4 438 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 GID8Q9NWU2 228 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 FAM120CQ9NX05 1096 aaKnown RBP5.08□□□□□ -1.6
VPS35-205ENST00000563984 TMOD3Q9NYL9 352 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 TMOD2Q9NZR1 351 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 ADAM21Q9UKJ8 722 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 CAPN11Q9UMQ6 739 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 ENTPD4Q9Y227 616 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 SLC22A14Q9Y267 594 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 ERGIC3Q9Y282 383 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 CLDN16Q9Y5I7 305 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 MAD1L1Q9Y6D9 718 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 ADCY9O60503 1353 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 ACEP12821 1306 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 A0A1B0GVG6 124 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 A0A1W2PQ67 120 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 KANSL1LA0AUZ9 987 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 DENND3A2RUS2 1198 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 C5orf51A6NDU8 294 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 SMCO2A6NFE2 343 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 E9PI62 339 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 ADAMTS3O15072 1205 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 DCLK1O15075 740 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 CRCPO75575 148 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 SERPINI2O75830 405 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 BEST1O76090 585 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 CAMTA2O94983 1202 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 SEMA3DO95025 777 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 IL1AP01583 271 aa5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms