RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 NCKIPSDQ9NZQ3 722 aa20.99■□□□□ 0.95
CLN3-209ENST00000561689 RNF112Q9ULX5 631 aa20.99■□□□□ 0.95
CLN3-209ENST00000561689 COL4A2P08572 1712 aa20.99■□□□□ 0.95
CLN3-209ENST00000561689 F8W8V4 182 aa20.99■□□□□ 0.95
CLN3-209ENST00000561689 SOD1P00441 154 aa20.99■□□□□ 0.95
CLN3-209ENST00000561689 CHRNGP07510 517 aa20.99■□□□□ 0.95
CLN3-209ENST00000561689 OR56A5P0C7T3 313 aa20.99■□□□□ 0.95
CLN3-209ENST00000561689 MSH3P20585 1137 aa20.99■□□□□ 0.95
CLN3-209ENST00000561689 DNAJB13P59910 316 aa20.99■□□□□ 0.95
CLN3-209ENST00000561689 LEXMQ3ZCV2 418 aa20.99■□□□□ 0.95
CLN3-209ENST00000561689 SLC44A4Q53GD3 710 aa20.99■□□□□ 0.95
CLN3-209ENST00000561689 ACSBG2Q5FVE4 666 aa20.99■□□□□ 0.95
CLN3-209ENST00000561689 PIWIL4Q7Z3Z4 852 aaKnown RBP20.99■□□□□ 0.95
CLN3-209ENST00000561689 FAM3CQ92520 227 aa20.99■□□□□ 0.95
CLN3-209ENST00000561689 FUBP1Q96AE4 644 aaKnown RBP20.99■□□□□ 0.95
CLN3-209ENST00000561689 VPS35Q96QK1 796 aa20.99■□□□□ 0.95
CLN3-209ENST00000561689 KCNK13Q9HB14 408 aa20.99■□□□□ 0.95
CLN3-209ENST00000561689 PNPOQ9NVS9 261 aa20.99■□□□□ 0.95
CLN3-209ENST00000561689 IGLON5A6NGN9 336 aa20.98■□□□□ 0.95
CLN3-209ENST00000561689 CFAP99D6REC4 459 aa20.98■□□□□ 0.95
CLN3-209ENST00000561689 KERAO60938 352 aa20.98■□□□□ 0.95
CLN3-209ENST00000561689 PCDH8O95206 1070 aa20.98■□□□□ 0.95
CLN3-209ENST00000561689 TPBGLP0DKB5 382 aa20.98■□□□□ 0.95
CLN3-209ENST00000561689 MTHFD2P13995 350 aa20.98■□□□□ 0.95
CLN3-209ENST00000561689 CREB5Q02930 508 aa20.98■□□□□ 0.95
CLN3-209ENST00000561689 ARL13AQ5H913 290 aaPredicted RBP20.98■□□□□ 0.95
CLN3-209ENST00000561689 RAET1GQ6H3X3 334 aa20.98■□□□□ 0.95
CLN3-209ENST00000561689 RAVER1Q8IY67 606 aaKnown RBP20.98■□□□□ 0.95
CLN3-209ENST00000561689 DEFB123Q8N688 67 aa20.98■□□□□ 0.95
CLN3-209ENST00000561689 RPLP0P6Q8NHW5 317 aa20.98■□□□□ 0.95
CLN3-209ENST00000561689 CCDC126Q96EE4 140 aa20.98■□□□□ 0.95
CLN3-209ENST00000561689 DRC3Q9H069 523 aa20.98■□□□□ 0.95
CLN3-209ENST00000561689 FBXL12Q9NXK8 326 aa20.98■□□□□ 0.95
CLN3-209ENST00000561689 SMIM24O75264 130 aa20.97■□□□□ 0.95
CLN3-209ENST00000561689 CCR7P32248 378 aa20.97■□□□□ 0.95
CLN3-209ENST00000561689 MRPS21P82921 87 aaKnown RBP20.97■□□□□ 0.95
CLN3-209ENST00000561689 ASPHQ12797 758 aa20.97■□□□□ 0.95
CLN3-209ENST00000561689 TDGQ13569 410 aa20.97■□□□□ 0.95
CLN3-209ENST00000561689 RCN2Q14257 317 aa20.97■□□□□ 0.95
CLN3-209ENST00000561689 CFAP157Q5JU67 520 aa20.97■□□□□ 0.95
CLN3-209ENST00000561689 RPS27LQ71UM5 84 aaKnown RBP20.97■□□□□ 0.95
CLN3-209ENST00000561689 TRMT11Q7Z4G4 463 aaKnown RBP20.97■□□□□ 0.95
CLN3-209ENST00000561689 PIWIL2Q8TC59 973 aaKnown RBP20.97■□□□□ 0.95
CLN3-209ENST00000561689 AGR3Q8TD06 166 aa20.97■□□□□ 0.95
CLN3-209ENST00000561689 PANX3Q96QZ0 392 aa20.97■□□□□ 0.95
CLN3-209ENST00000561689 SHCBP1LQ9BZQ2 653 aa20.97■□□□□ 0.95
CLN3-209ENST00000561689 CNOT6Q9ULM6 557 aaKnown RBP20.97■□□□□ 0.95
CLN3-209ENST00000561689 OR2AG2A6NM03 316 aa20.97■□□□□ 0.95
CLN3-209ENST00000561689 SUPT3HB4E1H0 165 aa20.97■□□□□ 0.95
CLN3-209ENST00000561689 TSPAN6O43657 245 aa20.97■□□□□ 0.95
CLN3-209ENST00000561689 SUPT3HO75486 399 aa20.97■□□□□ 0.95
CLN3-209ENST00000561689 SRFP11831 508 aa20.97■□□□□ 0.95
CLN3-209ENST00000561689 GLULP15104 373 aa20.97■□□□□ 0.95
CLN3-209ENST00000561689 IL9P15248 144 aa20.97■□□□□ 0.95
CLN3-209ENST00000561689 GPR1P46091 355 aa20.97■□□□□ 0.95
CLN3-209ENST00000561689 TFF2Q03403 129 aa20.97■□□□□ 0.95
CLN3-209ENST00000561689 PFKFB4Q16877 469 aa20.97■□□□□ 0.95
CLN3-209ENST00000561689 LDLRAP1Q5SW96 308 aa20.97■□□□□ 0.95
CLN3-209ENST00000561689 ZNF765Q7L2R6 523 aa20.97■□□□□ 0.95
CLN3-209ENST00000561689 TRIM74Q86UV6 250 aa20.97■□□□□ 0.95
CLN3-209ENST00000561689 SLC22A9Q8IVM8 553 aa20.97■□□□□ 0.95
CLN3-209ENST00000561689 BEND7Q8N7W2 519 aaPredicted RBP20.97■□□□□ 0.95
CLN3-209ENST00000561689 ZNF781Q8N8C0 355 aa20.97■□□□□ 0.95
CLN3-209ENST00000561689 PTGR2Q8N8N7 351 aaPredicted RBP20.97■□□□□ 0.95
CLN3-209ENST00000561689 PDLIM5Q96HC4 596 aaKnown RBP20.97■□□□□ 0.95
CLN3-209ENST00000561689 TMEM120AQ9BXJ8 343 aa20.97■□□□□ 0.95
CLN3-209ENST00000561689 ABCF3Q9NUQ8 709 aa20.97■□□□□ 0.95
CLN3-209ENST00000561689 USH1CQ9Y6N9 552 aa20.97■□□□□ 0.95
CLN3-209ENST00000561689 TRIOO75962 3097 aa20.97■□□□□ 0.95
CLN3-209ENST00000561689 CKAP5Q14008 2032 aa20.97■□□□□ 0.95
CLN3-209ENST00000561689 PLXNB3Q9ULL4 1909 aa20.96■□□□□ 0.95
CLN3-209ENST00000561689 NCF1BA6NI72 391 aaPredicted RBP20.96■□□□□ 0.95
CLN3-209ENST00000561689 NCF1CA8MVU1 366 aaPredicted RBP20.96■□□□□ 0.95
CLN3-209ENST00000561689 AP1G1O43747 822 aa20.96■□□□□ 0.95
CLN3-209ENST00000561689 SGTAO43765 313 aa20.96■□□□□ 0.95
CLN3-209ENST00000561689 MAGEC1O60732 1142 aa20.96■□□□□ 0.95
CLN3-209ENST00000561689 DNTTP04053 509 aa20.96■□□□□ 0.95
CLN3-209ENST00000561689 NCF1P14598 390 aaPredicted RBP20.96■□□□□ 0.95
CLN3-209ENST00000561689 DGKAP23743 735 aa20.96■□□□□ 0.95
CLN3-209ENST00000561689 RGS4P49798 205 aa20.96■□□□□ 0.95
CLN3-209ENST00000561689 ARFIP2P53365 341 aa20.96■□□□□ 0.95
CLN3-209ENST00000561689 CORO7P57737 925 aa20.96■□□□□ 0.95
CLN3-209ENST00000561689 SEL1L3Q68CR1 1132 aa20.96■□□□□ 0.95
CLN3-209ENST00000561689 SPATS2Q86XZ4 545 aaKnown RBP20.96■□□□□ 0.95
CLN3-209ENST00000561689 RASGEF1AQ8N9B8 481 aa20.96■□□□□ 0.95
CLN3-209ENST00000561689 CD248Q9HCU0 757 aa20.96■□□□□ 0.95
CLN3-209ENST00000561689 KCTD5Q9NXV2 234 aa20.96■□□□□ 0.95
CLN3-209ENST00000561689 NDRG2Q9UN36 371 aaKnown RBP20.96■□□□□ 0.95
CLN3-209ENST00000561689 MYO10Q9HD67 2058 aa20.96■□□□□ 0.95
CLN3-209ENST00000561689 PLXNA2O75051 1894 aa20.96■□□□□ 0.95
CLN3-209ENST00000561689 GFAPP14136 432 aa20.96■□□□□ 0.95
CLN3-209ENST00000561689 MPSTP25325 297 aa20.96■□□□□ 0.95
CLN3-209ENST00000561689 AQP5P55064 265 aa20.96■□□□□ 0.95
CLN3-209ENST00000561689 DPTQ07507 201 aa20.96■□□□□ 0.95
CLN3-209ENST00000561689 CCINQ13939 588 aa20.96■□□□□ 0.95
CLN3-209ENST00000561689 PHYKPLQ8IUZ5 450 aa20.96■□□□□ 0.95
CLN3-209ENST00000561689 LSMEM2Q8N112 164 aa20.96■□□□□ 0.95
CLN3-209ENST00000561689 SLC2A4RGQ9NR83 387 aa20.96■□□□□ 0.95
CLN3-209ENST00000561689 LATS2Q9NRM7 1088 aa20.96■□□□□ 0.95
CLN3-209ENST00000561689 UTP6Q9NYH9 597 aaKnown RBP20.96■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms