RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 IRX4P78413 519 aa9.11□□□□□ -0.95
LDLR-210ENST00000559340 PLOD1Q02809 727 aaPredicted RBP9.11□□□□□ -0.95
LDLR-210ENST00000559340 ILF3Q12906 894 aaKnown RBP eCLIP9.11□□□□□ -0.956e-9■■■□□ 16.2
LDLR-210ENST00000559340 GRIK2Q13002 908 aa9.11□□□□□ -0.95
LDLR-210ENST00000559340 EIF2B5Q13144 721 aaKnown RBP9.11□□□□□ -0.95
LDLR-210ENST00000559340 CTBP1Q13363 440 aa9.11□□□□□ -0.95
LDLR-210ENST00000559340 HLA-BQ31612 363 aa9.11□□□□□ -0.95
LDLR-210ENST00000559340 INAVAQ3KP66 663 aa9.11□□□□□ -0.95
LDLR-210ENST00000559340 BCL7AQ4VC05 210 aa9.11□□□□□ -0.95
LDLR-210ENST00000559340 PYCR3Q53H96 274 aa9.11□□□□□ -0.95
LDLR-210ENST00000559340 GRTP1Q5TC63 336 aa9.11□□□□□ -0.95
LDLR-210ENST00000559340 DGLUCYQ7Z3D6 616 aa9.11□□□□□ -0.95
LDLR-210ENST00000559340 TRIM74Q86UV6 250 aa9.11□□□□□ -0.95
LDLR-210ENST00000559340 GKN2Q86XP6 184 aa9.11□□□□□ -0.95
LDLR-210ENST00000559340 SPATS2Q86XZ4 545 aaKnown RBP9.11□□□□□ -0.95
LDLR-210ENST00000559340 TRAPPC5Q8IUR0 188 aa9.11□□□□□ -0.95
LDLR-210ENST00000559340 PIANPQ8IYJ0 282 aa9.11□□□□□ -0.95
LDLR-210ENST00000559340 BEND7Q8N7W2 519 aaPredicted RBP9.11□□□□□ -0.95
LDLR-210ENST00000559340 UBLCP1Q8WVY7 318 aaPredicted RBP9.11□□□□□ -0.95
LDLR-210ENST00000559340 CAVIN3Q969G5 261 aa9.11□□□□□ -0.95
LDLR-210ENST00000559340 TSACCQ96A04 125 aaPredicted RBP9.11□□□□□ -0.95
LDLR-210ENST00000559340 OR2M4Q96R27 311 aa9.11□□□□□ -0.95
LDLR-210ENST00000559340 TRIM56Q9BRZ2 755 aaKnown RBP9.11□□□□□ -0.95
LDLR-210ENST00000559340 TIMM29Q9BSF4 260 aa9.11□□□□□ -0.95
LDLR-210ENST00000559340 CCM2Q9BSQ5 444 aa9.11□□□□□ -0.95
LDLR-210ENST00000559340 ACSS3Q9H6R3 686 aa9.11□□□□□ -0.95
LDLR-210ENST00000559340 GAREM1Q9H706 876 aa9.11□□□□□ -0.95
LDLR-210ENST00000559340 EVA1BQ9NVM1 165 aa9.11□□□□□ -0.95
LDLR-210ENST00000559340 TMPRSS11EQ9UL52 423 aa9.11□□□□□ -0.95
LDLR-210ENST00000559340 SUFUQ9UMX1 484 aa9.11□□□□□ -0.95
LDLR-210ENST00000559340 SNX11Q9Y5W9 270 aa9.11□□□□□ -0.95
LDLR-210ENST00000559340 OAS3Q9Y6K5 1087 aaKnown RBP9.11□□□□□ -0.95
LDLR-210ENST00000559340 CSNK1G3Q9Y6M4 447 aa9.11□□□□□ -0.95
LDLR-210ENST00000559340 GPR179Q6PRD1 2367 aa9.1□□□□□ -0.95
LDLR-210ENST00000559340 A0A1B0GTQ1 180 aa9.1□□□□□ -0.95
LDLR-210ENST00000559340 CCDC151A5D8V7 595 aa9.1□□□□□ -0.95
LDLR-210ENST00000559340 MGAT4DA6NG13 374 aa9.1□□□□□ -0.95
LDLR-210ENST00000559340 E5RI56 91 aa9.1□□□□□ -0.95
LDLR-210ENST00000559340 CTIFO43310 598 aaKnown RBP9.1□□□□□ -0.95
LDLR-210ENST00000559340 RIPK2O43353 540 aa9.1□□□□□ -0.95
LDLR-210ENST00000559340 DNAJC6O75061 913 aa9.1□□□□□ -0.95
LDLR-210ENST00000559340 ANXA6P08133 673 aa9.1□□□□□ -0.95
LDLR-210ENST00000559340 INHBAP08476 426 aa9.1□□□□□ -0.95
LDLR-210ENST00000559340 FAM153BP0C7A2 387 aa9.1□□□□□ -0.95
LDLR-210ENST00000559340 ALPPL2P10696 532 aa9.1□□□□□ -0.95
LDLR-210ENST00000559340 SLC2A4P14672 509 aa9.1□□□□□ -0.95
LDLR-210ENST00000559340 ENGP17813 658 aa9.1□□□□□ -0.95
LDLR-210ENST00000559340 SDHBP21912 280 aa9.1□□□□□ -0.95
LDLR-210ENST00000559340 FMO4P31512 558 aa9.1□□□□□ -0.95
LDLR-210ENST00000559340 SPRP35270 261 aaPredicted RBP9.1□□□□□ -0.95
LDLR-210ENST00000559340 GP5P40197 560 aa9.1□□□□□ -0.95
LDLR-210ENST00000559340 SKIV2L2P42285 1042 aaKnown RBP9.1□□□□□ -0.95
LDLR-210ENST00000559340 SLC1A2P43004 574 aa9.1□□□□□ -0.95
LDLR-210ENST00000559340 MSH2P43246 934 aa9.1□□□□□ -0.95
LDLR-210ENST00000559340 POLD2P49005 469 aa9.1□□□□□ -0.95
LDLR-210ENST00000559340 PRLHRP49683 370 aa9.1□□□□□ -0.95
LDLR-210ENST00000559340 SERPINB9P50453 376 aa9.1□□□□□ -0.95
LDLR-210ENST00000559340 CLCNKAP51800 687 aa9.1□□□□□ -0.95
LDLR-210ENST00000559340 SLC12A2P55011 1212 aa9.1□□□□□ -0.95
LDLR-210ENST00000559340 EIF3BP55884 814 aaKnown RBP9.1□□□□□ -0.95
LDLR-210ENST00000559340 SPEM2Q0P670 501 aa9.1□□□□□ -0.95
LDLR-210ENST00000559340 TMED2Q15363 201 aa9.1□□□□□ -0.95
LDLR-210ENST00000559340 INSCQ1MX18 579 aa9.1□□□□□ -0.95
LDLR-210ENST00000559340 ALG11Q2TAA5 492 aa9.1□□□□□ -0.95
LDLR-210ENST00000559340 FAM153CQ494X1 144 aa9.1□□□□□ -0.95
LDLR-210ENST00000559340 TRMT10BQ6PF06 316 aaKnown RBP9.1□□□□□ -0.95
LDLR-210ENST00000559340 LVRNQ6Q4G3 990 aa9.1□□□□□ -0.95
LDLR-210ENST00000559340 MARK2Q7KZI7 788 aaKnown RBP9.1□□□□□ -0.95
LDLR-210ENST00000559340 STRA8Q7Z7C7 330 aa9.1□□□□□ -0.95
LDLR-210ENST00000559340 CROCCP2Q86T23 111 aa9.1□□□□□ -0.95
LDLR-210ENST00000559340 AMZ2Q86W34 360 aa9.1□□□□□ -0.95
LDLR-210ENST00000559340 KIAA2013Q8IYS2 634 aa9.1□□□□□ -0.95
LDLR-210ENST00000559340 SLC22A18ASQ8N1D0 253 aa9.1□□□□□ -0.95
LDLR-210ENST00000559340 PPM1NQ8N819 430 aa9.1□□□□□ -0.95
LDLR-210ENST00000559340 RASGEF1AQ8N9B8 481 aa9.1□□□□□ -0.95
LDLR-210ENST00000559340 AENQ8WTP8 325 aaKnown RBP9.1□□□□□ -0.95
LDLR-210ENST00000559340 OR1E3Q8WZA6 343 aa9.1□□□□□ -0.95
LDLR-210ENST00000559340 GLMNQ92990 594 aa9.1□□□□□ -0.95
LDLR-210ENST00000559340 SGF29Q96ES7 293 aa9.1□□□□□ -0.95
LDLR-210ENST00000559340 VPS39Q96JC1 886 aa9.1□□□□□ -0.95
LDLR-210ENST00000559340 LINC00615Q96LM1 132 aaPredicted RBP9.1□□□□□ -0.95
LDLR-210ENST00000559340 WDR83Q9BRX9 315 aaKnown RBP9.1□□□□□ -0.95
LDLR-210ENST00000559340 DUSP23Q9BVJ7 150 aa9.1□□□□□ -0.95
LDLR-210ENST00000559340 GTPBP2Q9BX10 602 aaKnown RBP9.1□□□□□ -0.95
LDLR-210ENST00000559340 TXLNGYQ9BZA5 131 aa9.1□□□□□ -0.95
LDLR-210ENST00000559340 FGF22Q9HCT0 170 aa9.1□□□□□ -0.95
LDLR-210ENST00000559340 ARFGAP3Q9NP61 516 aa9.1□□□□□ -0.95
LDLR-210ENST00000559340 SEMA4GQ9NTN9 838 aa9.1□□□□□ -0.95
LDLR-210ENST00000559340 MARCH4Q9P2E8 410 aaPredicted RBP9.1□□□□□ -0.95
LDLR-210ENST00000559340 FETUBQ9UGM5 382 aa9.1□□□□□ -0.95
LDLR-210ENST00000559340 APOBEC3BQ9UH17 382 aaKnown RBP9.1□□□□□ -0.95
LDLR-210ENST00000559340 RABGEF1Q9UJ41 708 aa9.1□□□□□ -0.95
LDLR-210ENST00000559340 ACSL5Q9ULC5 683 aa9.1□□□□□ -0.95
LDLR-210ENST00000559340 PCDHGB2Q9Y5G2 931 aa9.1□□□□□ -0.95
LDLR-210ENST00000559340 SLCO1B1Q9Y6L6 691 aa9.1□□□□□ -0.95
LDLR-210ENST00000559340 UNC13CQ8NB66 2214 aa9.1□□□□□ -0.95
LDLR-210ENST00000559340 CFAP54Q96N23 3096 aa9.1□□□□□ -0.95
LDLR-210ENST00000559340 EXOC1LA0A1B0GW35 172 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 OR2AG2A6NM03 316 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 OR5K4A6NMS3 321 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms