RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 ERVPABLB-1P60509 514 aa10.5□□□□□ -0.73
CUX1-217ENST00000558836 AP1S1P61966 158 aa10.5□□□□□ -0.73
CUX1-217ENST00000558836 LETMD1Q6P1Q0 360 aa10.5□□□□□ -0.73
CUX1-217ENST00000558836 ZNF783Q6ZMS7 281 aa10.5□□□□□ -0.73
CUX1-217ENST00000558836 DET1Q7L5Y6 550 aa10.5□□□□□ -0.73
CUX1-217ENST00000558836 CMTR2Q8IYT2 770 aaKnown RBP10.5□□□□□ -0.73
CUX1-217ENST00000558836 SLC25A23Q9BV35 468 aa10.5□□□□□ -0.73
CUX1-217ENST00000558836 MTG2Q9H4K7 406 aa10.5□□□□□ -0.73
CUX1-217ENST00000558836 PIF1Q9H611 641 aa10.5□□□□□ -0.73
CUX1-217ENST00000558836 ZDHHC6Q9H6R6 413 aa10.5□□□□□ -0.73
CUX1-217ENST00000558836 HACD3Q9P035 362 aa10.5□□□□□ -0.73
CUX1-217ENST00000558836 SLAMF8Q9P0V8 285 aa10.5□□□□□ -0.73
CUX1-217ENST00000558836 FAM8A1Q9UBU6 413 aa10.5□□□□□ -0.73
CUX1-217ENST00000558836 PCDHGB4Q9UN71 923 aa10.5□□□□□ -0.73
CUX1-217ENST00000558836 PSMD13Q9UNM6 376 aa10.5□□□□□ -0.73
CUX1-217ENST00000558836 PCDHGB5Q9Y5G0 923 aa10.5□□□□□ -0.73
CUX1-217ENST00000558836 TRAV19A0A0A6YYK7 116 aa10.49□□□□□ -0.73
CUX1-217ENST00000558836 H7C0S8 307 aa10.49□□□□□ -0.73
CUX1-217ENST00000558836 MTX2O75431 263 aa10.49□□□□□ -0.73
CUX1-217ENST00000558836 RNASEH2AO75792 299 aaKnown RBP10.49□□□□□ -0.73
CUX1-217ENST00000558836 BCAS2O75934 225 aaPredicted RBP10.49□□□□□ -0.73
CUX1-217ENST00000558836 CTSAP10619 480 aa10.49□□□□□ -0.73
CUX1-217ENST00000558836 HTR6P50406 440 aa10.49□□□□□ -0.73
CUX1-217ENST00000558836 UFM1P61960 85 aa10.49□□□□□ -0.73
CUX1-217ENST00000558836 PHKG1Q16816 387 aa10.49□□□□□ -0.73
CUX1-217ENST00000558836 MPPE1Q53F39 396 aa10.49□□□□□ -0.73
CUX1-217ENST00000558836 AARS2Q5JTZ9 985 aaKnown RBP10.49□□□□□ -0.73
CUX1-217ENST00000558836 CAPRIN2Q6IMN6 1127 aaKnown RBP10.49□□□□□ -0.73
CUX1-217ENST00000558836 IRGCQ6NXR0 463 aa10.49□□□□□ -0.73
CUX1-217ENST00000558836 HTR3DQ70Z44 454 aa10.49□□□□□ -0.73
CUX1-217ENST00000558836 IFNEQ86WN2 208 aa10.49□□□□□ -0.73
CUX1-217ENST00000558836 MIER2Q8N344 545 aa10.49□□□□□ -0.73
CUX1-217ENST00000558836 CHST14Q8NCH0 376 aa10.49□□□□□ -0.73
CUX1-217ENST00000558836 DLG3Q92796 817 aa10.49□□□□□ -0.73
CUX1-217ENST00000558836 ERLEC1Q96DZ1 483 aa10.49□□□□□ -0.73
CUX1-217ENST00000558836 LRGUKQ96M69 825 aa10.49□□□□□ -0.73
CUX1-217ENST00000558836 TUBGCP5Q96RT8 1024 aa10.49□□□□□ -0.73
CUX1-217ENST00000558836 CRISPLD2Q9H0B8 497 aa10.49□□□□□ -0.73
CUX1-217ENST00000558836 SPAG4Q9NPE6 437 aa10.49□□□□□ -0.73
CUX1-217ENST00000558836 KIAA1522Q9P206 1035 aaPredicted RBP10.49□□□□□ -0.73
CUX1-217ENST00000558836 CROTQ9UKG9 612 aa10.49□□□□□ -0.73
CUX1-217ENST00000558836 VPS9D1Q9Y2B5 631 aa10.49□□□□□ -0.73
CUX1-217ENST00000558836 TRANK1O15050 2925 aa10.49□□□□□ -0.73
CUX1-217ENST00000558836 GLYATL1P3A0A0U1RQE8 302 aa10.49□□□□□ -0.73
CUX1-217ENST00000558836 TRIM38O00635 465 aa10.49□□□□□ -0.73
CUX1-217ENST00000558836 GIPC1O14908 333 aa10.49□□□□□ -0.73
CUX1-217ENST00000558836 LBPP18428 481 aa10.49□□□□□ -0.73
CUX1-217ENST00000558836 CLCN4P51793 760 aa10.49□□□□□ -0.73
CUX1-217ENST00000558836 TRIM25Q14258 630 aaKnown RBP10.49□□□□□ -0.73
CUX1-217ENST00000558836 TEAD2Q15562 447 aa10.49□□□□□ -0.73
CUX1-217ENST00000558836 FUT11Q495W5 492 aa10.49□□□□□ -0.73
CUX1-217ENST00000558836 RNF220Q5VTB9 566 aa10.49□□□□□ -0.73
CUX1-217ENST00000558836 LRRC66Q68CR7 880 aa10.49□□□□□ -0.73
CUX1-217ENST00000558836 SBSNQ6UWP8 590 aa10.49□□□□□ -0.73
CUX1-217ENST00000558836 DPY19L3Q6ZPD9 716 aa10.49□□□□□ -0.73
CUX1-217ENST00000558836 Q6ZVU0 165 aa10.49□□□□□ -0.73
CUX1-217ENST00000558836 ZNF366Q8N895 744 aa10.49□□□□□ -0.73
CUX1-217ENST00000558836 OR2AP1Q8NGE2 309 aa10.49□□□□□ -0.73
CUX1-217ENST00000558836 DNAJB14Q8TBM8 379 aa10.49□□□□□ -0.73
CUX1-217ENST00000558836 ACDQ96AP0 544 aa10.49□□□□□ -0.73
CUX1-217ENST00000558836 VOPP1Q96AW1 172 aa10.49□□□□□ -0.73
CUX1-217ENST00000558836 ASIC4Q96FT7 647 aa10.49□□□□□ -0.73
CUX1-217ENST00000558836 ATP13A3Q9H7F0 1226 aa10.49□□□□□ -0.73
CUX1-217ENST00000558836 ASAH2Q9NR71 780 aa10.49□□□□□ -0.73
CUX1-217ENST00000558836 LATS2Q9NRM7 1088 aa10.49□□□□□ -0.73
CUX1-217ENST00000558836 DHRS7Q9Y394 339 aa10.49□□□□□ -0.73
CUX1-217ENST00000558836 FFAR3O14843 346 aa10.48□□□□□ -0.73
CUX1-217ENST00000558836 GPR42O15529 346 aa10.48□□□□□ -0.73
CUX1-217ENST00000558836 ESRRBO95718 433 aa10.48□□□□□ -0.73
CUX1-217ENST00000558836 CAPN1P07384 714 aa10.48□□□□□ -0.73
CUX1-217ENST00000558836 LINGO3P0C6S8 592 aa10.48□□□□□ -0.73
CUX1-217ENST00000558836 ZNF7P17097 686 aaPredicted RBP10.48□□□□□ -0.73
CUX1-217ENST00000558836 CDKN3Q16667 212 aa10.48□□□□□ -0.73
CUX1-217ENST00000558836 CRTC1Q6UUV9 634 aa10.48□□□□□ -0.73
CUX1-217ENST00000558836 GPRIN3Q6ZVF9 776 aa10.48□□□□□ -0.73
CUX1-217ENST00000558836 ADGRG6Q86SQ4 1221 aa10.48□□□□□ -0.73
CUX1-217ENST00000558836 FIBINQ8TAL6 211 aa10.48□□□□□ -0.73
CUX1-217ENST00000558836 METTL6Q8TCB7 284 aa10.48□□□□□ -0.73
CUX1-217ENST00000558836 GATA6Q92908 595 aa10.48□□□□□ -0.73
CUX1-217ENST00000558836 EGFL8Q99944 293 aa10.48□□□□□ -0.73
CUX1-217ENST00000558836 SAGE1Q9NXZ1 904 aa10.48□□□□□ -0.73
CUX1-217ENST00000558836 ANGPT2O15123 496 aa10.48□□□□□ -0.73
CUX1-217ENST00000558836 FFAR2O15552 330 aa10.48□□□□□ -0.73
CUX1-217ENST00000558836 HTRA2O43464 458 aaPredicted RBP10.48□□□□□ -0.73
CUX1-217ENST00000558836 IGSF6O95976 241 aa10.48□□□□□ -0.73
CUX1-217ENST00000558836 LINC00271P0C7V0 271 aa10.48□□□□□ -0.73
CUX1-217ENST00000558836 LHCGRP22888 699 aa10.48□□□□□ -0.73
CUX1-217ENST00000558836 PSMA3P25788 255 aa10.48□□□□□ -0.73
CUX1-217ENST00000558836 SLC7A9P82251 487 aa10.48□□□□□ -0.73
CUX1-217ENST00000558836 GK3PQ14409 553 aa10.48□□□□□ -0.73
CUX1-217ENST00000558836 MAPRE2Q15555 327 aa10.48□□□□□ -0.73
CUX1-217ENST00000558836 SLC5A9Q2M3M2 681 aa10.48□□□□□ -0.73
CUX1-217ENST00000558836 SLC44A4Q53GD3 710 aa10.48□□□□□ -0.73
CUX1-217ENST00000558836 SGO1Q5FBB7 561 aa10.48□□□□□ -0.73
CUX1-217ENST00000558836 FBXL19Q6PCT2 694 aa10.48□□□□□ -0.73
CUX1-217ENST00000558836 LILRA6Q6PI73 481 aa10.48□□□□□ -0.73
CUX1-217ENST00000558836 IL27RAQ6UWB1 636 aa10.48□□□□□ -0.73
CUX1-217ENST00000558836 SNX20Q7Z614 316 aa10.48□□□□□ -0.73
CUX1-217ENST00000558836 FNDC5Q8NAU1 212 aa10.48□□□□□ -0.73
CUX1-217ENST00000558836 ZNF784Q8NCA9 323 aaPredicted RBP10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms