RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 FGF3P11487 239 aaPredicted RBP12.42□□□□□ -0.42
SHMT2-230ENST00000557427 ATP5DP30049 168 aa12.42□□□□□ -0.42
SHMT2-230ENST00000557427 IGFALSP35858 605 aa12.42□□□□□ -0.42
SHMT2-230ENST00000557427 NR2C2P49116 596 aa12.42□□□□□ -0.42
SHMT2-230ENST00000557427 MAGOHP61326 146 aaKnown RBP12.42□□□□□ -0.42
SHMT2-230ENST00000557427 SLC10A7Q0GE19 358 aa12.42□□□□□ -0.42
SHMT2-230ENST00000557427 LBRQ14739 615 aaKnown RBP12.42□□□□□ -0.42
SHMT2-230ENST00000557427 KYNUQ16719 465 aa12.42□□□□□ -0.42
SHMT2-230ENST00000557427 PHF19Q5T6S3 580 aa12.42□□□□□ -0.42
SHMT2-230ENST00000557427 NPNTQ6UXI9 565 aa12.42□□□□□ -0.42
SHMT2-230ENST00000557427 MAMDC2Q7Z304 686 aaPredicted RBP12.42□□□□□ -0.42
SHMT2-230ENST00000557427 SPRED1Q7Z699 444 aa12.42□□□□□ -0.42
SHMT2-230ENST00000557427 CDKL3Q8IVW4 592 aaPredicted RBP12.42□□□□□ -0.42
SHMT2-230ENST00000557427 RIBC1Q8N443 379 aaPredicted RBP12.42□□□□□ -0.42
SHMT2-230ENST00000557427 NAT8LQ8N9F0 302 aa12.42□□□□□ -0.42
SHMT2-230ENST00000557427 GALNT11Q8NCW6 608 aa12.42□□□□□ -0.42
SHMT2-230ENST00000557427 GPR156Q8NFN8 814 aa12.42□□□□□ -0.42
SHMT2-230ENST00000557427 GPBAR1Q8TDU6 330 aa12.42□□□□□ -0.42
SHMT2-230ENST00000557427 EPS8L3Q8TE67 593 aaKnown RBP12.42□□□□□ -0.42
SHMT2-230ENST00000557427 CXorf40AQ8TE69 158 aa12.42□□□□□ -0.42
SHMT2-230ENST00000557427 CPT1BQ92523 772 aa12.42□□□□□ -0.42
SHMT2-230ENST00000557427 CCDC77Q9BR77 488 aa12.42□□□□□ -0.42
SHMT2-230ENST00000557427 SAYSD1Q9NPB0 183 aa12.42□□□□□ -0.42
SHMT2-230ENST00000557427 CUEDC1Q9NWM3 386 aaPredicted RBP12.42□□□□□ -0.42
SHMT2-230ENST00000557427 DKK3Q9UBP4 350 aa12.42□□□□□ -0.42
SHMT2-230ENST00000557427 APPL1Q9UKG1 709 aa12.42□□□□□ -0.42
SHMT2-230ENST00000557427 VPS4AQ9UN37 437 aa12.42□□□□□ -0.42
SHMT2-230ENST00000557427 GPR34Q9UPC5 381 aa12.42□□□□□ -0.42
SHMT2-230ENST00000557427 F8P00451 2351 aa12.42□□□□□ -0.42
SHMT2-230ENST00000557427 A0A087WUV0 522 aaPredicted RBP12.41□□□□□ -0.42
SHMT2-230ENST00000557427 TLDC2A0PJX2 215 aa12.41□□□□□ -0.42
SHMT2-230ENST00000557427 ERICH4A6NGS2 130 aa12.41□□□□□ -0.42
SHMT2-230ENST00000557427 A8MX80 341 aa12.41□□□□□ -0.42
SHMT2-230ENST00000557427 E7ESA3 106 aa12.41□□□□□ -0.42
SHMT2-230ENST00000557427 H7C0C1 242 aa12.41□□□□□ -0.42
SHMT2-230ENST00000557427 TM7SF2O76062 418 aa12.41□□□□□ -0.42
SHMT2-230ENST00000557427 GRNP28799 593 aaKnown RBP12.41□□□□□ -0.42
SHMT2-230ENST00000557427 HPDP32754 393 aaPredicted RBP12.41□□□□□ -0.42
SHMT2-230ENST00000557427 ATP5OP48047 213 aa12.41□□□□□ -0.42
SHMT2-230ENST00000557427 CSNK1DP48730 415 aa12.41□□□□□ -0.42
SHMT2-230ENST00000557427 RENBPP51606 427 aa12.41□□□□□ -0.42
SHMT2-230ENST00000557427 THOP1P52888 689 aa12.41□□□□□ -0.42
SHMT2-230ENST00000557427 ARL4CP56559 192 aa12.41□□□□□ -0.42
SHMT2-230ENST00000557427 PPARDQ03181 441 aa12.41□□□□□ -0.42
SHMT2-230ENST00000557427 BCL2L1Q07817 233 aa12.41□□□□□ -0.42
SHMT2-230ENST00000557427 NSUN2Q08J23 767 aaKnown RBP eCLIP12.41□□□□□ -0.42
SHMT2-230ENST00000557427 CDC20Q12834 499 aa12.41□□□□□ -0.42
SHMT2-230ENST00000557427 PTK2BQ14289 1009 aa12.41□□□□□ -0.42
SHMT2-230ENST00000557427 RFTN1Q14699 578 aaPredicted RBP12.41□□□□□ -0.42
SHMT2-230ENST00000557427 UGP2Q16851 508 aa12.41□□□□□ -0.42
SHMT2-230ENST00000557427 ATP1A1-AS1Q5TC04 95 aa12.41□□□□□ -0.42
SHMT2-230ENST00000557427 TMEM164Q5U3C3 297 aa12.41□□□□□ -0.42
SHMT2-230ENST00000557427 LVRNQ6Q4G3 990 aa12.41□□□□□ -0.42
SHMT2-230ENST00000557427 PPP1R21Q6ZMI0 780 aa12.41□□□□□ -0.42
SHMT2-230ENST00000557427 FAM71DQ8N9W8 422 aa12.41□□□□□ -0.42
SHMT2-230ENST00000557427 RCBTB1Q8NDN9 531 aa12.41□□□□□ -0.42
SHMT2-230ENST00000557427 UHMK1Q8TAS1 419 aaKnown RBP12.41□□□□□ -0.42
SHMT2-230ENST00000557427 APOBEC4Q8WW27 367 aaKnown RBP12.41□□□□□ -0.42
SHMT2-230ENST00000557427 ASB12Q8WXK4 309 aa12.41□□□□□ -0.42
SHMT2-230ENST00000557427 SLC45A3Q96JT2 553 aa12.41□□□□□ -0.42
SHMT2-230ENST00000557427 NSMCE3Q96MG7 304 aa12.41□□□□□ -0.42
SHMT2-230ENST00000557427 PWWP2AQ96N64 755 aa12.41□□□□□ -0.42
SHMT2-230ENST00000557427 ZNF641Q96N77 438 aaPredicted RBP12.41□□□□□ -0.42
SHMT2-230ENST00000557427 FRMD8Q9BZ67 464 aaPredicted RBP12.41□□□□□ -0.42
SHMT2-230ENST00000557427 ATP13A3Q9H7F0 1226 aa12.41□□□□□ -0.42
SHMT2-230ENST00000557427 PPCSQ9HAB8 311 aa12.41□□□□□ -0.42
SHMT2-230ENST00000557427 PCDH12Q9NPG4 1184 aa12.41□□□□□ -0.42
SHMT2-230ENST00000557427 MBNL1Q9NR56 388 aaKnown RBP12.41□□□□□ -0.42
SHMT2-230ENST00000557427 PAK5Q9P286 719 aa12.41□□□□□ -0.42
SHMT2-230ENST00000557427 LGALS13Q9UHV8 139 aa12.41□□□□□ -0.42
SHMT2-230ENST00000557427 DOLKQ9UPQ8 538 aa12.41□□□□□ -0.42
SHMT2-230ENST00000557427 COQ6Q9Y2Z9 468 aa12.41□□□□□ -0.42
SHMT2-230ENST00000557427 PCDHGA3Q9Y5H0 932 aa12.41□□□□□ -0.42
SHMT2-230ENST00000557427 B3GALT1Q9Y5Z6 326 aa12.41□□□□□ -0.42
SHMT2-230ENST00000557427 ESPL1Q14674 2120 aa12.4□□□□□ -0.42
SHMT2-230ENST00000557427 HACD1B0YJ81 288 aa12.4□□□□□ -0.42
SHMT2-230ENST00000557427 MAFKO60675 156 aa12.4□□□□□ -0.42
SHMT2-230ENST00000557427 ZNF189O75820 626 aaPredicted RBP12.4□□□□□ -0.42
SHMT2-230ENST00000557427 MAP3K6O95382 1288 aa12.4□□□□□ -0.42
SHMT2-230ENST00000557427 SERPINA4P29622 427 aa12.4□□□□□ -0.42
SHMT2-230ENST00000557427 LSP1P33241 339 aa12.4□□□□□ -0.42
SHMT2-230ENST00000557427 MMP13P45452 471 aa12.4□□□□□ -0.42
SHMT2-230ENST00000557427 HK3P52790 923 aa12.4□□□□□ -0.42
SHMT2-230ENST00000557427 ITKQ08881 620 aa12.4□□□□□ -0.42
SHMT2-230ENST00000557427 ZNF235Q14590 738 aa12.4□□□□□ -0.42
SHMT2-230ENST00000557427 GRM3Q14832 879 aa12.4□□□□□ -0.42
SHMT2-230ENST00000557427 HIF1AQ16665 826 aa12.4□□□□□ -0.42
SHMT2-230ENST00000557427 ZSCAN26Q16670 478 aa12.4□□□□□ -0.42
SHMT2-230ENST00000557427 ALG11Q2TAA5 492 aa12.4□□□□□ -0.42
SHMT2-230ENST00000557427 DEFB109BQ30KR1 87 aa12.4□□□□□ -0.42
SHMT2-230ENST00000557427 TMEM52BQ4KMG9 183 aa12.4□□□□□ -0.42
SHMT2-230ENST00000557427 TMCO4Q5TGY1 634 aa12.4□□□□□ -0.42
SHMT2-230ENST00000557427 ERAP2Q6P179 960 aa12.4□□□□□ -0.42
SHMT2-230ENST00000557427 MACC1Q6ZN28 852 aa12.4□□□□□ -0.42
SHMT2-230ENST00000557427 BZW1Q7L1Q6 419 aaKnown RBP12.4□□□□□ -0.42
SHMT2-230ENST00000557427 TAOK1Q7L7X3 1001 aa12.4□□□□□ -0.42
SHMT2-230ENST00000557427 ZC3H18Q86VM9 953 aaKnown RBP12.4□□□□□ -0.42
SHMT2-230ENST00000557427 ZSWIM9Q86XI8 627 aa12.4□□□□□ -0.42
SHMT2-230ENST00000557427 CACNA2D3Q8IZS8 1091 aa12.4□□□□□ -0.42
SHMT2-230ENST00000557427 FSTL5Q8N475 847 aaPredicted RBP12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms