RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 FAM45AQ8TCE6 357 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 PPP1R36Q96LQ0 422 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 ZSWIM3Q96MP5 696 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 CAMKK2Q96RR4 588 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 FTHL17Q9BXU8 183 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 FRMD8P1Q9BZ68 369 aaPredicted RBP13.68□□□□□ -0.22
SHMT2-226ENST00000556825 MMP28Q9H239 520 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 POPDC2Q9HBU9 364 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 POLE3Q9NRF9 147 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 FRMPD2Q68DX3 1309 aaPredicted RBP13.68□□□□□ -0.22
SHMT2-226ENST00000556825 RPS10-NUDT3A0A1W2PQS6 291 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 PMS2P1A4D2B8 440 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 NT5C1B-RDH14C9J2C7 533 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 SLC1A7O00341 560 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 GRID2O43424 1007 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 RGS20O76081 388 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 SRP72O76094 671 aaKnown RBP13.68□□□□□ -0.22
SHMT2-226ENST00000556825 TSPAN12O95859 305 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 THRBP10828 461 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 SLC2A4P14672 509 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 DARSP14868 501 aaKnown RBP13.68□□□□□ -0.22
SHMT2-226ENST00000556825 ITGB6P18564 788 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 MYL9P24844 172 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 ARFIP1P53367 373 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 CTU2Q2VPK5 515 aaKnown RBP13.68□□□□□ -0.22
SHMT2-226ENST00000556825 SULT1C3Q6IMI6 304 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 LAIR2Q6ISS4 152 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 C5orf46Q6UWT4 87 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 ZYG11AQ6WRX3 759 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 NAPRTQ6XQN6 538 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 HACD2Q6Y1H2 254 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 CCDC190Q86UF4 302 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 CAMKK1Q8N5S9 505 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 AGR3Q8TD06 166 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 SHC3Q92529 594 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 AP2M1Q96CW1 435 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 AURKBQ96GD4 344 aaPredicted RBP13.68□□□□□ -0.22
SHMT2-226ENST00000556825 FAM167AQ96KS9 214 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 SLC9A7Q96T83 725 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 LYVE1Q9Y5Y7 322 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 U3KQV3 271 aa13.68□□□□□ -0.22
SHMT2-226ENST00000556825 MAGEB6P1A0A0J9YX57 407 aa13.67□□□□□ -0.22
SHMT2-226ENST00000556825 STX16O14662 325 aa13.67□□□□□ -0.22
SHMT2-226ENST00000556825 EIF3DO15371 548 aaKnown RBP eCLIP13.67□□□□□ -0.22
SHMT2-226ENST00000556825 LDLRP01130 860 aa13.67□□□□□ -0.22
SHMT2-226ENST00000556825 UNGP13051 313 aaPredicted RBP13.67□□□□□ -0.22
SHMT2-226ENST00000556825 HPGDP15428 266 aa13.67□□□□□ -0.22
SHMT2-226ENST00000556825 AGXTP21549 392 aa13.67□□□□□ -0.22
SHMT2-226ENST00000556825 BRCC3P46736 316 aa13.67□□□□□ -0.22
SHMT2-226ENST00000556825 RPL14P50914 215 aaKnown RBP13.67□□□□□ -0.22
SHMT2-226ENST00000556825 ALDH3A2P51648 485 aa13.67□□□□□ -0.22
SHMT2-226ENST00000556825 YWHAZP63104 245 aaKnown RBP13.67□□□□□ -0.22
SHMT2-226ENST00000556825 CREMQ03060 361 aa13.67□□□□□ -0.22
SHMT2-226ENST00000556825 RIPPLY1Q0D2K3 151 aa13.67□□□□□ -0.22
SHMT2-226ENST00000556825 ADAM15Q13444 863 aa13.67□□□□□ -0.22
SHMT2-226ENST00000556825 CLCA4Q14CN2 919 aa13.67□□□□□ -0.22
SHMT2-226ENST00000556825 SPATS1Q496A3 300 aa13.67□□□□□ -0.22
SHMT2-226ENST00000556825 RUNDC3AQ59EK9 446 aa13.67□□□□□ -0.22
SHMT2-226ENST00000556825 TFDP3Q5H9I0 405 aa13.67□□□□□ -0.22
SHMT2-226ENST00000556825 ZNF425Q6IV72 752 aa13.67□□□□□ -0.22
SHMT2-226ENST00000556825 LCN8Q6JVE9 175 aa13.67□□□□□ -0.22
SHMT2-226ENST00000556825 SNX20Q7Z614 316 aa13.67□□□□□ -0.22
SHMT2-226ENST00000556825 METTL23Q86XA0 190 aa13.67□□□□□ -0.22
SHMT2-226ENST00000556825 RDH10Q8IZV5 341 aa13.67□□□□□ -0.22
SHMT2-226ENST00000556825 OR5T2Q8NGG2 359 aa13.67□□□□□ -0.22
SHMT2-226ENST00000556825 GOT1L1Q8NHS2 421 aaPredicted RBP13.67□□□□□ -0.22
SHMT2-226ENST00000556825 UBASH3BQ8TF42 649 aa13.67□□□□□ -0.22
SHMT2-226ENST00000556825 GPRASP2Q96D09 838 aa13.67□□□□□ -0.22
SHMT2-226ENST00000556825 REPS1Q96D71 796 aa13.67□□□□□ -0.22
SHMT2-226ENST00000556825 HYLS1Q96M11 299 aa13.67□□□□□ -0.22
SHMT2-226ENST00000556825 KREMEN1Q96MU8 473 aa13.67□□□□□ -0.22
SHMT2-226ENST00000556825 FRMD6Q96NE9 622 aa13.67□□□□□ -0.22
SHMT2-226ENST00000556825 TTLL2Q9BWV7 592 aa13.67□□□□□ -0.22
SHMT2-226ENST00000556825 IKZF4Q9H2S9 585 aa13.67□□□□□ -0.22
SHMT2-226ENST00000556825 ELOVL6Q9H5J4 265 aa13.67□□□□□ -0.22
SHMT2-226ENST00000556825 SETD4Q9NVD3 440 aa13.67□□□□□ -0.22
SHMT2-226ENST00000556825 VTI1BQ9UEU0 232 aa13.67□□□□□ -0.22
SHMT2-226ENST00000556825 RAP2CQ9Y3L5 183 aa13.67□□□□□ -0.22
SHMT2-226ENST00000556825 A0A1B0GWJ7 208 aa13.67□□□□□ -0.22
SHMT2-226ENST00000556825 H2AFYO75367 372 aaKnown RBP13.67□□□□□ -0.22
SHMT2-226ENST00000556825 CLN5O75503 358 aa13.67□□□□□ -0.22
SHMT2-226ENST00000556825 RFPL3O75679 317 aa13.67□□□□□ -0.22
SHMT2-226ENST00000556825 CYP7A1P22680 504 aa13.67□□□□□ -0.22
SHMT2-226ENST00000556825 OXTRP30559 389 aa13.67□□□□□ -0.22
SHMT2-226ENST00000556825 BMP8BP34820 402 aa13.67□□□□□ -0.22
SHMT2-226ENST00000556825 NSFP46459 744 aaKnown RBP13.67□□□□□ -0.22
SHMT2-226ENST00000556825 RAB13P51153 203 aa13.67□□□□□ -0.22
SHMT2-226ENST00000556825 RAB14P61106 215 aa13.67□□□□□ -0.22
SHMT2-226ENST00000556825 PSMC5P62195 406 aa13.67□□□□□ -0.22
SHMT2-226ENST00000556825 EEF1A1P68104 462 aaKnown RBP13.67□□□□□ -0.22
SHMT2-226ENST00000556825 EEF1A2Q05639 463 aaKnown RBP13.67□□□□□ -0.22
SHMT2-226ENST00000556825 CD47Q08722 323 aa13.67□□□□□ -0.22
SHMT2-226ENST00000556825 LRRC74AQ0VAA2 488 aa13.67□□□□□ -0.22
SHMT2-226ENST00000556825 HES5Q5TA89 166 aa13.67□□□□□ -0.22
SHMT2-226ENST00000556825 EEF1A1P5Q5VTE0 462 aa13.67□□□□□ -0.22
SHMT2-226ENST00000556825 GPR139Q6DWJ6 353 aa13.67□□□□□ -0.22
SHMT2-226ENST00000556825 OR7E24Q6IFN5 339 aa13.67□□□□□ -0.22
SHMT2-226ENST00000556825 PADI6Q6TGC4 694 aa13.67□□□□□ -0.22
SHMT2-226ENST00000556825 BMP8AQ7Z5Y6 402 aa13.67□□□□□ -0.22
SHMT2-226ENST00000556825 TMC8Q8IU68 726 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms