RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	DCDC1	P59894	354 aa		12.42	□□□□□ -0.42
SHMT2-223	ENST00000556689	RPS18	P62269	152 aa	Known RBP	12.42	□□□□□ -0.42
SHMT2-223	ENST00000556689	CHAF1B	Q13112	559 aa		12.42	□□□□□ -0.42
SHMT2-223	ENST00000556689	KCNAB1	Q14722	419 aa		12.42	□□□□□ -0.42
SHMT2-223	ENST00000556689	CHRNA6	Q15825	494 aa		12.42	□□□□□ -0.42
SHMT2-223	ENST00000556689	HADH	Q16836	314 aa	Known RBP	12.42	□□□□□ -0.42
SHMT2-223	ENST00000556689	CPZ	Q66K79	652 aa		12.42	□□□□□ -0.42
SHMT2-223	ENST00000556689	NCBP2-AS2	Q69YL0	99 aa		12.42	□□□□□ -0.42
SHMT2-223	ENST00000556689	KLHL35	Q6PF15	583 aa		12.42	□□□□□ -0.42
SHMT2-223	ENST00000556689	TMC3	Q7Z5M5	1100 aa		12.42	□□□□□ -0.42
SHMT2-223	ENST00000556689	ZNF547	Q8IVP9	402 aa		12.42	□□□□□ -0.42
SHMT2-223	ENST00000556689	CCNY	Q8ND76	341 aa		12.42	□□□□□ -0.42
SHMT2-223	ENST00000556689	PRR7	Q8TB68	274 aa		12.42	□□□□□ -0.42
SHMT2-223	ENST00000556689	FAM71B	Q8TC56	605 aa		12.42	□□□□□ -0.42
SHMT2-223	ENST00000556689	LRRN4	Q8WUT4	740 aa		12.42	□□□□□ -0.42
SHMT2-223	ENST00000556689	BTBD6	Q96KE9	485 aa		12.42	□□□□□ -0.42
SHMT2-223	ENST00000556689	NUP85	Q9BW27	656 aa		12.42	□□□□□ -0.42
SHMT2-223	ENST00000556689	MAGEE1	Q9HCI5	957 aa		12.42	□□□□□ -0.42
SHMT2-223	ENST00000556689	SLAMF7	Q9NQ25	335 aa		12.42	□□□□□ -0.42
SHMT2-223	ENST00000556689	FGF21	Q9NSA1	209 aa		12.42	□□□□□ -0.42
SHMT2-223	ENST00000556689	TRIM10	Q9UDY6	481 aa		12.42	□□□□□ -0.42
SHMT2-223	ENST00000556689	SHOC2	Q9UQ13	582 aa		12.42	□□□□□ -0.42
SHMT2-223	ENST00000556689	PCDHGB7	Q9Y5F8	929 aa		12.42	□□□□□ -0.42
SHMT2-223	ENST00000556689	SPTAN1	Q13813	2472 aa	Known RBP	12.42	□□□□□ -0.42
SHMT2-223	ENST00000556689	DPM1	O60762	260 aa		12.41	□□□□□ -0.42
SHMT2-223	ENST00000556689	MTX2	O75431	263 aa		12.41	□□□□□ -0.42
SHMT2-223	ENST00000556689	JCHAIN	P01591	159 aa		12.41	□□□□□ -0.42
SHMT2-223	ENST00000556689	MMP2	P08253	660 aa		12.41	□□□□□ -0.42
SHMT2-223	ENST00000556689	SKIL	P12757	684 aa		12.41	□□□□□ -0.42
SHMT2-223	ENST00000556689	FECH	P22830	423 aa		12.41	□□□□□ -0.42
SHMT2-223	ENST00000556689	HAL	P42357	657 aa		12.41	□□□□□ -0.42
SHMT2-223	ENST00000556689	ARSE	P51690	589 aa		12.41	□□□□□ -0.42
SHMT2-223	ENST00000556689	DPYSL3	Q14195	570 aa		12.41	□□□□□ -0.42
SHMT2-223	ENST00000556689	GALNT3	Q14435	633 aa		12.41	□□□□□ -0.42
SHMT2-223	ENST00000556689	JMJD6	Q6NYC1	403 aa	Predicted RBP	12.41	□□□□□ -0.42
SHMT2-223	ENST00000556689	RBM43	Q6ZSC3	357 aa	Known RBP	12.41	□□□□□ -0.42
SHMT2-223	ENST00000556689	KMT5C	Q86Y97	462 aa		12.41	□□□□□ -0.42
SHMT2-223	ENST00000556689	KCTD6	Q8NC69	237 aa		12.41	□□□□□ -0.42
SHMT2-223	ENST00000556689	ZNF514	Q96K75	400 aa	Predicted RBP	12.41	□□□□□ -0.42
SHMT2-223	ENST00000556689	SLC29A3	Q9BZD2	475 aa		12.41	□□□□□ -0.42
SHMT2-223	ENST00000556689	HSD3B7	Q9H2F3	369 aa		12.41	□□□□□ -0.42
SHMT2-223	ENST00000556689	MAP10	Q9P2G4	905 aa		12.41	□□□□□ -0.42
SHMT2-223	ENST00000556689	ANAPC7	Q9UJX3	599 aa		12.41	□□□□□ -0.42
SHMT2-223	ENST00000556689	G3BP2	Q9UN86	482 aa	Known RBP	12.41	□□□□□ -0.42
SHMT2-223	ENST00000556689	WDR37	Q9Y2I8	494 aa		12.41	□□□□□ -0.42
SHMT2-223	ENST00000556689	MYO1F	O00160	1098 aa		12.4	□□□□□ -0.42
SHMT2-223	ENST00000556689	KCNJ13	O60928	360 aa		12.4	□□□□□ -0.42
SHMT2-223	ENST00000556689	KLK3	P07288	261 aa	Predicted RBP	12.4	□□□□□ -0.42
SHMT2-223	ENST00000556689	EBLN1	P0CF75	366 aa		12.4	□□□□□ -0.42
SHMT2-223	ENST00000556689	PPP1CA	P62136	330 aa		12.4	□□□□□ -0.42
SHMT2-223	ENST00000556689	HSD11B2	P80365	405 aa		12.4	□□□□□ -0.42
SHMT2-223	ENST00000556689	TMEM115	Q12893	351 aa	Predicted RBP	12.4	□□□□□ -0.42
SHMT2-223	ENST00000556689	MRPL49	Q13405	166 aa	Known RBP	12.4	□□□□□ -0.42
SHMT2-223	ENST00000556689	IL10RA	Q13651	578 aa		12.4	□□□□□ -0.42
SHMT2-223	ENST00000556689	LAMB3	Q13751	1172 aa		12.4	□□□□□ -0.42
SHMT2-223	ENST00000556689	PDK2	Q15119	407 aa		12.4	□□□□□ -0.42
SHMT2-223	ENST00000556689	ATP13A4	Q4VNC1	1196 aa		12.4	□□□□□ -0.42
SHMT2-223	ENST00000556689	E4F1	Q66K89	784 aa	Predicted RBP	12.4	□□□□□ -0.42
SHMT2-223	ENST00000556689	ZNF787	Q6DD87	383 aa		12.4	□□□□□ -0.42
SHMT2-223	ENST00000556689	MAMDC2	Q7Z304	686 aa	Predicted RBP	12.4	□□□□□ -0.42
SHMT2-223	ENST00000556689	HPS6	Q86YV9	775 aa		12.4	□□□□□ -0.42
SHMT2-223	ENST00000556689	MAP7D3	Q8IWC1	876 aa		12.4	□□□□□ -0.42
SHMT2-223	ENST00000556689	MR1	Q95460	341 aa		12.4	□□□□□ -0.42
SHMT2-223	ENST00000556689	HDAC11	Q96DB2	347 aa		12.4	□□□□□ -0.42
SHMT2-223	ENST00000556689	MAP3K3	Q99759	626 aa		12.4	□□□□□ -0.42
SHMT2-223	ENST00000556689	GPR63	Q9BZJ6	419 aa		12.4	□□□□□ -0.42
SHMT2-223	ENST00000556689	THAP2	Q9H0W7	228 aa		12.4	□□□□□ -0.42
SHMT2-223	ENST00000556689	RTN4	Q9NQC3	1192 aa	Known RBP	12.4	□□□□□ -0.42
SHMT2-223	ENST00000556689	KCND1	Q9NSA2	647 aa		12.4	□□□□□ -0.42
SHMT2-223	ENST00000556689	NFKBIL1	Q9UBC1	381 aa	Predicted RBP	12.4	□□□□□ -0.42
SHMT2-223	ENST00000556689	SPTBN1	Q01082	2364 aa	Known RBP	12.39	□□□□□ -0.43
SHMT2-223	ENST00000556689	UBA6	A0AVT1	1052 aa	Predicted RBP	12.39	□□□□□ -0.43
SHMT2-223	ENST00000556689	WIPF3	A6NGB9	483 aa		12.39	□□□□□ -0.43
SHMT2-223	ENST00000556689	KCNK1	O00180	336 aa		12.39	□□□□□ -0.43
SHMT2-223	ENST00000556689	ZNF185	O15231	689 aa		12.39	□□□□□ -0.43
SHMT2-223	ENST00000556689	CPNE3	O75131	537 aa	Known RBP	12.39	□□□□□ -0.43
SHMT2-223	ENST00000556689	SCRG1	O75711	98 aa		12.39	□□□□□ -0.43
SHMT2-223	ENST00000556689	CEACAM4	O75871	244 aa		12.39	□□□□□ -0.43
SHMT2-223	ENST00000556689	SLC4A1	P02730	911 aa		12.39	□□□□□ -0.43
SHMT2-223	ENST00000556689	PIRT	P0C851	137 aa		12.39	□□□□□ -0.43
SHMT2-223	ENST00000556689	BPI	P17213	487 aa		12.39	□□□□□ -0.43
SHMT2-223	ENST00000556689	COL8A1	P27658	744 aa		12.39	□□□□□ -0.43
SHMT2-223	ENST00000556689	PTGIR	P43119	386 aa		12.39	□□□□□ -0.43
SHMT2-223	ENST00000556689	TPM4	P67936	248 aa		12.39	□□□□□ -0.43
SHMT2-223	ENST00000556689	GBE1	Q04446	702 aa		12.39	□□□□□ -0.43
SHMT2-223	ENST00000556689	SLC10A2	Q12908	348 aa	Predicted RBP	12.39	□□□□□ -0.43
SHMT2-223	ENST00000556689	GTF2H3	Q13889	308 aa		12.39	□□□□□ -0.43
SHMT2-223	ENST00000556689	KHDC1	Q4VXA5	237 aa	Known RBP	12.39	□□□□□ -0.43
SHMT2-223	ENST00000556689	PRR30	Q53SZ7	412 aa	Predicted RBP	12.39	□□□□□ -0.43
SHMT2-223	ENST00000556689	IZUMO3	Q5VZ72	239 aa		12.39	□□□□□ -0.43
SHMT2-223	ENST00000556689	ZNF517	Q6ZMY9	492 aa	Predicted RBP	12.39	□□□□□ -0.43
SHMT2-223	ENST00000556689	C11orf96	Q7Z7L8	435 aa		12.39	□□□□□ -0.43
SHMT2-223	ENST00000556689	TRAPPC5	Q8IUR0	188 aa		12.39	□□□□□ -0.43
SHMT2-223	ENST00000556689	TMEM126B	Q8IUX1	230 aa		12.39	□□□□□ -0.43
SHMT2-223	ENST00000556689	RHOT1	Q8IXI2	618 aa		12.39	□□□□□ -0.43
SHMT2-223	ENST00000556689	D2HGDH	Q8N465	521 aa		12.39	□□□□□ -0.43
SHMT2-223	ENST00000556689	CNTD1	Q8N815	330 aa		12.39	□□□□□ -0.43
SHMT2-223	ENST00000556689	FDCSP	Q8NFU4	85 aa		12.39	□□□□□ -0.43
SHMT2-223	ENST00000556689	OR8K5	Q8NH50	307 aa		12.39	□□□□□ -0.43
SHMT2-223	ENST00000556689	GDAP1	Q8TB36	358 aa		12.39	□□□□□ -0.43

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