RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 BUD23O43709 281 aaKnown RBP4.35□□□□□ -1.71
SCFD1-221ENST00000556534 KRT86O43790 486 aa4.35□□□□□ -1.71
SCFD1-221ENST00000556534 FGF17O60258 216 aa4.35□□□□□ -1.71
SCFD1-221ENST00000556534 TMCC2O75069 709 aa4.35□□□□□ -1.71
SCFD1-221ENST00000556534 IGKV3-20P01619 116 aa4.35□□□□□ -1.71
SCFD1-221ENST00000556534 ATP1A1P05023 1023 aaKnown RBP4.35□□□□□ -1.71
SCFD1-221ENST00000556534 ZNF23P17027 643 aa4.35□□□□□ -1.71
SCFD1-221ENST00000556534 NR1D1P20393 614 aa4.35□□□□□ -1.71
SCFD1-221ENST00000556534 MCCP23508 829 aa4.35□□□□□ -1.71
SCFD1-221ENST00000556534 HOXD13P35453 343 aa4.35□□□□□ -1.71
SCFD1-221ENST00000556534 HOXA1P49639 335 aaPredicted RBP4.35□□□□□ -1.71
SCFD1-221ENST00000556534 MMP14P50281 582 aa4.35□□□□□ -1.71
SCFD1-221ENST00000556534 EIF5P55010 431 aaKnown RBP4.35□□□□□ -1.71
SCFD1-221ENST00000556534 MC1RQ01726 317 aa4.35□□□□□ -1.71
SCFD1-221ENST00000556534 CREB5Q02930 508 aa4.35□□□□□ -1.71
SCFD1-221ENST00000556534 GAGE5Q13069 117 aa4.35□□□□□ -1.71
SCFD1-221ENST00000556534 GAGE6Q13070 117 aa4.35□□□□□ -1.71
SCFD1-221ENST00000556534 KRT81Q14533 505 aa4.35□□□□□ -1.71
SCFD1-221ENST00000556534 ZNF534Q76KX8 674 aa4.35□□□□□ -1.71
SCFD1-221ENST00000556534 EPHX4Q8IUS5 362 aa4.35□□□□□ -1.71
SCFD1-221ENST00000556534 ARID3BQ8IVW6 561 aaPredicted RBP4.35□□□□□ -1.71
SCFD1-221ENST00000556534 SCYL3Q8IZE3 742 aa4.35□□□□□ -1.71
SCFD1-221ENST00000556534 METTL27Q8N6F8 245 aaPredicted RBP4.35□□□□□ -1.71
SCFD1-221ENST00000556534 C1orf52Q8N6N3 182 aaKnown RBP4.35□□□□□ -1.71
SCFD1-221ENST00000556534 DMBX1Q8NFW5 382 aa4.35□□□□□ -1.71
SCFD1-221ENST00000556534 TIGD1Q96MW7 591 aa4.35□□□□□ -1.71
SCFD1-221ENST00000556534 DACH2Q96NX9 599 aa4.35□□□□□ -1.71
SCFD1-221ENST00000556534 GHITMQ9H3K2 345 aa4.35□□□□□ -1.71
SCFD1-221ENST00000556534 TBC1D29Q9UFV1 150 aa4.35□□□□□ -1.71
SCFD1-221ENST00000556534 DBNLQ9UJU6 430 aaKnown RBP4.35□□□□□ -1.71
SCFD1-221ENST00000556534 PNMA2Q9UL42 364 aa4.35□□□□□ -1.71
SCFD1-221ENST00000556534 A6NCN8 305 aa4.34□□□□□ -1.71
SCFD1-221ENST00000556534 TMEM189-UBE2V1I3L0A0 370 aa4.34□□□□□ -1.71
SCFD1-221ENST00000556534 J3QR06 171 aa4.34□□□□□ -1.71
SCFD1-221ENST00000556534 SYNGR3O43761 229 aa4.34□□□□□ -1.71
SCFD1-221ENST00000556534 PDE9AO76083 593 aa4.34□□□□□ -1.71
SCFD1-221ENST00000556534 TUBBP07437 444 aa4.34□□□□□ -1.71
SCFD1-221ENST00000556534 UBE2V1Q13404 147 aa4.34□□□□□ -1.71
SCFD1-221ENST00000556534 ACVR2BQ13705 512 aa4.34□□□□□ -1.71
SCFD1-221ENST00000556534 MEA1Q16626 185 aa4.34□□□□□ -1.71
SCFD1-221ENST00000556534 MEP1AQ16819 746 aa4.34□□□□□ -1.71
SCFD1-221ENST00000556534 RAB41Q5JT25 222 aa4.34□□□□□ -1.71
SCFD1-221ENST00000556534 PDSS1Q5T2R2 415 aa4.34□□□□□ -1.71
SCFD1-221ENST00000556534 PLXDC2Q6UX71 529 aa4.34□□□□□ -1.71
SCFD1-221ENST00000556534 PIWIL4Q7Z3Z4 852 aaKnown RBP4.34□□□□□ -1.71
SCFD1-221ENST00000556534 PPP4R1Q8TF05 950 aa4.34□□□□□ -1.71
SCFD1-221ENST00000556534 MOAP1Q96BY2 351 aa4.34□□□□□ -1.71
SCFD1-221ENST00000556534 NEUROD6Q96NK8 337 aa4.34□□□□□ -1.71
SCFD1-221ENST00000556534 SLC22A12Q96S37 553 aa4.34□□□□□ -1.71
SCFD1-221ENST00000556534 DDOQ99489 341 aa4.34□□□□□ -1.71
SCFD1-221ENST00000556534 HGH1Q9BTY7 390 aa4.34□□□□□ -1.71
SCFD1-221ENST00000556534 TRMT61BQ9BVS5 477 aaKnown RBP4.34□□□□□ -1.71
SCFD1-221ENST00000556534 RAD21L1Q9H4I0 556 aa4.34□□□□□ -1.71
SCFD1-221ENST00000556534 ZNF334Q9HCZ1 680 aaPredicted RBP4.34□□□□□ -1.71
SCFD1-221ENST00000556534 EXO1Q9UQ84 846 aaKnown RBP4.34□□□□□ -1.71
SCFD1-221ENST00000556534 PRAG1Q86YV5 1406 aa4.34□□□□□ -1.71
SCFD1-221ENST00000556534 IGLV5-45A0A087WSX0 123 aa4.33□□□□□ -1.72
SCFD1-221ENST00000556534 OR2M5A3KFT3 312 aa4.33□□□□□ -1.72
SCFD1-221ENST00000556534 PLK4O00444 970 aa4.33□□□□□ -1.72
SCFD1-221ENST00000556534 DVL1O14640 695 aa4.33□□□□□ -1.72
SCFD1-221ENST00000556534 PAPSS1O43252 624 aaPredicted RBP4.33□□□□□ -1.72
SCFD1-221ENST00000556534 CTSVO60911 334 aa4.33□□□□□ -1.72
SCFD1-221ENST00000556534 MITFO75030 526 aaPredicted RBP4.33□□□□□ -1.72
SCFD1-221ENST00000556534 GJB3O75712 270 aa4.33□□□□□ -1.72
SCFD1-221ENST00000556534 SLC22A3O75751 556 aa4.33□□□□□ -1.72
SCFD1-221ENST00000556534 BAG4O95429 457 aaKnown RBP4.33□□□□□ -1.72
SCFD1-221ENST00000556534 PLGP00747 810 aaPredicted RBP4.33□□□□□ -1.72
SCFD1-221ENST00000556534 CSF2RAP15509 400 aa4.33□□□□□ -1.72
SCFD1-221ENST00000556534 PRLRP16471 622 aa4.33□□□□□ -1.72
SCFD1-221ENST00000556534 NR2F2P24468 414 aa4.33□□□□□ -1.72
SCFD1-221ENST00000556534 DVL1P1P54792 670 aaPredicted RBP4.33□□□□□ -1.72
SCFD1-221ENST00000556534 NAP1L1P55209 391 aaKnown RBP4.33□□□□□ -1.72
SCFD1-221ENST00000556534 MZT2BQ6NZ67 158 aa4.33□□□□□ -1.72
SCFD1-221ENST00000556534 MCEMP1Q8IX19 187 aa4.33□□□□□ -1.72
SCFD1-221ENST00000556534 GBGT1Q8N5D6 347 aa4.33□□□□□ -1.72
SCFD1-221ENST00000556534 NSUN4Q96CB9 384 aaKnown RBP4.33□□□□□ -1.72
SCFD1-221ENST00000556534 SCRN2Q96FV2 425 aa4.33□□□□□ -1.72
SCFD1-221ENST00000556534 CCDC34Q96HJ3 373 aa4.33□□□□□ -1.72
SCFD1-221ENST00000556534 OXNAD1Q96HP4 312 aaPredicted RBP4.33□□□□□ -1.72
SCFD1-221ENST00000556534 SLX1AQ9BQ83 275 aa4.33□□□□□ -1.72
SCFD1-221ENST00000556534 SMARCAD1Q9H4L7 1026 aa4.33□□□□□ -1.72
SCFD1-221ENST00000556534 DNAJC18Q9H819 358 aa4.33□□□□□ -1.72
SCFD1-221ENST00000556534 TRPC7Q9HCX4 862 aa4.33□□□□□ -1.72
SCFD1-221ENST00000556534 HAUS2Q9NVX0 235 aa4.33□□□□□ -1.72
SCFD1-221ENST00000556534 WSB2Q9NYS7 404 aaPredicted RBP4.33□□□□□ -1.72
SCFD1-221ENST00000556534 SUCLA2Q9P2R7 463 aaPredicted RBP4.33□□□□□ -1.72
SCFD1-221ENST00000556534 DNAJB4Q9UDY4 337 aa4.33□□□□□ -1.72
SCFD1-221ENST00000556534 VPS28Q9UK41 221 aa4.33□□□□□ -1.72
SCFD1-221ENST00000556534 FAF1Q9UNN5 650 aaPredicted RBP4.33□□□□□ -1.72
SCFD1-221ENST00000556534 A0A0G2JNG1 304 aa4.32□□□□□ -1.72
SCFD1-221ENST00000556534 LNP1A1A4G5 178 aa4.32□□□□□ -1.72
SCFD1-221ENST00000556534 ZBTB43O43298 467 aa4.32□□□□□ -1.72
SCFD1-221ENST00000556534 GRID2O43424 1007 aa4.32□□□□□ -1.72
SCFD1-221ENST00000556534 GH2P01242 217 aa4.32□□□□□ -1.72
SCFD1-221ENST00000556534 SP1P08047 785 aa4.32□□□□□ -1.72
SCFD1-221ENST00000556534 MMP9P14780 707 aa4.32□□□□□ -1.72
SCFD1-221ENST00000556534 TIMP3P35625 211 aa4.32□□□□□ -1.72
SCFD1-221ENST00000556534 SLC15A1P46059 708 aa4.32□□□□□ -1.72
SCFD1-221ENST00000556534 MMP15P51511 669 aa4.32□□□□□ -1.72
SCFD1-221ENST00000556534 SUOXP51687 545 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms