RNA–Protein interactions for RNA: ENST00000556315.5

ATXN3-239, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 924 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-239ENST00000556315 SPRED1Q7Z699 444 aa4.86□□□□□ -1.63
ATXN3-239ENST00000556315 TMEM110Q86TL2 294 aa4.86□□□□□ -1.63
ATXN3-239ENST00000556315 SETD3Q86TU7 594 aaPredicted RBP4.86□□□□□ -1.63
ATXN3-239ENST00000556315 PIM3Q86V86 326 aa4.86□□□□□ -1.63
ATXN3-239ENST00000556315 VPS36Q86VN1 386 aa4.86□□□□□ -1.63
ATXN3-239ENST00000556315 HEATR4Q86WZ0 1026 aa4.86□□□□□ -1.63
ATXN3-239ENST00000556315 TICAM1Q8IUC6 712 aa4.86□□□□□ -1.63
ATXN3-239ENST00000556315 CACNA2D3Q8IZS8 1091 aa4.86□□□□□ -1.63
ATXN3-239ENST00000556315 PCDH20Q8N6Y1 951 aaKnown RBP4.86□□□□□ -1.63
ATXN3-239ENST00000556315 CCDC112Q8NEF3 446 aa4.86□□□□□ -1.63
ATXN3-239ENST00000556315 FAM46DQ8NEK8 389 aa4.86□□□□□ -1.63
ATXN3-239ENST00000556315 TSACCQ96A04 125 aaPredicted RBP4.86□□□□□ -1.63
ATXN3-239ENST00000556315 ZNF396Q96N95 335 aaPredicted RBP4.86□□□□□ -1.63
ATXN3-239ENST00000556315 TUBGCP5Q96RT8 1024 aa4.86□□□□□ -1.63
ATXN3-239ENST00000556315 PSMB7Q99436 277 aa4.86□□□□□ -1.63
ATXN3-239ENST00000556315 BTBD2Q9BX70 525 aa4.86□□□□□ -1.63
ATXN3-239ENST00000556315 THAP9Q9H5L6 903 aa4.86□□□□□ -1.63
ATXN3-239ENST00000556315 PRDM8Q9NQV8 689 aa4.86□□□□□ -1.63
ATXN3-239ENST00000556315 KCND1Q9NSA2 647 aa4.86□□□□□ -1.63
ATXN3-239ENST00000556315 LRIT1Q9P2V4 623 aa4.86□□□□□ -1.63
ATXN3-239ENST00000556315 HECAQ9UBI9 543 aaPredicted RBP4.86□□□□□ -1.63
ATXN3-239ENST00000556315 VPS51Q9UID3 782 aa4.86□□□□□ -1.63
ATXN3-239ENST00000556315 ZFP69BQ9UJL9 534 aa4.86□□□□□ -1.63
ATXN3-239ENST00000556315 CROTQ9UKG9 612 aa4.86□□□□□ -1.63
ATXN3-239ENST00000556315 VANGL2Q9ULK5 521 aa4.86□□□□□ -1.63
ATXN3-239ENST00000556315 PNMA8BQ9ULN7 279 aaPredicted RBP4.86□□□□□ -1.63
ATXN3-239ENST00000556315 PLXNA2O75051 1894 aa4.86□□□□□ -1.63
ATXN3-239ENST00000556315 A0A0D9SEW6 157 aa4.85□□□□□ -1.63
ATXN3-239ENST00000556315 DRGXA6NNA5 263 aa4.85□□□□□ -1.63
ATXN3-239ENST00000556315 EFCAB7A8K855 629 aa4.85□□□□□ -1.63
ATXN3-239ENST00000556315 AREL1O15033 823 aa4.85□□□□□ -1.63
ATXN3-239ENST00000556315 CETN3O15182 167 aa4.85□□□□□ -1.63
ATXN3-239ENST00000556315 NUDT21O43809 227 aaKnown RBP4.85□□□□□ -1.63
ATXN3-239ENST00000556315 RAD1O60671 282 aa4.85□□□□□ -1.63
ATXN3-239ENST00000556315 YEATS4O95619 227 aa4.85□□□□□ -1.63
ATXN3-239ENST00000556315 PRKCGP05129 697 aa4.85□□□□□ -1.63
ATXN3-239ENST00000556315 EPB41P11171 864 aaKnown RBP4.85□□□□□ -1.63
ATXN3-239ENST00000556315 GNLYP22749 145 aa4.85□□□□□ -1.63
ATXN3-239ENST00000556315 APEX1P27695 318 aaKnown RBP4.85□□□□□ -1.63
ATXN3-239ENST00000556315 GPD2P43304 727 aa4.85□□□□□ -1.63
ATXN3-239ENST00000556315 CCNHP51946 323 aaPredicted RBP4.85□□□□□ -1.63
ATXN3-239ENST00000556315 SRP54P61011 504 aaKnown RBP4.85□□□□□ -1.63
ATXN3-239ENST00000556315 SLC6A3Q01959 620 aa4.85□□□□□ -1.63
ATXN3-239ENST00000556315 LRMPQ12912 555 aa4.85□□□□□ -1.63
ATXN3-239ENST00000556315 TRA2AQ13595 282 aaKnown RBP eCLIP4.85□□□□□ -1.63
ATXN3-239ENST00000556315 HLTFQ14527 1009 aaKnown RBP eCLIP4.85□□□□□ -1.63
ATXN3-239ENST00000556315 ALG11Q2TAA5 492 aa4.85□□□□□ -1.63
ATXN3-239ENST00000556315 DEFB109BQ30KR1 87 aa4.85□□□□□ -1.63
ATXN3-239ENST00000556315 EDRF1Q3B7T1 1238 aa4.85□□□□□ -1.63
ATXN3-239ENST00000556315 C14orf28Q4W4Y0 310 aa4.85□□□□□ -1.63
ATXN3-239ENST00000556315 ZNF805Q5CZA5 627 aa4.85□□□□□ -1.63
ATXN3-239ENST00000556315 DCAF12Q5T6F0 453 aa4.85□□□□□ -1.63
ATXN3-239ENST00000556315 PRAMEF9Q5VWM5 478 aa4.85□□□□□ -1.63
ATXN3-239ENST00000556315 RESP18Q5W5W9 173 aa4.85□□□□□ -1.63
ATXN3-239ENST00000556315 TCTN3Q6NUS6 607 aa4.85□□□□□ -1.63
ATXN3-239ENST00000556315 C22orf39Q6P5X5 142 aa4.85□□□□□ -1.63
ATXN3-239ENST00000556315 ENPP7Q6UWV6 458 aa4.85□□□□□ -1.63
ATXN3-239ENST00000556315 LRRC31Q6UY01 552 aa4.85□□□□□ -1.63
ATXN3-239ENST00000556315 LINGO4Q6UY18 593 aa4.85□□□□□ -1.63
ATXN3-239ENST00000556315 ZNF783Q6ZMS7 281 aa4.85□□□□□ -1.63
ATXN3-239ENST00000556315 LHFPL2Q6ZUX7 228 aa4.85□□□□□ -1.63
ATXN3-239ENST00000556315 ESPNLQ6ZVH7 1005 aa4.85□□□□□ -1.63
ATXN3-239ENST00000556315 PARS2Q7L3T8 475 aaKnown RBP4.85□□□□□ -1.63
ATXN3-239ENST00000556315 RD3Q7Z3Z2 195 aa4.85□□□□□ -1.63
ATXN3-239ENST00000556315 TAF8Q7Z7C8 310 aa4.85□□□□□ -1.63
ATXN3-239ENST00000556315 TTC7BQ86TV6 843 aa4.85□□□□□ -1.63
ATXN3-239ENST00000556315 GRAMD1CQ8IYS0 662 aa4.85□□□□□ -1.63
ATXN3-239ENST00000556315 DEFB106AQ8N104 65 aa4.85□□□□□ -1.63
ATXN3-239ENST00000556315 GUF1Q8N442 669 aaKnown RBP4.85□□□□□ -1.63
ATXN3-239ENST00000556315 RYBPQ8N488 228 aaPredicted RBP4.85□□□□□ -1.63
ATXN3-239ENST00000556315 DCAF4L2Q8NA75 395 aa4.85□□□□□ -1.63
ATXN3-239ENST00000556315 SLC16A11Q8NCK7 471 aa4.85□□□□□ -1.63
ATXN3-239ENST00000556315 CLRN3Q8NCR9 226 aa4.85□□□□□ -1.63
ATXN3-239ENST00000556315 CCDC47Q96A33 483 aaKnown RBP4.85□□□□□ -1.63
ATXN3-239ENST00000556315 KIAA1143Q96AT1 154 aaPredicted RBP4.85□□□□□ -1.63
ATXN3-239ENST00000556315 ISG20Q96AZ6 181 aaKnown RBP4.85□□□□□ -1.63
ATXN3-239ENST00000556315 LCORQ96JN0 433 aaPredicted RBP4.85□□□□□ -1.63
ATXN3-239ENST00000556315 C1orf74Q96LT6 269 aa4.85□□□□□ -1.63
ATXN3-239ENST00000556315 ZSWIM1Q9BR11 485 aa4.85□□□□□ -1.63
ATXN3-239ENST00000556315 TACO1Q9BSH4 297 aaKnown RBP4.85□□□□□ -1.63
ATXN3-239ENST00000556315 DDA1Q9BW61 102 aa4.85□□□□□ -1.63
ATXN3-239ENST00000556315 INTS2Q9H0H0 1204 aaKnown RBP4.85□□□□□ -1.63
ATXN3-239ENST00000556315 SIK2Q9H0K1 926 aa4.85□□□□□ -1.63
ATXN3-239ENST00000556315 OR10A5Q9H207 317 aa4.85□□□□□ -1.63
ATXN3-239ENST00000556315 FAM204AQ9H8W3 233 aa4.85□□□□□ -1.63
ATXN3-239ENST00000556315 GPN2Q9H9Y4 310 aaPredicted RBP4.85□□□□□ -1.63
ATXN3-239ENST00000556315 MBNL1Q9NR56 388 aaKnown RBP4.85□□□□□ -1.63
ATXN3-239ENST00000556315 DDIT4Q9NX09 232 aa4.85□□□□□ -1.63
ATXN3-239ENST00000556315 SLC39A1Q9NY26 324 aa4.85□□□□□ -1.63
ATXN3-239ENST00000556315 MTMR6Q9Y217 621 aa4.85□□□□□ -1.63
ATXN3-239ENST00000556315 HS3ST4Q9Y661 456 aa4.85□□□□□ -1.63
ATXN3-239ENST00000556315 DGKBQ9Y6T7 804 aa4.85□□□□□ -1.63
ATXN3-239ENST00000556315 USP9YO00507 2555 aaPredicted RBP4.84□□□□□ -1.63
ATXN3-239ENST00000556315 LRRK2Q5S007 2527 aa4.84□□□□□ -1.63
ATXN3-239ENST00000556315 TLN1Q9Y490 2541 aaKnown RBP4.84□□□□□ -1.63
ATXN3-239ENST00000556315 SYNJ2BP-COX16A0A087WUM0 186 aa4.84□□□□□ -1.63
ATXN3-239ENST00000556315 IGHV5-10-1A0A0J9YXX1 117 aa4.84□□□□□ -1.63
ATXN3-239ENST00000556315 CXorf51AA0A1B0GTR3 108 aa4.84□□□□□ -1.63
ATXN3-239ENST00000556315 ILVBLA1L0T0 632 aa4.84□□□□□ -1.63
ATXN3-239ENST00000556315 A1L4Q6 167 aa4.84□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms