RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 CFC1BP0CG36 223 aa3.11□□□□□ -1.91
VRK1-202ENST00000553683 CFC1P0CG37 223 aa3.11□□□□□ -1.91
VRK1-202ENST00000553683 ACADMP11310 421 aa3.11□□□□□ -1.91
VRK1-202ENST00000553683 FGF5P12034 268 aa3.11□□□□□ -1.91
VRK1-202ENST00000553683 SELLP14151 372 aa3.11□□□□□ -1.91
VRK1-202ENST00000553683 NR2F2P24468 414 aa3.11□□□□□ -1.91
VRK1-202ENST00000553683 SETQ01105 290 aaPredicted RBP3.11□□□□□ -1.91
VRK1-202ENST00000553683 PMP22Q01453 160 aa3.11□□□□□ -1.91
VRK1-202ENST00000553683 CDC16Q13042 620 aa3.11□□□□□ -1.91
VRK1-202ENST00000553683 DUOXA1Q1HG43 343 aa3.11□□□□□ -1.91
VRK1-202ENST00000553683 SFMBT2Q5VUG0 894 aa3.11□□□□□ -1.91
VRK1-202ENST00000553683 SNX30Q5VWJ9 437 aa3.11□□□□□ -1.91
VRK1-202ENST00000553683 KLHL35Q6PF15 583 aa3.11□□□□□ -1.91
VRK1-202ENST00000553683 PLXDC2Q6UX71 529 aa3.11□□□□□ -1.91
VRK1-202ENST00000553683 CFAP77Q6ZQR2 320 aa3.11□□□□□ -1.91
VRK1-202ENST00000553683 CCDC190Q86UF4 302 aa3.11□□□□□ -1.91
VRK1-202ENST00000553683 KLHDC8BQ8IXV7 354 aa3.11□□□□□ -1.91
VRK1-202ENST00000553683 C1orf52Q8N6N3 182 aaKnown RBP3.11□□□□□ -1.91
VRK1-202ENST00000553683 ZBTB8BQ8NAP8 495 aaPredicted RBP3.11□□□□□ -1.91
VRK1-202ENST00000553683 TRIM58Q8NG06 486 aa3.11□□□□□ -1.91
VRK1-202ENST00000553683 OR10V1Q8NGI7 309 aa3.11□□□□□ -1.91
VRK1-202ENST00000553683 HMGCLL1Q8TB92 370 aa3.11□□□□□ -1.91
VRK1-202ENST00000553683 SCFD2Q8WU76 684 aa3.11□□□□□ -1.91
VRK1-202ENST00000553683 SMPDL3BQ92485 455 aa3.11□□□□□ -1.91
VRK1-202ENST00000553683 TM9SF4Q92544 642 aa3.11□□□□□ -1.91
VRK1-202ENST00000553683 USP6NLQ92738 828 aa3.11□□□□□ -1.91
VRK1-202ENST00000553683 ALG14Q96F25 216 aa3.11□□□□□ -1.91
VRK1-202ENST00000553683 BARHL1Q9BZE3 327 aa3.11□□□□□ -1.91
VRK1-202ENST00000553683 TFB2MQ9H5Q4 396 aaKnown RBP3.11□□□□□ -1.91
VRK1-202ENST00000553683 KAT14Q9H8E8 782 aa3.11□□□□□ -1.91
VRK1-202ENST00000553683 AASSQ9UDR5 926 aa3.11□□□□□ -1.91
VRK1-202ENST00000553683 FAF1Q9UNN5 650 aaPredicted RBP3.11□□□□□ -1.91
VRK1-202ENST00000553683 SMCHD1A6NHR9 2005 aa3.1□□□□□ -1.91
VRK1-202ENST00000553683 FRMD3A2A2Y4 597 aa3.1□□□□□ -1.91
VRK1-202ENST00000553683 PI4KAP2A4QPH2 592 aa3.1□□□□□ -1.91
VRK1-202ENST00000553683 C5orf60A6NFR6 353 aa3.1□□□□□ -1.91
VRK1-202ENST00000553683 PGPEP1LA6NFU8 196 aa3.1□□□□□ -1.91
VRK1-202ENST00000553683 HS6ST1O60243 411 aa3.1□□□□□ -1.91
VRK1-202ENST00000553683 USO1O60763 962 aaKnown RBP3.1□□□□□ -1.91
VRK1-202ENST00000553683 ZNF217O75362 1048 aa3.1□□□□□ -1.91
VRK1-202ENST00000553683 BAIAP3O94812 1187 aa3.1□□□□□ -1.91
VRK1-202ENST00000553683 OR2C1O95371 312 aa3.1□□□□□ -1.91
VRK1-202ENST00000553683 CAVIN2O95810 425 aa3.1□□□□□ -1.91
VRK1-202ENST00000553683 LDLRP01130 860 aa3.1□□□□□ -1.91
VRK1-202ENST00000553683 CGAP01215 116 aa3.1□□□□□ -1.91
VRK1-202ENST00000553683 GH2P01242 217 aa3.1□□□□□ -1.91
VRK1-202ENST00000553683 ANXA7P20073 488 aaKnown RBP3.1□□□□□ -1.91
VRK1-202ENST00000553683 NR1D1P20393 614 aa3.1□□□□□ -1.91
VRK1-202ENST00000553683 HRH2P25021 359 aa3.1□□□□□ -1.91
VRK1-202ENST00000553683 TM4SF1P30408 202 aa3.1□□□□□ -1.91
VRK1-202ENST00000553683 MSH2P43246 934 aa3.1□□□□□ -1.91
VRK1-202ENST00000553683 NR0B1P51843 470 aaKnown RBP3.1□□□□□ -1.91
VRK1-202ENST00000553683 GALCP54803 685 aa3.1□□□□□ -1.91
VRK1-202ENST00000553683 DRG2P55039 364 aaKnown RBP3.1□□□□□ -1.91
VRK1-202ENST00000553683 MED22Q15528 200 aa3.1□□□□□ -1.91
VRK1-202ENST00000553683 ASTE1Q2TB18 679 aaPredicted RBP3.1□□□□□ -1.91
VRK1-202ENST00000553683 ZSCAN23Q3MJ62 389 aa3.1□□□□□ -1.91
VRK1-202ENST00000553683 TECRLQ5HYJ1 363 aa3.1□□□□□ -1.91
VRK1-202ENST00000553683 ZDHHC20Q5W0Z9 365 aa3.1□□□□□ -1.91
VRK1-202ENST00000553683 CEACAM20Q6UY09 585 aa3.1□□□□□ -1.91
VRK1-202ENST00000553683 ZNF534Q76KX8 674 aa3.1□□□□□ -1.91
VRK1-202ENST00000553683 PIWIL4Q7Z3Z4 852 aaKnown RBP3.1□□□□□ -1.91
VRK1-202ENST00000553683 LONP2Q86WA8 852 aa3.1□□□□□ -1.91
VRK1-202ENST00000553683 ARID3BQ8IVW6 561 aaPredicted RBP3.1□□□□□ -1.91
VRK1-202ENST00000553683 TEX11Q8IYF3 940 aa3.1□□□□□ -1.91
VRK1-202ENST00000553683 KCNG4Q8TDN1 519 aa3.1□□□□□ -1.91
VRK1-202ENST00000553683 UCMAQ8WVF2 138 aa3.1□□□□□ -1.91
VRK1-202ENST00000553683 ZNF524Q96C55 264 aa3.1□□□□□ -1.91
VRK1-202ENST00000553683 ZNF501Q96CX3 271 aaPredicted RBP3.1□□□□□ -1.91
VRK1-202ENST00000553683 STAMBPL1Q96FJ0 436 aa3.1□□□□□ -1.91
VRK1-202ENST00000553683 CMTM3Q96MX0 182 aa3.1□□□□□ -1.91
VRK1-202ENST00000553683 NEUROD6Q96NK8 337 aa3.1□□□□□ -1.91
VRK1-202ENST00000553683 SLC22A12Q96S37 553 aa3.1□□□□□ -1.91
VRK1-202ENST00000553683 GFI1Q99684 422 aa3.1□□□□□ -1.91
VRK1-202ENST00000553683 NAP1L4Q99733 375 aaKnown RBP3.1□□□□□ -1.91
VRK1-202ENST00000553683 UPF2Q9HAU5 1272 aaKnown RBP3.1□□□□□ -1.91
VRK1-202ENST00000553683 KLHL9Q9P2J3 617 aa3.1□□□□□ -1.91
VRK1-202ENST00000553683 ZNF624Q9P2J8 865 aaPredicted RBP3.1□□□□□ -1.91
VRK1-202ENST00000553683 R3HDM2Q9Y2K5 976 aaKnown RBP3.1□□□□□ -1.91
VRK1-202ENST00000553683 CMAHPQ9Y471 501 aa3.1□□□□□ -1.91
VRK1-202ENST00000553683 SMIM1B2RUZ4 78 aa3.09□□□□□ -1.91
VRK1-202ENST00000553683 TMEM178BH3BS89 294 aa3.09□□□□□ -1.91
VRK1-202ENST00000553683 NTN3O00634 580 aaPredicted RBP3.09□□□□□ -1.91
VRK1-202ENST00000553683 WISP2O76076 250 aa3.09□□□□□ -1.91
VRK1-202ENST00000553683 HOXC8P31273 242 aa3.09□□□□□ -1.91
VRK1-202ENST00000553683 PPARGP37231 505 aaPredicted RBP3.09□□□□□ -1.91
VRK1-202ENST00000553683 CAMPP49913 170 aa3.09□□□□□ -1.91
VRK1-202ENST00000553683 LINC01547P58512 204 aaPredicted RBP3.09□□□□□ -1.91
VRK1-202ENST00000553683 DCAF7P61962 342 aa3.09□□□□□ -1.91
VRK1-202ENST00000553683 SPOCK1Q08629 439 aa3.09□□□□□ -1.91
VRK1-202ENST00000553683 WDR38Q5JTN6 314 aa3.09□□□□□ -1.91
VRK1-202ENST00000553683 GKAP1Q5VSY0 366 aaPredicted RBP3.09□□□□□ -1.91
VRK1-202ENST00000553683 IKBIPQ70UQ0 350 aa3.09□□□□□ -1.91
VRK1-202ENST00000553683 GPALPP1Q8IXQ4 340 aa3.09□□□□□ -1.91
VRK1-202ENST00000553683 ADGRF2Q8IZF7 708 aa3.09□□□□□ -1.91
VRK1-202ENST00000553683 GBGT1Q8N5D6 347 aa3.09□□□□□ -1.91
VRK1-202ENST00000553683 HJURPQ8NCD3 748 aaPredicted RBP3.09□□□□□ -1.91
VRK1-202ENST00000553683 TMEM190Q8WZ59 177 aa3.09□□□□□ -1.91
VRK1-202ENST00000553683 ASCL2Q99929 193 aa3.09□□□□□ -1.91
VRK1-202ENST00000553683 TREX2Q9BQ50 279 aaPredicted RBP3.09□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms