RNA–Protein interactions for RNA: ENST00000553308.1

SYNE2-209, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 557 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-209ENST00000553308 SKILP12757 684 aa8.9□□□□□ -0.98
SYNE2-209ENST00000553308 CDK11BP21127 795 aaKnown RBP8.9□□□□□ -0.98
SYNE2-209ENST00000553308 IDSP22304 550 aa8.9□□□□□ -0.98
SYNE2-209ENST00000553308 CCNCP24863 283 aa8.9□□□□□ -0.98
SYNE2-209ENST00000553308 GJC1P36383 396 aa8.9□□□□□ -0.98
SYNE2-209ENST00000553308 ARSEP51690 589 aa8.9□□□□□ -0.98
SYNE2-209ENST00000553308 RPS15P62841 145 aaKnown RBP8.9□□□□□ -0.98
SYNE2-209ENST00000553308 GBE1Q04446 702 aa8.9□□□□□ -0.98
SYNE2-209ENST00000553308 GPS2Q13227 327 aa8.9□□□□□ -0.98
SYNE2-209ENST00000553308 DPYSL3Q14195 570 aa8.9□□□□□ -0.98
SYNE2-209ENST00000553308 PIGHQ14442 188 aaPredicted RBP8.9□□□□□ -0.98
SYNE2-209ENST00000553308 IFI16Q16666 785 aaKnown RBP8.9□□□□□ -0.98
SYNE2-209ENST00000553308 ATP13A4Q4VNC1 1196 aa8.9□□□□□ -0.98
SYNE2-209ENST00000553308 AGAP9Q5VTM2 703 aa8.9□□□□□ -0.98
SYNE2-209ENST00000553308 FAM69BQ5VUD6 431 aa8.9□□□□□ -0.98
SYNE2-209ENST00000553308 WASH2PQ6VEQ5 465 aa8.9□□□□□ -0.98
SYNE2-209ENST00000553308 C11orf96Q7Z7L8 435 aa8.9□□□□□ -0.98
SYNE2-209ENST00000553308 CPNE8Q86YQ8 564 aa8.9□□□□□ -0.98
SYNE2-209ENST00000553308 RBM12BQ8IXT5 1001 aaKnown RBP8.9□□□□□ -0.98
SYNE2-209ENST00000553308 TRAM1L1Q8N609 369 aa8.9□□□□□ -0.98
SYNE2-209ENST00000553308 RBMXL3Q8N7X1 1067 aaKnown RBP8.9□□□□□ -0.98
SYNE2-209ENST00000553308 NIPA2Q8N8Q9 360 aa8.9□□□□□ -0.98
SYNE2-209ENST00000553308 FDCSPQ8NFU4 85 aa8.9□□□□□ -0.98
SYNE2-209ENST00000553308 FAM71BQ8TC56 605 aa8.9□□□□□ -0.98
SYNE2-209ENST00000553308 ADAMTS17Q8TE56 1095 aa8.9□□□□□ -0.98
SYNE2-209ENST00000553308 UBXN4Q92575 508 aa8.9□□□□□ -0.98
SYNE2-209ENST00000553308 MR1Q95460 341 aa8.9□□□□□ -0.98
SYNE2-209ENST00000553308 FATE1Q969F0 183 aa8.9□□□□□ -0.98
SYNE2-209ENST00000553308 C19orf60Q96EN9 201 aa8.9□□□□□ -0.98
SYNE2-209ENST00000553308 TRIM11Q96F44 468 aa8.9□□□□□ -0.98
SYNE2-209ENST00000553308 ZNF514Q96K75 400 aaPredicted RBP8.9□□□□□ -0.98
SYNE2-209ENST00000553308 FCRL4Q96PJ5 515 aa8.9□□□□□ -0.98
SYNE2-209ENST00000553308 TSGA13Q96PP4 275 aa8.9□□□□□ -0.98
SYNE2-209ENST00000553308 NUDT9Q9BW91 350 aa8.9□□□□□ -0.98
SYNE2-209ENST00000553308 SLC29A3Q9BZD2 475 aa8.9□□□□□ -0.98
SYNE2-209ENST00000553308 ZFYVE1Q9HBF4 777 aa8.9□□□□□ -0.98
SYNE2-209ENST00000553308 SLAMF7Q9NQ25 335 aa8.9□□□□□ -0.98
SYNE2-209ENST00000553308 WASH6PQ9NQA3 447 aa8.9□□□□□ -0.98
SYNE2-209ENST00000553308 NFKBIL1Q9UBC1 381 aaPredicted RBP8.9□□□□□ -0.98
SYNE2-209ENST00000553308 ANAPC7Q9UJX3 599 aa8.9□□□□□ -0.98
SYNE2-209ENST00000553308 TMPRSS11EQ9UL52 423 aa8.9□□□□□ -0.98
SYNE2-209ENST00000553308 FARSAQ9Y285 508 aaKnown RBP8.9□□□□□ -0.98
SYNE2-209ENST00000553308 ZNF451Q9Y4E5 1061 aa8.9□□□□□ -0.98
SYNE2-209ENST00000553308 MED13Q9UHV7 2174 aa8.9□□□□□ -0.98
SYNE2-209ENST00000553308 PCSK5Q92824 1860 aa8.89□□□□□ -0.99
SYNE2-209ENST00000553308 WIPF3A6NGB9 483 aa8.89□□□□□ -0.99
SYNE2-209ENST00000553308 KCNK1O00180 336 aa8.89□□□□□ -0.99
SYNE2-209ENST00000553308 ZNF185O15231 689 aa8.89□□□□□ -0.99
SYNE2-209ENST00000553308 VEGFDO43915 354 aa8.89□□□□□ -0.99
SYNE2-209ENST00000553308 DPM1O60762 260 aa8.89□□□□□ -0.99
SYNE2-209ENST00000553308 CPNE3O75131 537 aaKnown RBP8.89□□□□□ -0.99
SYNE2-209ENST00000553308 SCRG1O75711 98 aa8.89□□□□□ -0.99
SYNE2-209ENST00000553308 TMEM63AO94886 807 aa8.89□□□□□ -0.99
SYNE2-209ENST00000553308 CDK14O94921 469 aa8.89□□□□□ -0.99
SYNE2-209ENST00000553308 LDLRP01130 860 aa8.89□□□□□ -0.99
SYNE2-209ENST00000553308 JCHAINP01591 159 aa8.89□□□□□ -0.99
SYNE2-209ENST00000553308 BPIP17213 487 aa8.89□□□□□ -0.99
SYNE2-209ENST00000553308 LPOP22079 712 aaPredicted RBP8.89□□□□□ -0.99
SYNE2-209ENST00000553308 FECHP22830 423 aa8.89□□□□□ -0.99
SYNE2-209ENST00000553308 PRKCIP41743 596 aa8.89□□□□□ -0.99
SYNE2-209ENST00000553308 SSR1P43307 286 aaKnown RBP8.89□□□□□ -0.99
SYNE2-209ENST00000553308 PDE1BQ01064 536 aa8.89□□□□□ -0.99
SYNE2-209ENST00000553308 ACY1Q03154 408 aa8.89□□□□□ -0.99
SYNE2-209ENST00000553308 KLHL30Q0D2K2 578 aa8.89□□□□□ -0.99
SYNE2-209ENST00000553308 SLC10A2Q12908 348 aaPredicted RBP8.89□□□□□ -0.99
SYNE2-209ENST00000553308 ZBTB17Q13105 803 aa8.89□□□□□ -0.99
SYNE2-209ENST00000553308 NR6A1Q15406 480 aa8.89□□□□□ -0.99
SYNE2-209ENST00000553308 GPR19Q15760 415 aa8.89□□□□□ -0.99
SYNE2-209ENST00000553308 DNTTIP2Q5QJE6 756 aaKnown RBP8.89□□□□□ -0.99
SYNE2-209ENST00000553308 CCDC183Q5T5S1 534 aa8.89□□□□□ -0.99
SYNE2-209ENST00000553308 PRAMEF17Q5VTA0 474 aa8.89□□□□□ -0.99
SYNE2-209ENST00000553308 PDPK2PQ6A1A2 396 aa8.89□□□□□ -0.99
SYNE2-209ENST00000553308 LCN10Q6JVE6 187 aa8.89□□□□□ -0.99
SYNE2-209ENST00000553308 ZNF517Q6ZMY9 492 aaPredicted RBP8.89□□□□□ -0.99
SYNE2-209ENST00000553308 RBM43Q6ZSC3 357 aaKnown RBP8.89□□□□□ -0.99
SYNE2-209ENST00000553308 TMC3Q7Z5M5 1100 aa8.89□□□□□ -0.99
SYNE2-209ENST00000553308 TRAPPC5Q8IUR0 188 aa8.89□□□□□ -0.99
SYNE2-209ENST00000553308 TMEM126BQ8IUX1 230 aa8.89□□□□□ -0.99
SYNE2-209ENST00000553308 TTC30BQ8N4P2 665 aa8.89□□□□□ -0.99
SYNE2-209ENST00000553308 CNTD1Q8N815 330 aa8.89□□□□□ -0.99
SYNE2-209ENST00000553308 SLC38A9Q8NBW4 561 aa8.89□□□□□ -0.99
SYNE2-209ENST00000553308 HDAC11Q96DB2 347 aa8.89□□□□□ -0.99
SYNE2-209ENST00000553308 TRIB3Q96RU7 358 aa8.89□□□□□ -0.99
SYNE2-209ENST00000553308 ADGRE3Q9BY15 652 aa8.89□□□□□ -0.99
SYNE2-209ENST00000553308 CEP41Q9BYV8 373 aa8.89□□□□□ -0.99
SYNE2-209ENST00000553308 THAP2Q9H0W7 228 aa8.89□□□□□ -0.99
SYNE2-209ENST00000553308 ISCUQ9H1K1 167 aa8.89□□□□□ -0.99
SYNE2-209ENST00000553308 CHST8Q9H2A9 424 aa8.89□□□□□ -0.99
SYNE2-209ENST00000553308 HAUS2Q9NVX0 235 aa8.89□□□□□ -0.99
SYNE2-209ENST00000553308 AIPL1Q9NZN9 384 aa8.89□□□□□ -0.99
SYNE2-209ENST00000553308 ZNF711Q9Y462 761 aa8.89□□□□□ -0.99
SYNE2-209ENST00000553308 PCDHGB7Q9Y5F8 929 aa8.89□□□□□ -0.99
SYNE2-209ENST00000553308 CREBBPQ92793 2442 aa8.88□□□□□ -0.99
SYNE2-209ENST00000553308 TLCD2A6NGC4 264 aa8.88□□□□□ -0.99
SYNE2-209ENST00000553308 A6NL46 340 aa8.88□□□□□ -0.99
SYNE2-209ENST00000553308 AURKAO14965 403 aa8.88□□□□□ -0.99
SYNE2-209ENST00000553308 DDX3YO15523 660 aaKnown RBP8.88□□□□□ -0.99
SYNE2-209ENST00000553308 GPR39O43194 453 aa8.88□□□□□ -0.99
SYNE2-209ENST00000553308 HALP42357 657 aa8.88□□□□□ -0.99
SYNE2-209ENST00000553308 ARL4DP49703 201 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms