RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 ABRQ12979 859 aa12.65□□□□□ -0.38
VPS29-211ENST00000553128 ZXDCQ2QGD7 858 aaPredicted RBP12.65□□□□□ -0.38
VPS29-211ENST00000553128 RALGPS1Q5JS13 557 aa12.65□□□□□ -0.38
VPS29-211ENST00000553128 VWA5B1Q5TIE3 1220 aa12.65□□□□□ -0.38
VPS29-211ENST00000553128 MARC1Q5VT66 337 aa12.65□□□□□ -0.38
VPS29-211ENST00000553128 HGSNATQ68CP4 663 aa12.65□□□□□ -0.38
VPS29-211ENST00000553128 CYB5D1Q6P9G0 228 aa12.65□□□□□ -0.38
VPS29-211ENST00000553128 FBXO38Q6PIJ6 1188 aa12.65□□□□□ -0.38
VPS29-211ENST00000553128 FAM198BQ6UWH4 519 aa12.65□□□□□ -0.38
VPS29-211ENST00000553128 ABRAXAS1Q6UWZ7 409 aa12.65□□□□□ -0.38
VPS29-211ENST00000553128 MED25Q71SY5 747 aa12.65□□□□□ -0.38
VPS29-211ENST00000553128 MCOLN2Q8IZK6 566 aa12.65□□□□□ -0.38
VPS29-211ENST00000553128 DSELQ8IZU8 1212 aa12.65□□□□□ -0.38
VPS29-211ENST00000553128 D2HGDHQ8N465 521 aa12.65□□□□□ -0.38
VPS29-211ENST00000553128 ST6GALNAC3Q8NDV1 305 aa12.65□□□□□ -0.38
VPS29-211ENST00000553128 LPCAT1Q8NF37 534 aa12.65□□□□□ -0.38
VPS29-211ENST00000553128 UBXN4Q92575 508 aa12.65□□□□□ -0.38
VPS29-211ENST00000553128 ZNF501Q96CX3 271 aaPredicted RBP12.65□□□□□ -0.38
VPS29-211ENST00000553128 LURAP1Q96LR2 239 aa12.65□□□□□ -0.38
VPS29-211ENST00000553128 PPM1MQ96MI6 270 aa12.65□□□□□ -0.38
VPS29-211ENST00000553128 EIF3CQ99613 913 aaKnown RBP12.65□□□□□ -0.38
VPS29-211ENST00000553128 TDRD1Q9BXT4 1180 aaKnown RBP12.65□□□□□ -0.38
VPS29-211ENST00000553128 ILKAPQ9H0C8 392 aaPredicted RBP12.65□□□□□ -0.38
VPS29-211ENST00000553128 SAMSN1Q9NSI8 373 aaKnown RBP12.65□□□□□ -0.38
VPS29-211ENST00000553128 TAB2Q9NYJ8 693 aa12.65□□□□□ -0.38
VPS29-211ENST00000553128 TAS2R14Q9NYV8 317 aa12.65□□□□□ -0.38
VPS29-211ENST00000553128 C5AR2Q9P296 337 aa12.65□□□□□ -0.38
VPS29-211ENST00000553128 G3BP2Q9UN86 482 aaKnown RBP12.65□□□□□ -0.38
VPS29-211ENST00000553128 PCDHGA10Q9Y5H3 936 aa12.65□□□□□ -0.38
VPS29-211ENST00000553128 CSAG2Q9Y5P2 127 aa12.65□□□□□ -0.38
VPS29-211ENST00000553128 MTA2O94776 668 aa12.64□□□□□ -0.39
VPS29-211ENST00000553128 RAB40ALP0C0E4 278 aa12.64□□□□□ -0.39
VPS29-211ENST00000553128 TCF4P15884 667 aa12.64□□□□□ -0.39
VPS29-211ENST00000553128 RORAP35398 523 aa12.64□□□□□ -0.39
VPS29-211ENST00000553128 HCAR3P49019 387 aa12.64□□□□□ -0.39
VPS29-211ENST00000553128 TUBB4BP68371 445 aa12.64□□□□□ -0.39
VPS29-211ENST00000553128 ITKQ08881 620 aa12.64□□□□□ -0.39
VPS29-211ENST00000553128 MAMLD1Q13495 774 aa12.64□□□□□ -0.39
VPS29-211ENST00000553128 TUBB2AQ13885 445 aa12.64□□□□□ -0.39
VPS29-211ENST00000553128 LLGL1Q15334 1064 aa12.64□□□□□ -0.39
VPS29-211ENST00000553128 KRTAP21-3Q3LHN1 58 aa12.64□□□□□ -0.39
VPS29-211ENST00000553128 KHDC1Q4VXA5 237 aaKnown RBP12.64□□□□□ -0.39
VPS29-211ENST00000553128 ALS2CLQ60I27 953 aa12.64□□□□□ -0.39
VPS29-211ENST00000553128 SPOCD1Q6ZMY3 1216 aa12.64□□□□□ -0.39
VPS29-211ENST00000553128 KCNMB4Q86W47 210 aa12.64□□□□□ -0.39
VPS29-211ENST00000553128 BPHLQ86WA6 291 aaPredicted RBP12.64□□□□□ -0.39
VPS29-211ENST00000553128 NDUFAF2Q8N183 169 aa12.64□□□□□ -0.39
VPS29-211ENST00000553128 BBS5Q8N3I7 341 aa12.64□□□□□ -0.39
VPS29-211ENST00000553128 ATPAF2Q8N5M1 289 aa12.64□□□□□ -0.39
VPS29-211ENST00000553128 TEX26Q8N6G2 289 aa12.64□□□□□ -0.39
VPS29-211ENST00000553128 CXorf40BQ96DE9 158 aa12.64□□□□□ -0.39
VPS29-211ENST00000553128 LYSMD1Q96S90 227 aa12.64□□□□□ -0.39
VPS29-211ENST00000553128 TUBB2BQ9BVA1 445 aa12.64□□□□□ -0.39
VPS29-211ENST00000553128 NLNQ9BYT8 704 aa12.64□□□□□ -0.39
VPS29-211ENST00000553128 KCND1Q9NSA2 647 aa12.64□□□□□ -0.39
VPS29-211ENST00000553128 MTORP42345 2549 aa12.63□□□□□ -0.39
VPS29-211ENST00000553128 SLC25A14O95258 325 aaPredicted RBP12.63□□□□□ -0.39
VPS29-211ENST00000553128 FECHP22830 423 aa12.63□□□□□ -0.39
VPS29-211ENST00000553128 IL1R2P27930 398 aa12.63□□□□□ -0.39
VPS29-211ENST00000553128 RRADP55042 308 aa12.63□□□□□ -0.39
VPS29-211ENST00000553128 HSD11B2P80365 405 aa12.63□□□□□ -0.39
VPS29-211ENST00000553128 SMTNL2Q2TAL5 461 aa12.63□□□□□ -0.39
VPS29-211ENST00000553128 FAM182AQ5T1J6 154 aa12.63□□□□□ -0.39
VPS29-211ENST00000553128 LYPLAL1Q5VWZ2 237 aa12.63□□□□□ -0.39
VPS29-211ENST00000553128 TMCO3Q6UWJ1 677 aa12.63□□□□□ -0.39
VPS29-211ENST00000553128 IGFL3Q6UXB1 125 aa12.63□□□□□ -0.39
VPS29-211ENST00000553128 Q6ZS92 163 aa12.63□□□□□ -0.39
VPS29-211ENST00000553128 POLNQ7Z5Q5 900 aa12.63□□□□□ -0.39
VPS29-211ENST00000553128 C11orf96Q7Z7L8 435 aa12.63□□□□□ -0.39
VPS29-211ENST00000553128 LRRTM4Q86VH4 590 aa12.63□□□□□ -0.39
VPS29-211ENST00000553128 GPR26Q8NDV2 337 aa12.63□□□□□ -0.39
VPS29-211ENST00000553128 LRRN4Q8WUT4 740 aa12.63□□□□□ -0.39
VPS29-211ENST00000553128 SGSM3Q96HU1 749 aa12.63□□□□□ -0.39
VPS29-211ENST00000553128 PCMTD1Q96MG8 357 aaPredicted RBP12.63□□□□□ -0.39
VPS29-211ENST00000553128 AGPAT1Q99943 283 aa12.63□□□□□ -0.39
VPS29-211ENST00000553128 SPATA16Q9BXB7 569 aa12.63□□□□□ -0.39
VPS29-211ENST00000553128 ZNF552Q9H707 407 aaPredicted RBP12.63□□□□□ -0.39
VPS29-211ENST00000553128 TRIM39Q9HCM9 518 aa12.63□□□□□ -0.39
VPS29-211ENST00000553128 PKD2L2Q9NZM6 624 aa12.63□□□□□ -0.39
VPS29-211ENST00000553128 CCDC168Q8NDH2 2452 aa12.62□□□□□ -0.39
VPS29-211ENST00000553128 PIKFYVEQ9Y2I7 2098 aa12.62□□□□□ -0.39
VPS29-211ENST00000553128 KMOO15229 486 aa12.62□□□□□ -0.39
VPS29-211ENST00000553128 PRPSAP2O60256 369 aa12.62□□□□□ -0.39
VPS29-211ENST00000553128 KLK3P07288 261 aaPredicted RBP12.62□□□□□ -0.39
VPS29-211ENST00000553128 OTX2P32243 289 aa12.62□□□□□ -0.39
VPS29-211ENST00000553128 ARL4DP49703 201 aa12.62□□□□□ -0.39
VPS29-211ENST00000553128 CDH6P55285 790 aa12.62□□□□□ -0.39
VPS29-211ENST00000553128 GSDMDP57764 484 aa12.62□□□□□ -0.39
VPS29-211ENST00000553128 NIPAL4Q0D2K0 466 aa12.62□□□□□ -0.39
VPS29-211ENST00000553128 QPCTQ16769 361 aa12.62□□□□□ -0.39
VPS29-211ENST00000553128 PTCHD3Q3KNS1 767 aa12.62□□□□□ -0.39
VPS29-211ENST00000553128 ZNF569Q5MCW4 686 aa12.62□□□□□ -0.39
VPS29-211ENST00000553128 DNTTIP2Q5QJE6 756 aaKnown RBP12.62□□□□□ -0.39
VPS29-211ENST00000553128 AGAP9Q5VTM2 703 aa12.62□□□□□ -0.39
VPS29-211ENST00000553128 ACAD10Q6JQN1 1059 aa12.62□□□□□ -0.39
VPS29-211ENST00000553128 FJX1Q86VR8 437 aa12.62□□□□□ -0.39
VPS29-211ENST00000553128 TMEM151BQ8IW70 566 aa12.62□□□□□ -0.39
VPS29-211ENST00000553128 RBM12BQ8IXT5 1001 aaKnown RBP12.62□□□□□ -0.39
VPS29-211ENST00000553128 RAVER1Q8IY67 606 aaKnown RBP12.62□□□□□ -0.39
VPS29-211ENST00000553128 MLKLQ8NB16 471 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms