RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 ZDHHC20Q5W0Z9 365 aa12.63□□□□□ -0.39
PTCH1-218ENST00000548945 CCDC70Q6NSX1 233 aa12.63□□□□□ -0.39
PTCH1-218ENST00000548945 C11orf96Q7Z7L8 435 aa12.63□□□□□ -0.39
PTCH1-218ENST00000548945 PPP1R3BQ86XI6 285 aa12.63□□□□□ -0.39
PTCH1-218ENST00000548945 RASGRP3Q8IV61 690 aa12.63□□□□□ -0.39
PTCH1-218ENST00000548945 GALNT6Q8NCL4 622 aa12.63□□□□□ -0.39
PTCH1-218ENST00000548945 BRSK1Q8TDC3 778 aa12.63□□□□□ -0.39
PTCH1-218ENST00000548945 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.63□□□□□ -0.39
PTCH1-218ENST00000548945 CPLX3Q8WVH0 158 aa12.63□□□□□ -0.39
PTCH1-218ENST00000548945 SEC14L1Q92503 715 aa12.63□□□□□ -0.39
PTCH1-218ENST00000548945 CXorf40BQ96DE9 158 aa12.63□□□□□ -0.39
PTCH1-218ENST00000548945 FCRL4Q96PJ5 515 aa12.63□□□□□ -0.39
PTCH1-218ENST00000548945 CBX8Q9HC52 389 aa12.63□□□□□ -0.39
PTCH1-218ENST00000548945 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.63□□□□□ -0.39
PTCH1-218ENST00000548945 PADI1Q9ULC6 663 aa12.63□□□□□ -0.39
PTCH1-218ENST00000548945 TP53TG5Q9Y2B4 290 aa12.63□□□□□ -0.39
PTCH1-218ENST00000548945 DNAJC16Q9Y2G8 782 aa12.63□□□□□ -0.39
PTCH1-218ENST00000548945 MRPS18BQ9Y676 258 aaKnown RBP12.63□□□□□ -0.39
PTCH1-218ENST00000548945 SPTBP11277 2137 aa12.62□□□□□ -0.39
PTCH1-218ENST00000548945 C3orf70A6NLC5 250 aaPredicted RBP12.62□□□□□ -0.39
PTCH1-218ENST00000548945 C21orf140B9A014 251 aa12.62□□□□□ -0.39
PTCH1-218ENST00000548945 APOL1O14791 398 aa12.62□□□□□ -0.39
PTCH1-218ENST00000548945 SPAG6O75602 509 aa12.62□□□□□ -0.39
PTCH1-218ENST00000548945 RFPL1O75677 317 aa12.62□□□□□ -0.39
PTCH1-218ENST00000548945 TMEM253P0C7T8 217 aa12.62□□□□□ -0.39
PTCH1-218ENST00000548945 GP1BBP13224 206 aa12.62□□□□□ -0.39
PTCH1-218ENST00000548945 RPL10P27635 214 aaKnown RBP12.62□□□□□ -0.39
PTCH1-218ENST00000548945 HMGCLP35914 325 aa12.62□□□□□ -0.39
PTCH1-218ENST00000548945 ARHGAP25P42331 645 aa12.62□□□□□ -0.39
PTCH1-218ENST00000548945 SEPHS1P49903 392 aa12.62□□□□□ -0.39
PTCH1-218ENST00000548945 PMS2P54278 862 aa12.62□□□□□ -0.39
PTCH1-218ENST00000548945 DMPKQ09013 629 aa12.62□□□□□ -0.39
PTCH1-218ENST00000548945 SEPT7Q16181 437 aaKnown RBP12.62□□□□□ -0.39
PTCH1-218ENST00000548945 PLA2G4EQ3MJ16 856 aa12.62□□□□□ -0.39
PTCH1-218ENST00000548945 TEX44Q53QW1 395 aa12.62□□□□□ -0.39
PTCH1-218ENST00000548945 LRRC38Q5VT99 294 aa12.62□□□□□ -0.39
PTCH1-218ENST00000548945 CACHD1Q5VU97 1274 aa12.62□□□□□ -0.39
PTCH1-218ENST00000548945 KLHL35Q6PF15 583 aa12.62□□□□□ -0.39
PTCH1-218ENST00000548945 BPHLQ86WA6 291 aaPredicted RBP12.62□□□□□ -0.39
PTCH1-218ENST00000548945 APLFQ8IW19 511 aaPredicted RBP12.62□□□□□ -0.39
PTCH1-218ENST00000548945 UBXN4Q92575 508 aa12.62□□□□□ -0.39
PTCH1-218ENST00000548945 RSC1A1Q92681 617 aa12.62□□□□□ -0.39
PTCH1-218ENST00000548945 MIB2Q96AX9 1013 aa12.62□□□□□ -0.39
PTCH1-218ENST00000548945 SLC41A2Q96JW4 573 aa12.62□□□□□ -0.39
PTCH1-218ENST00000548945 AGAP3Q96P47 875 aa12.62□□□□□ -0.39
PTCH1-218ENST00000548945 MAK16Q9BXY0 300 aaKnown RBP12.62□□□□□ -0.39
PTCH1-218ENST00000548945 ZCCHC2Q9C0B9 1178 aaKnown RBP12.62□□□□□ -0.39
PTCH1-218ENST00000548945 TRABDQ9H4I3 376 aa12.62□□□□□ -0.39
PTCH1-218ENST00000548945 GLOD4Q9HC38 313 aa12.62□□□□□ -0.39
PTCH1-218ENST00000548945 PDE7BQ9NP56 450 aa12.62□□□□□ -0.39
PTCH1-218ENST00000548945 ESPL1Q14674 2120 aa12.62□□□□□ -0.39
PTCH1-218ENST00000548945 ITPR2Q14571 2701 aa12.61□□□□□ -0.39
PTCH1-218ENST00000548945 A0A0A6YYK5 440 aaPredicted RBP12.61□□□□□ -0.39
PTCH1-218ENST00000548945 OR52A4PA6NMU1 304 aa12.61□□□□□ -0.39
PTCH1-218ENST00000548945 KIF1CO43896 1103 aaKnown RBP12.61□□□□□ -0.39
PTCH1-218ENST00000548945 MTX2O75431 263 aa12.61□□□□□ -0.39
PTCH1-218ENST00000548945 CREG1O75629 220 aa12.61□□□□□ -0.39
PTCH1-218ENST00000548945 EPOP01588 193 aa12.61□□□□□ -0.39
PTCH1-218ENST00000548945 SLC4A1P02730 911 aa12.61□□□□□ -0.39
PTCH1-218ENST00000548945 FECHP22830 423 aa12.61□□□□□ -0.39
PTCH1-218ENST00000548945 CASP14P31944 242 aa12.61□□□□□ -0.39
PTCH1-218ENST00000548945 HALP42357 657 aa12.61□□□□□ -0.39
PTCH1-218ENST00000548945 TMEM115Q12893 351 aaPredicted RBP12.61□□□□□ -0.39
PTCH1-218ENST00000548945 DNASE1L3Q13609 305 aa12.61□□□□□ -0.39
PTCH1-218ENST00000548945 GTF2H3Q13889 308 aa12.61□□□□□ -0.39
PTCH1-218ENST00000548945 ERV3-1Q14264 604 aa12.61□□□□□ -0.39
PTCH1-218ENST00000548945 MESDQ14696 234 aa12.61□□□□□ -0.39
PTCH1-218ENST00000548945 PCSK7Q16549 785 aa12.61□□□□□ -0.39
PTCH1-218ENST00000548945 ASTE1Q2TB18 679 aaPredicted RBP12.61□□□□□ -0.39
PTCH1-218ENST00000548945 ATP13A5Q4VNC0 1218 aa12.61□□□□□ -0.39
PTCH1-218ENST00000548945 KHDC1Q4VXA5 237 aaKnown RBP12.61□□□□□ -0.39
PTCH1-218ENST00000548945 BZW1Q7L1Q6 419 aaKnown RBP12.61□□□□□ -0.39
PTCH1-218ENST00000548945 LUZP1Q86V48 1076 aa12.61□□□□□ -0.39
PTCH1-218ENST00000548945 KMT5CQ86Y97 462 aa12.61□□□□□ -0.39
PTCH1-218ENST00000548945 TRAPPC5Q8IUR0 188 aa12.61□□□□□ -0.39
PTCH1-218ENST00000548945 FAM26EQ8N5C1 309 aa12.61□□□□□ -0.39
PTCH1-218ENST00000548945 TEX19Q8NA77 164 aa12.61□□□□□ -0.39
PTCH1-218ENST00000548945 CD180Q99467 661 aa12.61□□□□□ -0.39
PTCH1-218ENST00000548945 PACSIN1Q9BY11 444 aa12.61□□□□□ -0.39
PTCH1-218ENST00000548945 CEP41Q9BYV8 373 aa12.61□□□□□ -0.39
PTCH1-218ENST00000548945 LHX9Q9NQ69 397 aa12.61□□□□□ -0.39
PTCH1-218ENST00000548945 LNPEPQ9UIQ6 1025 aa12.61□□□□□ -0.39
PTCH1-218ENST00000548945 TMPRSS11EQ9UL52 423 aa12.61□□□□□ -0.39
PTCH1-218ENST00000548945 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.61□□□□□ -0.39
PTCH1-218ENST00000548945 DNMT3AQ9Y6K1 912 aaPredicted RBP12.61□□□□□ -0.39
PTCH1-218ENST00000548945 HIVEP3Q5T1R4 2406 aa12.61□□□□□ -0.39
PTCH1-218ENST00000548945 SSU72P8A0A1W2PR75 194 aa12.6□□□□□ -0.39
PTCH1-218ENST00000548945 AURKAO14965 403 aa12.6□□□□□ -0.39
PTCH1-218ENST00000548945 KATNA1O75449 491 aa12.6□□□□□ -0.39
PTCH1-218ENST00000548945 MT-CYBP00156 380 aaPredicted RBP12.6□□□□□ -0.39
PTCH1-218ENST00000548945 FURINP09958 794 aa12.6□□□□□ -0.39
PTCH1-218ENST00000548945 NR2C2P49116 596 aa12.6□□□□□ -0.39
PTCH1-218ENST00000548945 DRG2P55039 364 aaKnown RBP12.6□□□□□ -0.39
PTCH1-218ENST00000548945 LDLRAP1Q5SW96 308 aa12.6□□□□□ -0.39
PTCH1-218ENST00000548945 IRGCQ6NXR0 463 aa12.6□□□□□ -0.39
PTCH1-218ENST00000548945 FAM92BQ6ZTR7 304 aa12.6□□□□□ -0.39
PTCH1-218ENST00000548945 ASB18Q6ZVZ8 466 aa12.6□□□□□ -0.39
PTCH1-218ENST00000548945 AMZ2Q86W34 360 aa12.6□□□□□ -0.39
PTCH1-218ENST00000548945 ATCAYQ86WG3 371 aa12.6□□□□□ -0.39
PTCH1-218ENST00000548945 GAS2L3Q86XJ1 694 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms