RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 H3BNH8 94 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 AP3D1O14617 1153 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 UGT2B17O75795 530 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 AP2A1O95782 977 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 VIPP01282 170 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 CREB1P16220 341 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 NOS3P29474 1203 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 FMO4P31512 558 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 PTSQ03393 145 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 PYDC2Q56P42 97 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 CNSTQ6PJW8 725 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 PAQR7Q86WK9 346 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 XYLT1Q86Y38 959 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 SIX5Q8N196 739 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 PTGR2Q8N8N7 351 aaPredicted RBP7.75□□□□□ -1.17
VPS13D-211ENST00000543710 TSPEARQ8WU66 669 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 OVCA2Q8WZ82 227 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 CLP1Q92989 425 aaKnown RBP7.75□□□□□ -1.17
VPS13D-211ENST00000543710 TPD52L3Q96J77 140 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 INPP4AQ96PE3 977 aaPredicted RBP7.75□□□□□ -1.17
VPS13D-211ENST00000543710 DENND2DQ9H6A0 471 aaPredicted RBP7.75□□□□□ -1.17
VPS13D-211ENST00000543710 FBRSQ9HAH7 460 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 AP4B1Q9Y6B7 739 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 FAM170AA1A519 330 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 WTIPA6NIX2 430 aaPredicted RBP7.75□□□□□ -1.17
VPS13D-211ENST00000543710 FGF18O76093 207 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 PROCP04070 461 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 ALPIP09923 528 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 CDH1P12830 882 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 GNAZP19086 355 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 AMPD1P23109 780 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 PSMB4P28070 264 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 RPS15P62841 145 aaKnown RBP7.75□□□□□ -1.17
VPS13D-211ENST00000543710 PRKD1Q15139 912 aaPredicted RBP7.75□□□□□ -1.17
VPS13D-211ENST00000543710 TAF1AQ15573 450 aaPredicted RBP7.75□□□□□ -1.17
VPS13D-211ENST00000543710 CNPY1Q3B7I2 92 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 PIGWQ7Z7B1 504 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 CPSF7Q8N684 471 aaKnown RBP7.75□□□□□ -1.17
VPS13D-211ENST00000543710 TEX19Q8NA77 164 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 CHTF18Q8WVB6 975 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 RERGQ96A58 199 aaPredicted RBP7.75□□□□□ -1.17
VPS13D-211ENST00000543710 MED8Q96G25 268 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 FAM84AQ96KN4 292 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 BTN2A3PQ96KV6 586 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 TTLL2Q9BWV7 592 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 CLIC5Q9NZA1 410 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 TMEM9Q9P0T7 183 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 PITPNM1O00562 1244 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 GFRA3O60609 400 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 LYPLA1O75608 230 aaPredicted RBP7.75□□□□□ -1.17
VPS13D-211ENST00000543710 ZCCHC18P0CG32 403 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 GSTM3P21266 225 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 NUDT1P36639 197 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 LIMK2P53671 638 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 SEC13P55735 322 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 IFI35P80217 286 aaPredicted RBP7.75□□□□□ -1.17
VPS13D-211ENST00000543710 LDLRAP1Q5SW96 308 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 WDR59Q6PJI9 974 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 LBX2Q6XYB7 198 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 CDH24Q86UP0 819 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 VSIG10LQ86VR7 867 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 CPNE9Q8IYJ1 553 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 GALNT15Q8N3T1 639 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 ZNF540Q8NDQ6 660 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 UTP15Q8TED0 518 aaKnown RBP7.75□□□□□ -1.17
VPS13D-211ENST00000543710 FAM3CQ92520 227 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 TMEM125Q96AQ2 219 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 SPATA17Q96L03 361 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 SNRNP25Q9BV90 132 aaKnown RBP7.75□□□□□ -1.17
VPS13D-211ENST00000543710 LDHAL6BQ9BYZ2 381 aaPredicted RBP7.75□□□□□ -1.17
VPS13D-211ENST00000543710 WDR37Q9Y2I8 494 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 SIGLEC1Q9BZZ2 1709 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 NCF1BA6NI72 391 aaPredicted RBP7.75□□□□□ -1.17
VPS13D-211ENST00000543710 FAM170BA6NMN3 283 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 NCF1CA8MVU1 366 aaPredicted RBP7.75□□□□□ -1.17
VPS13D-211ENST00000543710 DFNA5O60443 496 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 NCF1P14598 390 aaPredicted RBP7.75□□□□□ -1.17
VPS13D-211ENST00000543710 RCVRNP35243 200 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 SCNN1GP51170 649 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 AP1S1P61966 158 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 HSF2Q03933 536 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 BMPR2Q13873 1038 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 GALNT3Q14435 633 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 LPIN1Q14693 890 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 ZACNQ401N2 412 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 CAPN13Q6MZZ7 669 aaPredicted RBP7.75□□□□□ -1.17
VPS13D-211ENST00000543710 LRRC70Q7Z2Q7 622 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 GPR180Q86V85 440 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 RAB43Q86YS6 212 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 PHYKPLQ8IUZ5 450 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 PRELID2Q8N945 189 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 SMPD3Q9NY59 655 aaPredicted RBP7.75□□□□□ -1.17
VPS13D-211ENST00000543710 TRPC4Q9UBN4 977 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 DHRS7Q9Y394 339 aa7.75□□□□□ -1.17
VPS13D-211ENST00000543710 OAS3Q9Y6K5 1087 aaKnown RBP7.75□□□□□ -1.17
VPS13D-211ENST00000543710 BTN3A3O00478 584 aa7.74□□□□□ -1.17
VPS13D-211ENST00000543710 DNAJB6O75190 326 aa7.74□□□□□ -1.17
VPS13D-211ENST00000543710 NOVA1P51513 510 aaKnown RBP7.74□□□□□ -1.17
VPS13D-211ENST00000543710 CCNHP51946 323 aaPredicted RBP7.74□□□□□ -1.17
VPS13D-211ENST00000543710 SLC16A1P53985 500 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms