RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 ASIC4Q96FT7 647 aa16.12■□□□□ 0.17
COL4A1-204ENST00000543140 LMLNQ96KR4 655 aa16.12■□□□□ 0.17
COL4A1-204ENST00000543140 KLHL32Q96NJ5 620 aa16.12■□□□□ 0.17
COL4A1-204ENST00000543140 C1QTNF3Q9BXJ4 246 aa16.12■□□□□ 0.17
COL4A1-204ENST00000543140 KLHL4Q9C0H6 718 aa16.12■□□□□ 0.17
COL4A1-204ENST00000543140 LINC00597Q9H2U6 94 aa16.12■□□□□ 0.17
COL4A1-204ENST00000543140 EBF3Q9H4W6 596 aa16.12■□□□□ 0.17
COL4A1-204ENST00000543140 NOL11Q9H8H0 719 aaKnown RBP16.12■□□□□ 0.17
COL4A1-204ENST00000543140 IL23AQ9NPF7 189 aa16.12■□□□□ 0.17
COL4A1-204ENST00000543140 GNPTGQ9UJJ9 305 aa16.12■□□□□ 0.17
COL4A1-204ENST00000543140 PRORSD1PA6NEY8 169 aa16.12■□□□□ 0.17
COL4A1-204ENST00000543140 AQP4P55087 323 aa16.12■□□□□ 0.17
COL4A1-204ENST00000543140 GRAMD1BQ3KR37 738 aa16.12■□□□□ 0.17
COL4A1-204ENST00000543140 LRRC66Q68CR7 880 aa16.12■□□□□ 0.17
COL4A1-204ENST00000543140 C22orf39Q6P5X5 142 aa16.12■□□□□ 0.17
COL4A1-204ENST00000543140 PQLC1Q8N2U9 271 aa16.12■□□□□ 0.17
COL4A1-204ENST00000543140 GRIN3AQ8TCU5 1115 aa16.12■□□□□ 0.17
COL4A1-204ENST00000543140 HBEGFQ99075 208 aa16.12■□□□□ 0.17
COL4A1-204ENST00000543140 APOL5Q9BWW9 433 aa16.12■□□□□ 0.17
COL4A1-204ENST00000543140 BBS2Q9BXC9 721 aa16.12■□□□□ 0.17
COL4A1-204ENST00000543140 NSUN3Q9H649 340 aaKnown RBP16.12■□□□□ 0.17
COL4A1-204ENST00000543140 SPAG4Q9NPE6 437 aa16.12■□□□□ 0.17
COL4A1-204ENST00000543140 GMPR2Q9P2T1 348 aaKnown RBP16.12■□□□□ 0.17
COL4A1-204ENST00000543140 CROTQ9UKG9 612 aa16.12■□□□□ 0.17
COL4A1-204ENST00000543140 PSMD13Q9UNM6 376 aa16.12■□□□□ 0.17
COL4A1-204ENST00000543140 UGT2B4P06133 528 aa16.11■□□□□ 0.17
COL4A1-204ENST00000543140 UROSP10746 265 aa16.11■□□□□ 0.17
COL4A1-204ENST00000543140 CAPN3P20807 821 aa16.11■□□□□ 0.17
COL4A1-204ENST00000543140 SPAM1P38567 509 aa16.11■□□□□ 0.17
COL4A1-204ENST00000543140 IRGCQ6NXR0 463 aa16.11■□□□□ 0.17
COL4A1-204ENST00000543140 DPY19L3Q6ZPD9 716 aa16.11■□□□□ 0.17
COL4A1-204ENST00000543140 ADGRG2Q8IZP9 1017 aa16.11■□□□□ 0.17
COL4A1-204ENST00000543140 OR2T11Q8NH01 316 aa16.11■□□□□ 0.17
COL4A1-204ENST00000543140 C1orf50Q9BV19 199 aa16.11■□□□□ 0.17
COL4A1-204ENST00000543140 EMILIN2Q9BXX0 1053 aa16.11■□□□□ 0.17
COL4A1-204ENST00000543140 COPS7BQ9H9Q2 264 aaPredicted RBP16.11■□□□□ 0.17
COL4A1-204ENST00000543140 MTCL1Q9Y4B5 1905 aaKnown RBP16.11■□□□□ 0.17
COL4A1-204ENST00000543140 TRIM24O15164 1050 aa16.11■□□□□ 0.17
COL4A1-204ENST00000543140 DNAJA2O60884 412 aa16.11■□□□□ 0.17
COL4A1-204ENST00000543140 KATNA1O75449 491 aa16.11■□□□□ 0.17
COL4A1-204ENST00000543140 CHEK2O96017 543 aa16.11■□□□□ 0.17
COL4A1-204ENST00000543140 UBTFL6P0CB48 400 aaPredicted RBP16.11■□□□□ 0.17
COL4A1-204ENST00000543140 CCNHP51946 323 aaPredicted RBP16.11■□□□□ 0.17
COL4A1-204ENST00000543140 ERVPABLB-1P60509 514 aa16.11■□□□□ 0.17
COL4A1-204ENST00000543140 HTRA4P83105 476 aaPredicted RBP16.11■□□□□ 0.17
COL4A1-204ENST00000543140 SLC5A9Q2M3M2 681 aa16.11■□□□□ 0.17
COL4A1-204ENST00000543140 LETMD1Q6P1Q0 360 aa16.11■□□□□ 0.17
COL4A1-204ENST00000543140 TMEM154Q6P9G4 183 aa16.11■□□□□ 0.17
COL4A1-204ENST00000543140 PDSS2Q86YH6 399 aa16.11■□□□□ 0.17
COL4A1-204ENST00000543140 CLP1Q92989 425 aaKnown RBP16.11■□□□□ 0.17
COL4A1-204ENST00000543140 SUV39H2Q9H5I1 410 aa16.11■□□□□ 0.17
COL4A1-204ENST00000543140 NUDT4Q9NZJ9 180 aa16.11■□□□□ 0.17
COL4A1-204ENST00000543140 HS3ST2Q9Y278 367 aa16.11■□□□□ 0.17
COL4A1-204ENST00000543140 INSL6Q9Y581 213 aa16.11■□□□□ 0.17
COL4A1-204ENST00000543140 FFAR2O15552 330 aa16.1■□□□□ 0.17
COL4A1-204ENST00000543140 SLC7A2P52569 658 aa16.1■□□□□ 0.17
COL4A1-204ENST00000543140 NTHL1P78549 312 aa16.1■□□□□ 0.17
COL4A1-204ENST00000543140 TRIM25Q14258 630 aaKnown RBP16.1■□□□□ 0.17
COL4A1-204ENST00000543140 GRAMD4Q6IC98 578 aa16.1■□□□□ 0.17
COL4A1-204ENST00000543140 Q6ZVU0 165 aa16.1■□□□□ 0.17
COL4A1-204ENST00000543140 SPRED2Q7Z698 418 aa16.1■□□□□ 0.17
COL4A1-204ENST00000543140 ADAMTSL2Q86TH1 951 aa16.1■□□□□ 0.17
COL4A1-204ENST00000543140 CHST14Q8NCH0 376 aa16.1■□□□□ 0.17
COL4A1-204ENST00000543140 PDLIM5Q96HC4 596 aaKnown RBP16.1■□□□□ 0.17
COL4A1-204ENST00000543140 TEX37Q96LM6 180 aa16.1■□□□□ 0.17
COL4A1-204ENST00000543140 SDR39U1Q9NRG7 319 aaPredicted RBP16.1■□□□□ 0.17
COL4A1-204ENST00000543140 MAP10Q9P2G4 905 aa16.1■□□□□ 0.17
COL4A1-204ENST00000543140 BCAP29Q9UHQ4 241 aa16.1■□□□□ 0.17
COL4A1-204ENST00000543140 SARDHQ9UL12 918 aa16.1■□□□□ 0.17
COL4A1-204ENST00000543140 HCFC2Q9Y5Z7 792 aa16.1■□□□□ 0.17
COL4A1-204ENST00000543140 ZNF106Q9H2Y7 1883 aaKnown RBP16.1■□□□□ 0.17
COL4A1-204ENST00000543140 TRBV5-4A0A0C4DH59 114 aa16.1■□□□□ 0.17
COL4A1-204ENST00000543140 SMNDC1O75940 238 aaKnown RBP eCLIP16.1■□□□□ 0.17
COL4A1-204ENST00000543140 FGBP02675 491 aa16.1■□□□□ 0.17
COL4A1-204ENST00000543140 LHCGRP22888 699 aa16.1■□□□□ 0.17
COL4A1-204ENST00000543140 RPS3P23396 243 aaKnown RBP eCLIP16.1■□□□□ 0.17
COL4A1-204ENST00000543140 CTNNB1P35222 781 aa16.1■□□□□ 0.17
COL4A1-204ENST00000543140 HSPA7P48741 367 aa16.1■□□□□ 0.17
COL4A1-204ENST00000543140 PTSQ03393 145 aa16.1■□□□□ 0.17
COL4A1-204ENST00000543140 PHKG1Q16816 387 aa16.1■□□□□ 0.17
COL4A1-204ENST00000543140 ZNF697Q5TEC3 545 aa16.1■□□□□ 0.17
COL4A1-204ENST00000543140 CYP2R1Q6VVX0 501 aa16.1■□□□□ 0.17
COL4A1-204ENST00000543140 METTL3Q86U44 580 aaKnown RBP16.1■□□□□ 0.17
COL4A1-204ENST00000543140 MYO1HQ8N1T3 1032 aa16.1■□□□□ 0.17
COL4A1-204ENST00000543140 NXPE1Q8N323 547 aa16.1■□□□□ 0.17
COL4A1-204ENST00000543140 NAT16Q8N8M0 369 aa16.1■□□□□ 0.17
COL4A1-204ENST00000543140 MRPL43Q8N983 215 aaKnown RBP16.1■□□□□ 0.17
COL4A1-204ENST00000543140 ATP6V1E2Q96A05 226 aa16.1■□□□□ 0.17
COL4A1-204ENST00000543140 ASB9Q96DX5 294 aa16.1■□□□□ 0.17
COL4A1-204ENST00000543140 SCRN2Q96FV2 425 aa16.1■□□□□ 0.17
COL4A1-204ENST00000543140 TDP1Q9NUW8 608 aa16.1■□□□□ 0.17
COL4A1-204ENST00000543140 CDH23Q9H251 3354 aa16.1■□□□□ 0.17
COL4A1-204ENST00000543140 ANGPT2O15123 496 aa16.09■□□□□ 0.17
COL4A1-204ENST00000543140 MOSPD3O75425 235 aa16.09■□□□□ 0.17
COL4A1-204ENST00000543140 S100BP04271 92 aaPredicted RBP16.09■□□□□ 0.17
COL4A1-204ENST00000543140 IDO1P14902 403 aa16.09■□□□□ 0.17
COL4A1-204ENST00000543140 WEE1P30291 646 aa16.09■□□□□ 0.17
COL4A1-204ENST00000543140 GDF5P43026 501 aa16.09■□□□□ 0.17
COL4A1-204ENST00000543140 RGS4P49798 205 aa16.09■□□□□ 0.17
COL4A1-204ENST00000543140 YBX1P67809 324 aaKnown RBP16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms