RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 WBP2Q969T9 261 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 VWCEQ96DN2 955 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 DCUN1D1Q96GG9 259 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 EXOC2Q96KP1 924 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 MARK4Q96L34 752 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 MAGEB10Q96LZ2 347 aaPredicted RBP9.76□□□□□ -0.85
SS18-205ENST00000542420 HGH1Q9BTY7 390 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 ZNF334Q9HCZ1 680 aaPredicted RBP9.76□□□□□ -0.85
SS18-205ENST00000542420 SLC52A3Q9NQ40 469 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 ACSS2Q9NR19 701 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 HEBP1Q9NRV9 189 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 ADA2Q9NZK5 511 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 CCDC167Q9P0B6 97 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 ATXN10Q9UBB4 475 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 PADI4Q9UM07 663 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 FAM50BQ9Y247 325 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 PCDHB9Q9Y5E1 797 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 ACTL7AQ9Y615 435 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 PLXNA2O75051 1894 aa9.75□□□□□ -0.85
SS18-205ENST00000542420 CDC7O00311 574 aa9.75□□□□□ -0.85
SS18-205ENST00000542420 SORBS2O94875 1100 aaKnown RBP9.75□□□□□ -0.85
SS18-205ENST00000542420 SIX3O95343 332 aaPredicted RBP9.75□□□□□ -0.85
SS18-205ENST00000542420 CYBBP04839 570 aa9.75□□□□□ -0.85
SS18-205ENST00000542420 CLTBP09497 229 aa9.75□□□□□ -0.85
SS18-205ENST00000542420 C7P10643 843 aa9.75□□□□□ -0.85
SS18-205ENST00000542420 UMPSP11172 480 aa9.75□□□□□ -0.85
SS18-205ENST00000542420 SPAM1P38567 509 aa9.75□□□□□ -0.85
SS18-205ENST00000542420 MNX1P50219 401 aaPredicted RBP9.75□□□□□ -0.85
SS18-205ENST00000542420 CDH13P55290 713 aa9.75□□□□□ -0.85
SS18-205ENST00000542420 POLE2P56282 527 aa9.75□□□□□ -0.85
SS18-205ENST00000542420 EEFSECP57772 596 aaKnown RBP9.75□□□□□ -0.85
SS18-205ENST00000542420 CDKL1Q00532 357 aa9.75□□□□□ -0.85
SS18-205ENST00000542420 SFSWAPQ12872 951 aaKnown RBP9.75□□□□□ -0.85
SS18-205ENST00000542420 MAD2L1Q13257 205 aaPredicted RBP9.75□□□□□ -0.85
SS18-205ENST00000542420 TGFBIQ15582 683 aa9.75□□□□□ -0.85
SS18-205ENST00000542420 FXNQ16595 210 aa9.75□□□□□ -0.85
SS18-205ENST00000542420 GEN1Q17RS7 908 aa9.75□□□□□ -0.85
SS18-205ENST00000542420 TRIM60Q495X7 471 aa9.75□□□□□ -0.85
SS18-205ENST00000542420 SULT1C3Q6IMI6 304 aa9.75□□□□□ -0.85
SS18-205ENST00000542420 FKBP9P1Q75LS8 142 aa9.75□□□□□ -0.85
SS18-205ENST00000542420 DEFB128Q7Z7B8 93 aa9.75□□□□□ -0.85
SS18-205ENST00000542420 PTRH1Q86Y79 214 aaKnown RBP9.75□□□□□ -0.85
SS18-205ENST00000542420 MYO1HQ8N1T3 1032 aa9.75□□□□□ -0.85
SS18-205ENST00000542420 TUBGCP3Q96CW5 907 aa9.75□□□□□ -0.85
SS18-205ENST00000542420 ECHDC3Q96DC8 303 aa9.75□□□□□ -0.85
SS18-205ENST00000542420 LMLNQ96KR4 655 aa9.75□□□□□ -0.85
SS18-205ENST00000542420 C3orf30Q96M34 536 aa9.75□□□□□ -0.85
SS18-205ENST00000542420 ZNF641Q96N77 438 aaPredicted RBP9.75□□□□□ -0.85
SS18-205ENST00000542420 FAM126AQ9BYI3 521 aaPredicted RBP9.75□□□□□ -0.85
SS18-205ENST00000542420 TUBB1Q9H4B7 451 aa9.75□□□□□ -0.85
SS18-205ENST00000542420 EBF3Q9H4W6 596 aa9.75□□□□□ -0.85
SS18-205ENST00000542420 GALNT8Q9NY28 637 aa9.75□□□□□ -0.85
SS18-205ENST00000542420 ASIC5Q9NY37 505 aa9.75□□□□□ -0.85
SS18-205ENST00000542420 DLGAP2Q9P1A6 1054 aa9.75□□□□□ -0.85
SS18-205ENST00000542420 LEF1Q9UJU2 399 aaPredicted RBP9.75□□□□□ -0.85
SS18-205ENST00000542420 HS3ST2Q9Y278 367 aa9.75□□□□□ -0.85
SS18-205ENST00000542420 FIS1Q9Y3D6 152 aa9.75□□□□□ -0.85
SS18-205ENST00000542420 AP4S1Q9Y587 144 aa9.75□□□□□ -0.85
SS18-205ENST00000542420 PIKFYVEQ9Y2I7 2098 aa9.75□□□□□ -0.85
SS18-205ENST00000542420 FAM234BA2RU67 622 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 ARNTLO00327 626 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 NIPSNAP2O75323 286 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 OTCP00480 354 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 ENO2P09104 434 aaPredicted RBP9.74□□□□□ -0.85
SS18-205ENST00000542420 HGFP14210 728 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 HOXB6P17509 224 aaKnown RBP9.74□□□□□ -0.85
SS18-205ENST00000542420 CHRM3P20309 590 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 ACRV1P26436 265 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 MRPS22P82650 360 aaKnown RBP9.74□□□□□ -0.85
SS18-205ENST00000542420 EMX2Q04743 252 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 NFATC2Q13469 925 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 RPS6KA2Q15349 733 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 PLEKHG6Q3KR16 790 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 LILRA6Q6PI73 481 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 PAOXQ6QHF9 649 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 SYVN1Q86TM6 617 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 RAVER1Q8IY67 606 aaKnown RBP9.74□□□□□ -0.85
SS18-205ENST00000542420 TCAIMQ8N3R3 496 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 DPP10Q8N608 796 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 PCDH20Q8N6Y1 951 aaKnown RBP9.74□□□□□ -0.85
SS18-205ENST00000542420 SIDT2Q8NBJ9 832 aaKnown RBP9.74□□□□□ -0.85
SS18-205ENST00000542420 LEMD2Q8NC56 503 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 OR2AP1Q8NGE2 309 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 OR2T34Q8NGX1 318 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 OR2T3Q8NH03 318 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 EEF1AKMT1Q8WVE0 214 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 UCMAQ8WVF2 138 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 MCCC1Q96RQ3 725 aaPredicted RBP9.74□□□□□ -0.85
SS18-205ENST00000542420 ZBED2Q9BTP6 218 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 RAD18Q9NS91 495 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 CD274Q9NZQ7 290 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 ACTR3BQ9P1U1 418 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 NFKBIL1Q9UBC1 381 aaPredicted RBP9.74□□□□□ -0.85
SS18-205ENST00000542420 PTBP2Q9UKA9 531 aaKnown RBP9.74□□□□□ -0.85
SS18-205ENST00000542420 IRAK3Q9Y616 596 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 NUP210Q8TEM1 1887 aaPredicted RBP9.74□□□□□ -0.85
SS18-205ENST00000542420 GAPDHSO14556 408 aaPredicted RBP9.74□□□□□ -0.85
SS18-205ENST00000542420 LRG1P02750 347 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 GPIP06744 558 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 FCGR1AP12314 374 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms