RNA–Protein interactions for RNA: ENST00000540906.1

AP003559.1-201, humanhuman

TSL 3 BASIC

Gene AP003559.1, Length 1,831 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP003559.1-201ENST00000540906 K7EQS6 105 aa12.11□□□□□ -0.47
AP003559.1-201ENST00000540906 AREL1O15033 823 aa12.11□□□□□ -0.47
AP003559.1-201ENST00000540906 SMIM24O75264 130 aa12.11□□□□□ -0.47
AP003559.1-201ENST00000540906 SUPT7LO94864 414 aa12.11□□□□□ -0.47
AP003559.1-201ENST00000540906 SOD1P00441 154 aa12.11□□□□□ -0.47
AP003559.1-201ENST00000540906 PRNPP04156 253 aa12.11□□□□□ -0.47
AP003559.1-201ENST00000540906 EPHX1P07099 455 aa12.11□□□□□ -0.47
AP003559.1-201ENST00000540906 TPBGLP0DKB5 382 aa12.11□□□□□ -0.47
AP003559.1-201ENST00000540906 XPAP23025 273 aaPredicted RBP12.11□□□□□ -0.47
AP003559.1-201ENST00000540906 ITGB7P26010 798 aa12.11□□□□□ -0.47
AP003559.1-201ENST00000540906 EPHA3P29320 983 aa12.11□□□□□ -0.47
AP003559.1-201ENST00000540906 EEF1DP29692 281 aaKnown RBP12.11□□□□□ -0.47
AP003559.1-201ENST00000540906 CCR7P32248 378 aa12.11□□□□□ -0.47
AP003559.1-201ENST00000540906 GRIA2P42262 883 aa12.11□□□□□ -0.47
AP003559.1-201ENST00000540906 ARHGAP8P85298 464 aa12.11□□□□□ -0.47
AP003559.1-201ENST00000540906 LYPLAL1Q5VWZ2 237 aa12.11□□□□□ -0.47
AP003559.1-201ENST00000540906 CYHR1Q6ZMK1 362 aa12.11□□□□□ -0.47
AP003559.1-201ENST00000540906 SLC22A9Q8IVM8 553 aa12.11□□□□□ -0.47
AP003559.1-201ENST00000540906 C10orf67Q8IYJ2 551 aa12.11□□□□□ -0.47
AP003559.1-201ENST00000540906 BEND7Q8N7W2 519 aaPredicted RBP12.11□□□□□ -0.47
AP003559.1-201ENST00000540906 GBP7Q8N8V2 638 aaPredicted RBP12.11□□□□□ -0.47
AP003559.1-201ENST00000540906 SMRP1Q8NCR6 262 aa12.11□□□□□ -0.47
AP003559.1-201ENST00000540906 FBXO27Q8NI29 283 aa12.11□□□□□ -0.47
AP003559.1-201ENST00000540906 STAG3L4Q8TBR4 150 aa12.11□□□□□ -0.47
AP003559.1-201ENST00000540906 HCAR2Q8TDS4 363 aa12.11□□□□□ -0.47
AP003559.1-201ENST00000540906 UTP4Q969X6 686 aaKnown RBP12.11□□□□□ -0.47
AP003559.1-201ENST00000540906 CNDP1Q96KN2 507 aa12.11□□□□□ -0.47
AP003559.1-201ENST00000540906 COQ10AQ96MF6 247 aa12.11□□□□□ -0.47
AP003559.1-201ENST00000540906 SAR1AQ9NR31 198 aa12.11□□□□□ -0.47
AP003559.1-201ENST00000540906 STON1Q9Y6Q2 735 aa12.11□□□□□ -0.47
AP003559.1-201ENST00000540906 CKAP5Q14008 2032 aa12.1□□□□□ -0.47
AP003559.1-201ENST00000540906 GRXCR2A6NFK2 248 aa12.1□□□□□ -0.47
AP003559.1-201ENST00000540906 E9PBE3 544 aa12.1□□□□□ -0.47
AP003559.1-201ENST00000540906 ANHXE9PGG2 379 aa12.1□□□□□ -0.47
AP003559.1-201ENST00000540906 K7ESM1 405 aa12.1□□□□□ -0.47
AP003559.1-201ENST00000540906 KLK8O60259 260 aa12.1□□□□□ -0.47
AP003559.1-201ENST00000540906 KLHL41O60662 606 aa12.1□□□□□ -0.47
AP003559.1-201ENST00000540906 MMP20O60882 483 aa12.1□□□□□ -0.47
AP003559.1-201ENST00000540906 SKAP2O75563 359 aaPredicted RBP12.1□□□□□ -0.47
AP003559.1-201ENST00000540906 ELFN1P0C7U0 828 aa12.1□□□□□ -0.47
AP003559.1-201ENST00000540906 ADRB3P13945 408 aa12.1□□□□□ -0.47
AP003559.1-201ENST00000540906 GFAPP14136 432 aa12.1□□□□□ -0.47
AP003559.1-201ENST00000540906 SKIV2L2P42285 1042 aaKnown RBP12.1□□□□□ -0.47
AP003559.1-201ENST00000540906 MTHFRP42898 656 aa12.1□□□□□ -0.47
AP003559.1-201ENST00000540906 CPA2P48052 419 aa12.1□□□□□ -0.47
AP003559.1-201ENST00000540906 FOXA1P55317 472 aa12.1□□□□□ -0.47
AP003559.1-201ENST00000540906 DCDC1P59894 354 aa12.1□□□□□ -0.47
AP003559.1-201ENST00000540906 SH3BP2P78314 561 aa12.1□□□□□ -0.47
AP003559.1-201ENST00000540906 ACOX1Q15067 660 aa12.1□□□□□ -0.47
AP003559.1-201ENST00000540906 FAM91A1Q658Y4 838 aa12.1□□□□□ -0.47
AP003559.1-201ENST00000540906 TMEM198Q66K66 360 aa12.1□□□□□ -0.47
AP003559.1-201ENST00000540906 CLEC6AQ6EIG7 209 aa12.1□□□□□ -0.47
AP003559.1-201ENST00000540906 UGT3A1Q6NUS8 523 aa12.1□□□□□ -0.47
AP003559.1-201ENST00000540906 VRK3Q8IV63 474 aa12.1□□□□□ -0.47
AP003559.1-201ENST00000540906 FBXO39Q8N4B4 442 aa12.1□□□□□ -0.47
AP003559.1-201ENST00000540906 ZBTB2Q8N680 514 aa12.1□□□□□ -0.47
AP003559.1-201ENST00000540906 PPM1EQ8WY54 764 aa12.1□□□□□ -0.47
AP003559.1-201ENST00000540906 SUSD6Q92537 303 aa12.1□□□□□ -0.47
AP003559.1-201ENST00000540906 CCDC126Q96EE4 140 aa12.1□□□□□ -0.47
AP003559.1-201ENST00000540906 SIKE1Q9BRV8 207 aa12.1□□□□□ -0.47
AP003559.1-201ENST00000540906 CNOT6Q9ULM6 557 aaKnown RBP12.1□□□□□ -0.47
AP003559.1-201ENST00000540906 PTGDR2Q9Y5Y4 395 aa12.1□□□□□ -0.47
AP003559.1-201ENST00000540906 PRUNE2Q8WUY3 3088 aa12.1□□□□□ -0.47
AP003559.1-201ENST00000540906 TMEM202A6NGA9 273 aa12.09□□□□□ -0.47
AP003559.1-201ENST00000540906 SDHDO14521 159 aa12.09□□□□□ -0.47
AP003559.1-201ENST00000540906 INPP4BO15327 924 aa12.09□□□□□ -0.47
AP003559.1-201ENST00000540906 HDAC3O15379 428 aa12.09□□□□□ -0.47
AP003559.1-201ENST00000540906 CDK14O94921 469 aa12.09□□□□□ -0.47
AP003559.1-201ENST00000540906 APODP05090 189 aa12.09□□□□□ -0.47
AP003559.1-201ENST00000540906 SERPINA6P08185 405 aa12.09□□□□□ -0.47
AP003559.1-201ENST00000540906 RPS17P08708 135 aaKnown RBP12.09□□□□□ -0.47
AP003559.1-201ENST00000540906 PRDX3P30048 256 aaKnown RBP12.09□□□□□ -0.47
AP003559.1-201ENST00000540906 DRD3P35462 400 aa12.09□□□□□ -0.47
AP003559.1-201ENST00000540906 TIE1P35590 1138 aa12.09□□□□□ -0.47
AP003559.1-201ENST00000540906 EIF2DP41214 584 aaKnown RBP12.09□□□□□ -0.47
AP003559.1-201ENST00000540906 P2RY2P41231 377 aa12.09□□□□□ -0.47
AP003559.1-201ENST00000540906 NSG1P42857 185 aa12.09□□□□□ -0.47
AP003559.1-201ENST00000540906 ASPHQ12797 758 aa12.09□□□□□ -0.47
AP003559.1-201ENST00000540906 CNTN1Q12860 1018 aa12.09□□□□□ -0.47
AP003559.1-201ENST00000540906 ENPP2Q13822 863 aa12.09□□□□□ -0.47
AP003559.1-201ENST00000540906 CCDC85BQ15834 202 aaPredicted RBP12.09□□□□□ -0.47
AP003559.1-201ENST00000540906 PHKG1Q16816 387 aa12.09□□□□□ -0.47
AP003559.1-201ENST00000540906 PPP1R3AQ16821 1122 aa12.09□□□□□ -0.47
AP003559.1-201ENST00000540906 LSM12Q3MHD2 195 aaKnown RBP12.09□□□□□ -0.47
AP003559.1-201ENST00000540906 SEL1L3Q68CR1 1132 aa12.09□□□□□ -0.47
AP003559.1-201ENST00000540906 TRIM74Q86UV6 250 aa12.09□□□□□ -0.47
AP003559.1-201ENST00000540906 AADATQ8N5Z0 425 aa12.09□□□□□ -0.47
AP003559.1-201ENST00000540906 TRAM1L1Q8N609 369 aa12.09□□□□□ -0.47
AP003559.1-201ENST00000540906 DEFB123Q8N688 67 aa12.09□□□□□ -0.47
AP003559.1-201ENST00000540906 PDLIM5Q96HC4 596 aaKnown RBP12.09□□□□□ -0.47
AP003559.1-201ENST00000540906 MARK4Q96L34 752 aa12.09□□□□□ -0.47
AP003559.1-201ENST00000540906 KCNA7Q96RP8 456 aa12.09□□□□□ -0.47
AP003559.1-201ENST00000540906 MIPEPQ99797 713 aa12.09□□□□□ -0.47
AP003559.1-201ENST00000540906 ZBTB26Q9HCK0 441 aa12.09□□□□□ -0.47
AP003559.1-201ENST00000540906 SMOXQ9NWM0 555 aa12.09□□□□□ -0.47
AP003559.1-201ENST00000540906 NFKBIL1Q9UBC1 381 aaPredicted RBP12.09□□□□□ -0.47
AP003559.1-201ENST00000540906 EPS15L1Q9UBC2 864 aa12.09□□□□□ -0.47
AP003559.1-201ENST00000540906 SERGEFQ9UGK8 458 aa12.09□□□□□ -0.47
AP003559.1-201ENST00000540906 G3BP2Q9UN86 482 aaKnown RBP12.09□□□□□ -0.47
AP003559.1-201ENST00000540906 KRT87PA6NCN2 255 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms