RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 A0A0J9YYE9 177 aa13.97□□□□□ -0.17
USP3-204ENST00000540797 ZNF623O75123 536 aa13.97□□□□□ -0.17
USP3-204ENST00000540797 ZNF24P17028 368 aa13.97□□□□□ -0.17
USP3-204ENST00000540797 SLC1A2P43004 574 aa13.97□□□□□ -0.17
USP3-204ENST00000540797 MS4A13Q5J8X5 152 aa13.97□□□□□ -0.17
USP3-204ENST00000540797 MORN1Q5T089 497 aa13.97□□□□□ -0.17
USP3-204ENST00000540797 DEF8Q6ZN54 512 aa13.97□□□□□ -0.17
USP3-204ENST00000540797 TAS1R3Q7RTX0 852 aa13.97□□□□□ -0.17
USP3-204ENST00000540797 ZCCHC10Q8TBK6 192 aa13.97□□□□□ -0.17
USP3-204ENST00000540797 PTGES3LE9PB15 166 aa13.97□□□□□ -0.17
USP3-204ENST00000540797 UGT1A9O60656 530 aa13.97□□□□□ -0.17
USP3-204ENST00000540797 TGDSO95455 350 aa13.97□□□□□ -0.17
USP3-204ENST00000540797 UGT1A6P19224 532 aa13.97□□□□□ -0.17
USP3-204ENST00000540797 UGT1A1P22309 533 aa13.97□□□□□ -0.17
USP3-204ENST00000540797 UGT1A4P22310 534 aa13.97□□□□□ -0.17
USP3-204ENST00000540797 UGT1A3P35503 534 aa13.97□□□□□ -0.17
USP3-204ENST00000540797 UGT1A5P35504 534 aa13.97□□□□□ -0.17
USP3-204ENST00000540797 MAPK12P53778 367 aa13.97□□□□□ -0.17
USP3-204ENST00000540797 EXOSC8Q96B26 276 aaKnown RBP13.97□□□□□ -0.17
USP3-204ENST00000540797 GPR62Q9BZJ7 368 aa13.97□□□□□ -0.17
USP3-204ENST00000540797 UGT1A7Q9HAW7 530 aa13.97□□□□□ -0.17
USP3-204ENST00000540797 UGT1A10Q9HAW8 530 aa13.97□□□□□ -0.17
USP3-204ENST00000540797 UGT1A8Q9HAW9 530 aa13.97□□□□□ -0.17
USP3-204ENST00000540797 DNAJC28Q9NX36 388 aa13.97□□□□□ -0.17
USP3-204ENST00000540797 NDUFA13Q9P0J0 144 aa13.97□□□□□ -0.17
USP3-204ENST00000540797 SIRPGQ9P1W8 387 aa13.97□□□□□ -0.17
USP3-204ENST00000540797 HOXD13P35453 343 aa13.96□□□□□ -0.17
USP3-204ENST00000540797 STXBP1P61764 594 aaKnown RBP13.96□□□□□ -0.17
USP3-204ENST00000540797 PLEKHG4Q58EX7 1191 aa13.96□□□□□ -0.17
USP3-204ENST00000540797 PDE12Q6L8Q7 609 aaKnown RBP13.96□□□□□ -0.17
USP3-204ENST00000540797 SIN3BO75182 1162 aa13.96□□□□□ -0.17
USP3-204ENST00000540797 TALDO1P37837 337 aa13.96□□□□□ -0.17
USP3-204ENST00000540797 PNLIPRP1P54315 467 aa13.96□□□□□ -0.17
USP3-204ENST00000540797 NRG1Q02297 640 aaPredicted RBP13.96□□□□□ -0.17
USP3-204ENST00000540797 ITPRIPL2Q3MIP1 535 aa13.96□□□□□ -0.17
USP3-204ENST00000540797 TERB1Q8NA31 727 aa13.96□□□□□ -0.17
USP3-204ENST00000540797 ZNF563Q8TA94 476 aa13.96□□□□□ -0.17
USP3-204ENST00000540797 MAGEE2Q8TD90 523 aaPredicted RBP13.96□□□□□ -0.17
USP3-204ENST00000540797 RAB11FIP5Q9BXF6 653 aa13.96□□□□□ -0.17
USP3-204ENST00000540797 KLHL1Q9NR64 748 aa13.96□□□□□ -0.17
USP3-204ENST00000540797 CNMDO75829 334 aa13.96□□□□□ -0.17
USP3-204ENST00000540797 BMP7P18075 431 aa13.96□□□□□ -0.17
USP3-204ENST00000540797 VIPR1P32241 457 aa13.96□□□□□ -0.17
USP3-204ENST00000540797 ZNF460Q14592 562 aa13.96□□□□□ -0.17
USP3-204ENST00000540797 AMZ1Q400G9 498 aa13.96□□□□□ -0.17
USP3-204ENST00000540797 LRRC74BQ6ZQY2 392 aa13.96□□□□□ -0.17
USP3-204ENST00000540797 SHISA4Q96DD7 197 aa13.96□□□□□ -0.17
USP3-204ENST00000540797 VPS35Q96QK1 796 aa13.96□□□□□ -0.17
USP3-204ENST00000540797 ADAM30Q9UKF2 790 aa13.96□□□□□ -0.17
USP3-204ENST00000540797 SUV39H1O43463 412 aa13.96□□□□□ -0.18
USP3-204ENST00000540797 PI15O43692 258 aa13.96□□□□□ -0.18
USP3-204ENST00000540797 UNC5CO95185 931 aa13.96□□□□□ -0.18
USP3-204ENST00000540797 RHOP08100 348 aa13.96□□□□□ -0.18
USP3-204ENST00000540797 GSTM5P46439 218 aa13.96□□□□□ -0.18
USP3-204ENST00000540797 DGKKQ5KSL6 1271 aa13.96□□□□□ -0.18
USP3-204ENST00000540797 MFSD5Q6N075 450 aa13.96□□□□□ -0.18
USP3-204ENST00000540797 MTERF3Q96E29 417 aa13.96□□□□□ -0.18
USP3-204ENST00000540797 ZDHHC3Q9NYG2 299 aa13.96□□□□□ -0.18
USP3-204ENST00000540797 FBXW2Q9UKT8 454 aa13.96□□□□□ -0.18
USP3-204ENST00000540797 MFHAS1Q9Y4C4 1052 aa13.96□□□□□ -0.18
USP3-204ENST00000540797 RGPD2P0DJD1 1756 aa13.95□□□□□ -0.18
USP3-204ENST00000540797 BBIP1A8MTZ0 92 aa13.95□□□□□ -0.18
USP3-204ENST00000540797 PITPNM1O00562 1244 aa13.95□□□□□ -0.18
USP3-204ENST00000540797 TCF4P15884 667 aa13.95□□□□□ -0.18
USP3-204ENST00000540797 DRD4P21917 467 aa13.95□□□□□ -0.18
USP3-204ENST00000540797 CDH5P33151 784 aaPredicted RBP13.95□□□□□ -0.18
USP3-204ENST00000540797 CCNHP51946 323 aaPredicted RBP13.95□□□□□ -0.18
USP3-204ENST00000540797 SPIBQ01892 262 aa13.95□□□□□ -0.18
USP3-204ENST00000540797 SPESP1Q6UW49 350 aa13.95□□□□□ -0.18
USP3-204ENST00000540797 LYSMD3Q7Z3D4 306 aa13.95□□□□□ -0.18
USP3-204ENST00000540797 PTPN18Q99952 460 aa13.95□□□□□ -0.18
USP3-204ENST00000540797 ZSCAN5AQ9BUG6 496 aa13.95□□□□□ -0.18
USP3-204ENST00000540797 SLITRK2Q9H156 845 aa13.95□□□□□ -0.18
USP3-204ENST00000540797 ZNF446Q9NWS9 450 aa13.95□□□□□ -0.18
USP3-204ENST00000540797 EIF2B4Q9UI10 523 aaKnown RBP13.95□□□□□ -0.18
USP3-204ENST00000540797 FAM25AB3EWG3 89 aa13.95□□□□□ -0.18
USP3-204ENST00000540797 FAM25CB3EWG5 89 aa13.95□□□□□ -0.18
USP3-204ENST00000540797 FAM25GB3EWG6 89 aa13.95□□□□□ -0.18
USP3-204ENST00000540797 OR10H3O60404 316 aa13.95□□□□□ -0.18
USP3-204ENST00000540797 PSMG1O95456 288 aa13.95□□□□□ -0.18
USP3-204ENST00000540797 TSPAN19P0C672 248 aa13.95□□□□□ -0.18
USP3-204ENST00000540797 UROSP10746 265 aa13.95□□□□□ -0.18
USP3-204ENST00000540797 TAS2R39P59534 338 aa13.95□□□□□ -0.18
USP3-204ENST00000540797 ZNF155Q12901 538 aaPredicted RBP13.95□□□□□ -0.18
USP3-204ENST00000540797 EPS8Q12929 822 aa13.95□□□□□ -0.18
USP3-204ENST00000540797 RFTN2Q52LD8 501 aaPredicted RBP13.95□□□□□ -0.18
USP3-204ENST00000540797 SIRPB2Q5JXA9 342 aa13.95□□□□□ -0.18
USP3-204ENST00000540797 CLEC6AQ6EIG7 209 aa13.95□□□□□ -0.18
USP3-204ENST00000540797 TXNRD3NBQ6F5E7 133 aa13.95□□□□□ -0.18
USP3-204ENST00000540797 BNIPLQ7Z465 357 aa13.95□□□□□ -0.18
USP3-204ENST00000540797 DTNBP1Q96EV8 351 aa13.95□□□□□ -0.18
USP3-204ENST00000540797 TMEM209Q96SK2 561 aa13.95□□□□□ -0.18
USP3-204ENST00000540797 GMEB2Q9UKD1 530 aa13.95□□□□□ -0.18
USP3-204ENST00000540797 SRRM3A6NNA2 597 aaPredicted RBP13.95□□□□□ -0.18
USP3-204ENST00000540797 OR6B1O95007 311 aa13.95□□□□□ -0.18
USP3-204ENST00000540797 PTSQ03393 145 aa13.95□□□□□ -0.18
USP3-204ENST00000540797 ASTE1Q2TB18 679 aaPredicted RBP13.95□□□□□ -0.18
USP3-204ENST00000540797 IL23RQ5VWK5 629 aa13.95□□□□□ -0.18
USP3-204ENST00000540797 NET1Q7Z628 596 aaPredicted RBP13.95□□□□□ -0.18
USP3-204ENST00000540797 SLC35B2Q8TB61 432 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms