RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, humanhuman

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-209ENST00000540747 PDLIM2Q96JY6 352 aa7.17□□□□□ -1.26
YBX3-209ENST00000540747 PCMTD1Q96MG8 357 aaPredicted RBP7.17□□□□□ -1.26
YBX3-209ENST00000540747 ZSCAN5AQ9BUG6 496 aa7.17□□□□□ -1.26
YBX3-209ENST00000540747 NUP85Q9BW27 656 aa7.17□□□□□ -1.26
YBX3-209ENST00000540747 HAUS4Q9H6D7 363 aa7.17□□□□□ -1.26
YBX3-209ENST00000540747 RBM22Q9NW64 420 aaKnown RBP eCLIP7.17□□□□□ -1.26
YBX3-209ENST00000540747 PKD2L2Q9NZM6 624 aa7.17□□□□□ -1.26
YBX3-209ENST00000540747 WDR37Q9Y2I8 494 aa7.17□□□□□ -1.26
YBX3-209ENST00000540747 PCDHGB7Q9Y5F8 929 aa7.17□□□□□ -1.26
YBX3-209ENST00000540747 ADGRG4Q8IZF6 3080 aa7.17□□□□□ -1.26
YBX3-209ENST00000540747 PDZD2O15018 2839 aa7.17□□□□□ -1.26
YBX3-209ENST00000540747 TACC2O95359 2948 aa7.16□□□□□ -1.26
YBX3-209ENST00000540747 F8P00451 2351 aa7.16□□□□□ -1.26
YBX3-209ENST00000540747 ENO4A6NNW6 628 aa7.16□□□□□ -1.26
YBX3-209ENST00000540747 KMOO15229 486 aa7.16□□□□□ -1.26
YBX3-209ENST00000540747 VEGFDO43915 354 aa7.16□□□□□ -1.26
YBX3-209ENST00000540747 RASSF9O75901 435 aa7.16□□□□□ -1.26
YBX3-209ENST00000540747 MTA2O94776 668 aa7.16□□□□□ -1.26
YBX3-209ENST00000540747 SLC25A14O95258 325 aaPredicted RBP7.16□□□□□ -1.26
YBX3-209ENST00000540747 JCHAINP01591 159 aa7.16□□□□□ -1.26
YBX3-209ENST00000540747 CAPN1P07384 714 aa7.16□□□□□ -1.26
YBX3-209ENST00000540747 CCNYL3P0C7X3 344 aa7.16□□□□□ -1.26
YBX3-209ENST00000540747 AMD1P17707 334 aa7.16□□□□□ -1.26
YBX3-209ENST00000540747 CA4P22748 312 aa7.16□□□□□ -1.26
YBX3-209ENST00000540747 PTGIRP43119 386 aa7.16□□□□□ -1.26
YBX3-209ENST00000540747 PPM1FP49593 454 aaPredicted RBP7.16□□□□□ -1.26
YBX3-209ENST00000540747 ZNF165P49910 485 aa7.16□□□□□ -1.26
YBX3-209ENST00000540747 IFI35P80217 286 aaPredicted RBP7.16□□□□□ -1.26
YBX3-209ENST00000540747 GBE1Q04446 702 aa7.16□□□□□ -1.26
YBX3-209ENST00000540747 DMPKQ09013 629 aa7.16□□□□□ -1.26
YBX3-209ENST00000540747 SLC10A2Q12908 348 aaPredicted RBP7.16□□□□□ -1.26
YBX3-209ENST00000540747 ZBTB17Q13105 803 aa7.16□□□□□ -1.26
YBX3-209ENST00000540747 CHAF1BQ13112 559 aa7.16□□□□□ -1.26
YBX3-209ENST00000540747 GPS2Q13227 327 aa7.16□□□□□ -1.26
YBX3-209ENST00000540747 MRPL49Q13405 166 aaKnown RBP7.16□□□□□ -1.26
YBX3-209ENST00000540747 TUBB3Q13509 450 aa7.16□□□□□ -1.26
YBX3-209ENST00000540747 PIGHQ14442 188 aaPredicted RBP7.16□□□□□ -1.26
YBX3-209ENST00000540747 KCNAB1Q14722 419 aa7.16□□□□□ -1.26
YBX3-209ENST00000540747 IFI16Q16666 785 aaKnown RBP7.16□□□□□ -1.26
YBX3-209ENST00000540747 IZUMO3Q5VZ72 239 aa7.16□□□□□ -1.26
YBX3-209ENST00000540747 TIGD7Q6NT04 549 aaPredicted RBP7.16□□□□□ -1.26
YBX3-209ENST00000540747 JMJD6Q6NYC1 403 aaPredicted RBP7.16□□□□□ -1.26
YBX3-209ENST00000540747 FAM199XQ6PEV8 388 aaPredicted RBP7.16□□□□□ -1.26
YBX3-209ENST00000540747 CRTC3Q6UUV7 619 aa7.16□□□□□ -1.26
YBX3-209ENST00000540747 FAM92BQ6ZTR7 304 aa7.16□□□□□ -1.26
YBX3-209ENST00000540747 MAMDC2Q7Z304 686 aaPredicted RBP7.16□□□□□ -1.26
YBX3-209ENST00000540747 LRRTM4Q86VH4 590 aa7.16□□□□□ -1.26
YBX3-209ENST00000540747 BPHLQ86WA6 291 aaPredicted RBP7.16□□□□□ -1.26
YBX3-209ENST00000540747 KMT5CQ86Y97 462 aa7.16□□□□□ -1.26
YBX3-209ENST00000540747 CPNE8Q86YQ8 564 aa7.16□□□□□ -1.26
YBX3-209ENST00000540747 D2HGDHQ8N465 521 aa7.16□□□□□ -1.26
YBX3-209ENST00000540747 RBMXL3Q8N7X1 1067 aaKnown RBP7.16□□□□□ -1.26
YBX3-209ENST00000540747 SLC38A9Q8NBW4 561 aa7.16□□□□□ -1.26
YBX3-209ENST00000540747 GPR150Q8NGU9 434 aa7.16□□□□□ -1.26
YBX3-209ENST00000540747 HDAC11Q96DB2 347 aa7.16□□□□□ -1.26
YBX3-209ENST00000540747 TRIM11Q96F44 468 aa7.16□□□□□ -1.26
YBX3-209ENST00000540747 ZDHHC12Q96GR4 267 aa7.16□□□□□ -1.26
YBX3-209ENST00000540747 ZNF514Q96K75 400 aaPredicted RBP7.16□□□□□ -1.26
YBX3-209ENST00000540747 LRFN5Q96NI6 719 aa7.16□□□□□ -1.26
YBX3-209ENST00000540747 VPS35Q96QK1 796 aa7.16□□□□□ -1.26
YBX3-209ENST00000540747 BARD1Q99728 777 aaKnown RBP7.16□□□□□ -1.26
YBX3-209ENST00000540747 ZNF670Q9BS34 389 aa7.16□□□□□ -1.26
YBX3-209ENST00000540747 SLC25A23Q9BV35 468 aa7.16□□□□□ -1.26
YBX3-209ENST00000540747 MLPHQ9BV36 600 aaPredicted RBP7.16□□□□□ -1.26
YBX3-209ENST00000540747 ING2Q9H160 280 aa7.16□□□□□ -1.26
YBX3-209ENST00000540747 OSGEPL1Q9H4B0 414 aa7.16□□□□□ -1.26
YBX3-209ENST00000540747 MRPL47Q9HD33 250 aaKnown RBP7.16□□□□□ -1.26
YBX3-209ENST00000540747 LATS2Q9NRM7 1088 aa7.16□□□□□ -1.26
YBX3-209ENST00000540747 ERRFI1Q9UJM3 462 aaPredicted RBP7.16□□□□□ -1.26
YBX3-209ENST00000540747 RARRES3Q9UL19 164 aa7.16□□□□□ -1.26
YBX3-209ENST00000540747 SETD2Q9BYW2 2564 aaPredicted RBP7.16□□□□□ -1.26
YBX3-209ENST00000540747 NF1P21359 2839 aa7.15□□□□□ -1.26
YBX3-209ENST00000540747 SPTBP11277 2137 aa7.15□□□□□ -1.26
YBX3-209ENST00000540747 SSU72P8A0A1W2PR75 194 aa7.15□□□□□ -1.26
YBX3-209ENST00000540747 A1L4Q6 167 aa7.15□□□□□ -1.26
YBX3-209ENST00000540747 ARGFXA6NJG6 315 aa7.15□□□□□ -1.26
YBX3-209ENST00000540747 PDZK1P1A8MUH7 402 aa7.15□□□□□ -1.26
YBX3-209ENST00000540747 MTX2O75431 263 aa7.15□□□□□ -1.26
YBX3-209ENST00000540747 CYP1A2P05177 515 aa7.15□□□□□ -1.26
YBX3-209ENST00000540747 RAB40ALP0C0E4 278 aa7.15□□□□□ -1.26
YBX3-209ENST00000540747 EBLN1P0CF75 366 aa7.15□□□□□ -1.26
YBX3-209ENST00000540747 BPIP17213 487 aa7.15□□□□□ -1.26
YBX3-209ENST00000540747 FECHP22830 423 aa7.15□□□□□ -1.26
YBX3-209ENST00000540747 RPL10P27635 214 aaKnown RBP7.15□□□□□ -1.26
YBX3-209ENST00000540747 COL8A1P27658 744 aa7.15□□□□□ -1.26
YBX3-209ENST00000540747 RORAP35398 523 aa7.15□□□□□ -1.26
YBX3-209ENST00000540747 CD86P42081 329 aa7.15□□□□□ -1.26
YBX3-209ENST00000540747 DRG2P55039 364 aaKnown RBP7.15□□□□□ -1.26
YBX3-209ENST00000540747 ACY1Q03154 408 aa7.15□□□□□ -1.26
YBX3-209ENST00000540747 ITKQ08881 620 aa7.15□□□□□ -1.26
YBX3-209ENST00000540747 GALNT3Q14435 633 aa7.15□□□□□ -1.26
YBX3-209ENST00000540747 CHRNA6Q15825 494 aa7.15□□□□□ -1.26
YBX3-209ENST00000540747 SLC14A2Q15849 920 aa7.15□□□□□ -1.26
YBX3-209ENST00000540747 SEPT7Q16181 437 aaKnown RBP7.15□□□□□ -1.26
YBX3-209ENST00000540747 ASIC2Q16515 512 aa7.15□□□□□ -1.26
YBX3-209ENST00000540747 INSCQ1MX18 579 aa7.15□□□□□ -1.26
YBX3-209ENST00000540747 PLA2G4EQ3MJ16 856 aa7.15□□□□□ -1.26
YBX3-209ENST00000540747 ATP13A4Q4VNC1 1196 aa7.15□□□□□ -1.26
YBX3-209ENST00000540747 TDRD12Q587J7 1177 aaKnown RBP7.15□□□□□ -1.26
YBX3-209ENST00000540747 ZNF789Q5FWF6 425 aa7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms