RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 DNAJB9Q9UBS3 223 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 SLCO3A1Q9UIG8 710 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 NUDT5Q9UKK9 219 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 TESMINQ9Y4I5 508 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 GJA3Q9Y6H8 435 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 ANKRD31Q8N7Z5 1873 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 AXIN1O15169 862 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 FAM20BO75063 409 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 GRK3P35626 688 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 TGFBR1P36897 503 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 CXCR3P49682 368 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 DEFA1P59665 94 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 DEFA3P59666 94 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 INTS6LQ5JSJ4 861 aaKnown RBP12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 FAM209AQ5JX71 171 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 ANKS6Q68DC2 871 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 DESI1Q6ICB0 168 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 CATSPERGQ6ZRH7 1159 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 PLPPR4Q7Z2D5 763 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 PSD4Q8NDX1 1056 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 ATL1Q8WXF7 558 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 L3HYPDHQ96EM0 354 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 DEPDC7Q96QD5 511 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 ACOX2Q99424 681 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 ZBED2Q9BTP6 218 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 DUSP16Q9BY84 665 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 TUBB1Q9H4B7 451 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 USE1Q9NZ43 259 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 ZNF221Q9UK13 617 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 FBXW11Q9UKB1 542 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 ITM2BQ9Y287 266 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 ZNF638Q14966 1978 aaKnown RBP12.71□□□□□ -0.37
SFSWAP-209ENST00000540469 SOWAHBA6NEL2 793 aa12.71□□□□□ -0.37
SFSWAP-209ENST00000540469 EFCAB9A8MZ26 197 aa12.71□□□□□ -0.37
SFSWAP-209ENST00000540469 MYO1GB0I1T2 1018 aa12.71□□□□□ -0.37
SFSWAP-209ENST00000540469 VPS4BO75351 444 aa12.71□□□□□ -0.37
SFSWAP-209ENST00000540469 UPK1BO75841 260 aa12.71□□□□□ -0.37
SFSWAP-209ENST00000540469 GRIK1P39086 918 aa12.71□□□□□ -0.37
SFSWAP-209ENST00000540469 WNT3AP56704 352 aa12.71□□□□□ -0.37
SFSWAP-209ENST00000540469 RCAN2Q14206 197 aa12.71□□□□□ -0.37
SFSWAP-209ENST00000540469 SYT16Q17RD7 645 aa12.71□□□□□ -0.37
SFSWAP-209ENST00000540469 C9orf57Q5W0N0 161 aa12.71□□□□□ -0.37
SFSWAP-209ENST00000540469 ENPP6Q6UWR7 440 aa12.71□□□□□ -0.37
SFSWAP-209ENST00000540469 OR2T12Q8NG77 320 aa12.71□□□□□ -0.37
SFSWAP-209ENST00000540469 RHOXF1Q8NHV9 184 aa12.71□□□□□ -0.37
SFSWAP-209ENST00000540469 FAR1Q8WVX9 515 aa12.71□□□□□ -0.37
SFSWAP-209ENST00000540469 LGALS12Q96DT0 336 aa12.71□□□□□ -0.37
SFSWAP-209ENST00000540469 TXNDC15Q96J42 360 aa12.71□□□□□ -0.37
SFSWAP-209ENST00000540469 FAM49AQ9H0Q0 323 aaPredicted RBP12.71□□□□□ -0.37
SFSWAP-209ENST00000540469 THG1LQ9NWX6 298 aaKnown RBP12.71□□□□□ -0.37
SFSWAP-209ENST00000540469 ERAP1Q9NZ08 941 aa12.71□□□□□ -0.37
SFSWAP-209ENST00000540469 ZNF639Q9UID6 485 aa12.71□□□□□ -0.37
SFSWAP-209ENST00000540469 INVSQ9Y283 1065 aa12.71□□□□□ -0.37
SFSWAP-209ENST00000540469 M0QX08 132 aa12.71□□□□□ -0.37
SFSWAP-209ENST00000540469 TSPAN1O60635 241 aa12.71□□□□□ -0.37
SFSWAP-209ENST00000540469 DNAJB5O75953 348 aa12.71□□□□□ -0.37
SFSWAP-209ENST00000540469 CD36P16671 472 aa12.71□□□□□ -0.37
SFSWAP-209ENST00000540469 SPATS1Q496A3 300 aa12.71□□□□□ -0.37
SFSWAP-209ENST00000540469 COQ5Q5HYK3 327 aa12.71□□□□□ -0.37
SFSWAP-209ENST00000540469 CELF3Q5SZQ8 465 aaKnown RBP12.71□□□□□ -0.37
SFSWAP-209ENST00000540469 USP43Q70EL4 1123 aa12.71□□□□□ -0.37
SFSWAP-209ENST00000540469 BNIPLQ7Z465 357 aa12.71□□□□□ -0.37
SFSWAP-209ENST00000540469 SPATA19Q7Z5L4 167 aa12.71□□□□□ -0.37
SFSWAP-209ENST00000540469 ADHFE1Q8IWW8 467 aa12.71□□□□□ -0.37
SFSWAP-209ENST00000540469 LRRC52Q8N7C0 313 aa12.71□□□□□ -0.37
SFSWAP-209ENST00000540469 FAM86B1Q8N7N1 296 aa12.71□□□□□ -0.37
SFSWAP-209ENST00000540469 ZNF560Q96MR9 790 aa12.71□□□□□ -0.37
SFSWAP-209ENST00000540469 FCRL5Q96RD9 977 aa12.71□□□□□ -0.37
SFSWAP-209ENST00000540469 ALOXE3Q9BYJ1 711 aa12.71□□□□□ -0.37
SFSWAP-209ENST00000540469 DCSTAMPQ9H295 470 aa12.71□□□□□ -0.37
SFSWAP-209ENST00000540469 KAT8Q9H7Z6 458 aaKnown RBP12.71□□□□□ -0.37
SFSWAP-209ENST00000540469 SP140LQ9H930 580 aa12.71□□□□□ -0.37
SFSWAP-209ENST00000540469 FBXO8Q9NRD0 319 aa12.71□□□□□ -0.37
SFSWAP-209ENST00000540469 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.71□□□□□ -0.37
SFSWAP-209ENST00000540469 PRELID1Q9Y255 219 aa12.71□□□□□ -0.37
SFSWAP-209ENST00000540469 CAB39Q9Y376 341 aaPredicted RBP12.71□□□□□ -0.37
SFSWAP-209ENST00000540469 GPR45Q9Y5Y3 372 aa12.71□□□□□ -0.37
SFSWAP-209ENST00000540469 SIP14410 1827 aa12.71□□□□□ -0.38
SFSWAP-209ENST00000540469 EEDO75530 441 aaKnown RBP12.71□□□□□ -0.38
SFSWAP-209ENST00000540469 PTPN2P17706 415 aa12.71□□□□□ -0.38
SFSWAP-209ENST00000540469 IFITM2Q01629 132 aa12.71□□□□□ -0.38
SFSWAP-209ENST00000540469 LCP2Q13094 533 aa12.71□□□□□ -0.38
SFSWAP-209ENST00000540469 LYSMD2Q8IV50 215 aa12.71□□□□□ -0.38
SFSWAP-209ENST00000540469 CRYBG2Q8N1P7 616 aa12.71□□□□□ -0.38
SFSWAP-209ENST00000540469 DEPDC4Q8N2C3 294 aa12.71□□□□□ -0.38
SFSWAP-209ENST00000540469 ESAMQ96AP7 390 aa12.71□□□□□ -0.38
SFSWAP-209ENST00000540469 INTS6Q9UL03 887 aaKnown RBP12.71□□□□□ -0.38
SFSWAP-209ENST00000540469 LOC100506127A0A0U1RQW1 187 aa12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 ASB14A6NK59 587 aa12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 KATNA1O75449 491 aa12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 C22orf31O95567 290 aa12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 MOCS2O96007 188 aaPredicted RBP12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 HPRP00739 348 aa12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 CCR1P32246 355 aa12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 DGKQP52824 942 aa12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 MAXP61244 160 aa12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 SELPLGQ14242 412 aa12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 LAPTM4AQ15012 233 aa12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 STEAP3Q658P3 488 aa12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 OR10A6Q8NH74 314 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms