RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 HDAC10Q969S8 669 aa13.85□□□□□ -0.19
LIG1-203ENST00000536218 SEPT5Q99719 369 aaPredicted RBP13.85□□□□□ -0.19
LIG1-203ENST00000536218 PLSCR3Q9NRY6 295 aa13.85□□□□□ -0.19
LIG1-203ENST00000536218 CACNA2D2Q9NY47 1150 aa13.85□□□□□ -0.19
LIG1-203ENST00000536218 RAP2CQ9Y3L5 183 aa13.85□□□□□ -0.19
LIG1-203ENST00000536218 MRASO14807 208 aa13.85□□□□□ -0.19
LIG1-203ENST00000536218 PSMA4P25789 261 aaKnown RBP13.85□□□□□ -0.19
LIG1-203ENST00000536218 VBP1P61758 197 aa13.85□□□□□ -0.19
LIG1-203ENST00000536218 TRAP1Q12931 704 aaKnown RBP13.85□□□□□ -0.19
LIG1-203ENST00000536218 TUBA3CQ13748 450 aa13.85□□□□□ -0.19
LIG1-203ENST00000536218 SAMD4BQ5PRF9 694 aaKnown RBP13.85□□□□□ -0.19
LIG1-203ENST00000536218 STRA8Q7Z7C7 330 aa13.85□□□□□ -0.19
LIG1-203ENST00000536218 DCP1BQ8IZD4 617 aaKnown RBP13.85□□□□□ -0.19
LIG1-203ENST00000536218 PNPT1Q8TCS8 783 aaKnown RBP13.85□□□□□ -0.19
LIG1-203ENST00000536218 ELMO1Q92556 727 aa13.85□□□□□ -0.19
LIG1-203ENST00000536218 LRRC40Q9H9A6 602 aa13.85□□□□□ -0.19
LIG1-203ENST00000536218 HMX1Q9NP08 348 aaPredicted RBP13.85□□□□□ -0.19
LIG1-203ENST00000536218 PNMA8BQ9ULN7 279 aaPredicted RBP13.85□□□□□ -0.19
LIG1-203ENST00000536218 PDZK1P1A8MUH7 402 aa13.84□□□□□ -0.19
LIG1-203ENST00000536218 AXIN1O15169 862 aa13.84□□□□□ -0.19
LIG1-203ENST00000536218 ABCB7O75027 752 aa13.84□□□□□ -0.19
LIG1-203ENST00000536218 GPC4O75487 556 aa13.84□□□□□ -0.19
LIG1-203ENST00000536218 SRP72O76094 671 aaKnown RBP13.84□□□□□ -0.19
LIG1-203ENST00000536218 INMTO95050 263 aa13.84□□□□□ -0.19
LIG1-203ENST00000536218 SERPINB10P48595 397 aa13.84□□□□□ -0.19
LIG1-203ENST00000536218 ALDH7A1P49419 539 aaKnown RBP13.84□□□□□ -0.19
LIG1-203ENST00000536218 MPP1Q00013 466 aa13.84□□□□□ -0.19
LIG1-203ENST00000536218 DSC1Q08554 894 aa13.84□□□□□ -0.19
LIG1-203ENST00000536218 NIPAL4Q0D2K0 466 aa13.84□□□□□ -0.19
LIG1-203ENST00000536218 POU6F1Q14863 301 aa13.84□□□□□ -0.19
LIG1-203ENST00000536218 DGUOKQ16854 277 aa13.84□□□□□ -0.19
LIG1-203ENST00000536218 ZFP69Q49AA0 526 aa13.84□□□□□ -0.19
LIG1-203ENST00000536218 STEAP4Q687X5 459 aa13.84□□□□□ -0.19
LIG1-203ENST00000536218 LHX8Q68G74 356 aa13.84□□□□□ -0.19
LIG1-203ENST00000536218 IFNEQ86WN2 208 aa13.84□□□□□ -0.19
LIG1-203ENST00000536218 CCDC28AQ8IWP9 274 aa13.84□□□□□ -0.19
LIG1-203ENST00000536218 GALNT12Q8IXK2 581 aa13.84□□□□□ -0.19
LIG1-203ENST00000536218 SCYL1Q96KG9 808 aa13.84□□□□□ -0.19
LIG1-203ENST00000536218 DHRS9Q9BPW9 319 aa13.84□□□□□ -0.19
LIG1-203ENST00000536218 RUBCNLQ9H714 662 aa13.84□□□□□ -0.19
LIG1-203ENST00000536218 IL37Q9NZH6 218 aa13.84□□□□□ -0.19
LIG1-203ENST00000536218 RAD54BQ9Y620 910 aa13.84□□□□□ -0.19
LIG1-203ENST00000536218 HS3ST4Q9Y661 456 aa13.84□□□□□ -0.19
LIG1-203ENST00000536218 CENPXA8MT69 81 aa13.84□□□□□ -0.19
LIG1-203ENST00000536218 TRIM24O15164 1050 aa13.84□□□□□ -0.19
LIG1-203ENST00000536218 ALDH1A2O94788 518 aa13.84□□□□□ -0.19
LIG1-203ENST00000536218 ARNTP27540 789 aa13.84□□□□□ -0.19
LIG1-203ENST00000536218 OXTRP30559 389 aa13.84□□□□□ -0.19
LIG1-203ENST00000536218 FMO4P31512 558 aa13.84□□□□□ -0.19
LIG1-203ENST00000536218 SLC12A1Q13621 1099 aa13.84□□□□□ -0.19
LIG1-203ENST00000536218 INPP5AQ14642 412 aa13.84□□□□□ -0.19
LIG1-203ENST00000536218 PUS10Q3MIT2 529 aaKnown RBP13.84□□□□□ -0.19
LIG1-203ENST00000536218 SLC16A12Q6ZSM3 486 aa13.84□□□□□ -0.19
LIG1-203ENST00000536218 LRRC8DQ7L1W4 858 aa13.84□□□□□ -0.19
LIG1-203ENST00000536218 DCLK2Q8N568 766 aa13.84□□□□□ -0.19
LIG1-203ENST00000536218 TOP1MTQ969P6 601 aa13.84□□□□□ -0.19
LIG1-203ENST00000536218 SDCCAG3Q96C92 435 aa13.84□□□□□ -0.19
LIG1-203ENST00000536218 CENPNQ96H22 339 aaPredicted RBP13.84□□□□□ -0.19
LIG1-203ENST00000536218 ZNF419Q96HQ0 510 aaPredicted RBP13.84□□□□□ -0.19
LIG1-203ENST00000536218 TTYH2Q9BSA4 534 aa13.84□□□□□ -0.19
LIG1-203ENST00000536218 OSBPL2Q9H1P3 480 aa13.84□□□□□ -0.19
LIG1-203ENST00000536218 IARS2Q9NSE4 1012 aaKnown RBP13.84□□□□□ -0.19
LIG1-203ENST00000536218 PCDHB7Q9Y5E2 793 aa13.84□□□□□ -0.19
LIG1-203ENST00000536218 G3V2L1 256 aa13.83□□□□□ -0.19
LIG1-203ENST00000536218 MTSS1O43312 755 aa13.83□□□□□ -0.19
LIG1-203ENST00000536218 SNX2O60749 519 aa13.83□□□□□ -0.19
LIG1-203ENST00000536218 RASAL1O95294 804 aa13.83□□□□□ -0.19
LIG1-203ENST00000536218 KRT6AP02538 564 aa13.83□□□□□ -0.19
LIG1-203ENST00000536218 KRT6BP04259 564 aa13.83□□□□□ -0.19
LIG1-203ENST00000536218 NMBRP28336 390 aa13.83□□□□□ -0.19
LIG1-203ENST00000536218 ITKQ08881 620 aa13.83□□□□□ -0.19
LIG1-203ENST00000536218 FASTKQ14296 549 aaKnown RBP13.83□□□□□ -0.19
LIG1-203ENST00000536218 NFE2Q16621 373 aaPredicted RBP13.83□□□□□ -0.19
LIG1-203ENST00000536218 ARHGAP12Q8IWW6 846 aa13.83□□□□□ -0.19
LIG1-203ENST00000536218 SPARTQ8N0X7 666 aa13.83□□□□□ -0.19
LIG1-203ENST00000536218 ALOXE3Q9BYJ1 711 aa13.83□□□□□ -0.19
LIG1-203ENST00000536218 B3GNT4Q9C0J1 378 aa13.83□□□□□ -0.19
LIG1-203ENST00000536218 CCM2LQ9NUG4 571 aaPredicted RBP13.83□□□□□ -0.19
LIG1-203ENST00000536218 RBM22Q9NW64 420 aaKnown RBP eCLIP13.83□□□□□ -0.19
LIG1-203ENST00000536218 PAQR5Q9NXK6 330 aaPredicted RBP13.83□□□□□ -0.19
LIG1-203ENST00000536218 TRHDEQ9UKU6 1024 aa13.83□□□□□ -0.19
LIG1-203ENST00000536218 A0A096LPK6 155 aa13.83□□□□□ -0.2
LIG1-203ENST00000536218 MOXD2PA6NHM9 499 aa13.83□□□□□ -0.2
LIG1-203ENST00000536218 E9PAM4 449 aa13.83□□□□□ -0.2
LIG1-203ENST00000536218 TK2O00142 265 aa13.83□□□□□ -0.2
LIG1-203ENST00000536218 NBNO60934 754 aa13.83□□□□□ -0.2
LIG1-203ENST00000536218 UGT2B11O75310 529 aa13.83□□□□□ -0.2
LIG1-203ENST00000536218 HSPA1AP0DMV8 641 aaKnown RBP13.83□□□□□ -0.2
LIG1-203ENST00000536218 HSPA1BP0DMV9 641 aaKnown RBP13.83□□□□□ -0.2
LIG1-203ENST00000536218 SHMT2P34897 504 aa13.83□□□□□ -0.2
LIG1-203ENST00000536218 HADHAP40939 763 aa13.83□□□□□ -0.2
LIG1-203ENST00000536218 ATN1P54259 1190 aaPredicted RBP13.83□□□□□ -0.2
LIG1-203ENST00000536218 ATP6AP1Q15904 470 aa13.83□□□□□ -0.2
LIG1-203ENST00000536218 PSMD5Q16401 504 aa13.83□□□□□ -0.2
LIG1-203ENST00000536218 GIPC2Q8TF65 315 aa13.83□□□□□ -0.2
LIG1-203ENST00000536218 PMEPA1Q969W9 287 aa13.83□□□□□ -0.2
LIG1-203ENST00000536218 SCLYQ96I15 445 aa13.83□□□□□ -0.2
LIG1-203ENST00000536218 NAT9Q9BTE0 207 aa13.83□□□□□ -0.2
LIG1-203ENST00000536218 SMOC2Q9H3U7 446 aa13.83□□□□□ -0.2
LIG1-203ENST00000536218 NMRAL1Q9HBL8 299 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms