RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 LINGO1Q96FE5 620 aa2.69□□□□□ -1.98
CD44-238ENST00000534296 STAMBPL1Q96FJ0 436 aa2.69□□□□□ -1.98
CD44-238ENST00000534296 GRAMD2BQ96HH9 432 aa2.69□□□□□ -1.98
CD44-238ENST00000534296 ABHD8Q96I13 439 aa2.69□□□□□ -1.98
CD44-238ENST00000534296 C1QTNF5Q9BXJ0 243 aa2.69□□□□□ -1.98
CD44-238ENST00000534296 ITPAQ9BY32 194 aa2.69□□□□□ -1.98
CD44-238ENST00000534296 LRMDAQ9H2I8 198 aa2.69□□□□□ -1.98
CD44-238ENST00000534296 KCNN2Q9H2S1 579 aa2.69□□□□□ -1.98
CD44-238ENST00000534296 OGFRQ9NZT2 677 aa2.69□□□□□ -1.98
CD44-238ENST00000534296 MRPL15Q9P015 296 aaKnown RBP2.69□□□□□ -1.98
CD44-238ENST00000534296 STK26Q9P289 416 aa2.69□□□□□ -1.98
CD44-238ENST00000534296 MARCH4Q9P2E8 410 aaPredicted RBP2.69□□□□□ -1.98
CD44-238ENST00000534296 CHORDC1Q9UHD1 332 aaPredicted RBP2.69□□□□□ -1.98
CD44-238ENST00000534296 FBXW11Q9UKB1 542 aa2.69□□□□□ -1.98
CD44-238ENST00000534296 PPIEQ9UNP9 301 aaKnown RBP2.69□□□□□ -1.98
CD44-238ENST00000534296 TTLL3Q9Y4R7 772 aa2.69□□□□□ -1.98
CD44-238ENST00000534296 RUSC2Q8N2Y8 1516 aa2.68□□□□□ -1.98
CD44-238ENST00000534296 LOC100509620A0A075B734 347 aa2.68□□□□□ -1.98
CD44-238ENST00000534296 IGLV5-45A0A087WSX0 123 aa2.68□□□□□ -1.98
CD44-238ENST00000534296 A0A0G2JLW4 131 aa2.68□□□□□ -1.98
CD44-238ENST00000534296 SYNDIG1LA6NDD5 238 aa2.68□□□□□ -1.98
CD44-238ENST00000534296 A8MV72 311 aaPredicted RBP2.68□□□□□ -1.98
CD44-238ENST00000534296 CTDSP2O14595 271 aa2.68□□□□□ -1.98
CD44-238ENST00000534296 MAP2K7O14733 419 aa2.68□□□□□ -1.98
CD44-238ENST00000534296 ANKRD28O15084 1053 aa2.68□□□□□ -1.98
CD44-238ENST00000534296 CLIC2O15247 247 aa2.68□□□□□ -1.98
CD44-238ENST00000534296 HCRTR2O43614 444 aa2.68□□□□□ -1.98
CD44-238ENST00000534296 EDIL3O43854 480 aa2.68□□□□□ -1.98
CD44-238ENST00000534296 PCDH7O60245 1069 aa2.68□□□□□ -1.98
CD44-238ENST00000534296 GAS8-AS1O95177 125 aa2.68□□□□□ -1.98
CD44-238ENST00000534296 IGHV4-39P01824 125 aa2.68□□□□□ -1.98
CD44-238ENST00000534296 INHBAP08476 426 aa2.68□□□□□ -1.98
CD44-238ENST00000534296 CSF2RAP15509 400 aa2.68□□□□□ -1.98
CD44-238ENST00000534296 EIF2DP41214 584 aaKnown RBP2.68□□□□□ -1.98
CD44-238ENST00000534296 EPS8Q12929 822 aa2.68□□□□□ -1.98
CD44-238ENST00000534296 RBM39Q14498 530 aaKnown RBP2.68□□□□□ -1.98
CD44-238ENST00000534296 MRGPRG-AS1Q2M3A8 158 aa2.68□□□□□ -1.98
CD44-238ENST00000534296 CXorf66Q5JRM2 361 aaPredicted RBP2.68□□□□□ -1.98
CD44-238ENST00000534296 SFMBT2Q5VUG0 894 aa2.68□□□□□ -1.98
CD44-238ENST00000534296 PLA2G4FQ68DD2 849 aa2.68□□□□□ -1.98
CD44-238ENST00000534296 C18orf63Q68DL7 685 aa2.68□□□□□ -1.98
CD44-238ENST00000534296 GPR139Q6DWJ6 353 aa2.68□□□□□ -1.98
CD44-238ENST00000534296 KRTAP5-11Q6L8G4 156 aa2.68□□□□□ -1.98
CD44-238ENST00000534296 FAM171BQ6P995 826 aa2.68□□□□□ -1.98
CD44-238ENST00000534296 CEACAM20Q6UY09 585 aa2.68□□□□□ -1.98
CD44-238ENST00000534296 CCDC190Q86UF4 302 aa2.68□□□□□ -1.98
CD44-238ENST00000534296 ARID3BQ8IVW6 561 aaPredicted RBP2.68□□□□□ -1.98
CD44-238ENST00000534296 RNF168Q8IYW5 571 aaPredicted RBP2.68□□□□□ -1.98
CD44-238ENST00000534296 OR8K5Q8NH50 307 aa2.68□□□□□ -1.98
CD44-238ENST00000534296 OR14L1PQ8NHC6 308 aa2.68□□□□□ -1.98
CD44-238ENST00000534296 UTP15Q8TED0 518 aaKnown RBP2.68□□□□□ -1.98
CD44-238ENST00000534296 IGSF8Q969P0 613 aa2.68□□□□□ -1.98
CD44-238ENST00000534296 ERLEC1Q96DZ1 483 aa2.68□□□□□ -1.98
CD44-238ENST00000534296 RSRC1Q96IZ7 334 aaKnown RBP2.68□□□□□ -1.98
CD44-238ENST00000534296 ZNF354BQ96LW1 612 aa2.68□□□□□ -1.98
CD44-238ENST00000534296 WDFY2Q96P53 400 aa2.68□□□□□ -1.98
CD44-238ENST00000534296 TMEM39BQ9GZU3 492 aa2.68□□□□□ -1.98
CD44-238ENST00000534296 GHITMQ9H3K2 345 aa2.68□□□□□ -1.98
CD44-238ENST00000534296 OSGEPL1Q9H4B0 414 aa2.68□□□□□ -1.98
CD44-238ENST00000534296 PLK3Q9H4B4 646 aa2.68□□□□□ -1.98
CD44-238ENST00000534296 MAGIXQ9H6Y5 334 aa2.68□□□□□ -1.98
CD44-238ENST00000534296 POLR1BQ9H9Y6 1135 aa2.68□□□□□ -1.98
CD44-238ENST00000534296 SEBOXQ9HB31 216 aaPredicted RBP2.68□□□□□ -1.98
CD44-238ENST00000534296 TCP11L1Q9NUJ3 509 aa2.68□□□□□ -1.98
CD44-238ENST00000534296 ABI3Q9P2A4 366 aa2.68□□□□□ -1.98
CD44-238ENST00000534296 COPG2Q9UBF2 871 aa2.68□□□□□ -1.98
CD44-238ENST00000534296 TBC1D29Q9UFV1 150 aa2.68□□□□□ -1.98
CD44-238ENST00000534296 RPS6KA6Q9UK32 745 aa2.68□□□□□ -1.98
CD44-238ENST00000534296 SNX8Q9Y5X2 465 aa2.68□□□□□ -1.98
CD44-238ENST00000534296 ZCWPW2A0A1B0GU75 182 aa2.67□□□□□ -1.98
CD44-238ENST00000534296 EIF3DO15371 548 aaKnown RBP eCLIP2.67□□□□□ -1.98
CD44-238ENST00000534296 OGG1O15527 345 aa2.67□□□□□ -1.98
CD44-238ENST00000534296 TGFB1I1O43294 461 aa2.67□□□□□ -1.98
CD44-238ENST00000534296 TPPPO94811 219 aa2.67□□□□□ -1.98
CD44-238ENST00000534296 CGAP01215 116 aa2.67□□□□□ -1.98
CD44-238ENST00000534296 VPREB1P12018 145 aa2.67□□□□□ -1.98
CD44-238ENST00000534296 PAX1P15863 534 aa2.67□□□□□ -1.98
CD44-238ENST00000534296 HOXD13P35453 343 aa2.67□□□□□ -1.98
CD44-238ENST00000534296 ACTN2P35609 894 aa2.67□□□□□ -1.98
CD44-238ENST00000534296 KRT20P35900 424 aa2.67□□□□□ -1.98
CD44-238ENST00000534296 CLDN20P56880 219 aa2.67□□□□□ -1.98
CD44-238ENST00000534296 HILS1P60008 231 aa2.67□□□□□ -1.98
CD44-238ENST00000534296 COG7P83436 770 aa2.67□□□□□ -1.98
CD44-238ENST00000534296 KCNC3Q14003 757 aa2.67□□□□□ -1.98
CD44-238ENST00000534296 NTRK2Q16620 822 aa2.67□□□□□ -1.98
CD44-238ENST00000534296 KRTAP24-1Q3LI83 254 aa2.67□□□□□ -1.98
CD44-238ENST00000534296 ZNF805Q5CZA5 627 aa2.67□□□□□ -1.98
CD44-238ENST00000534296 HIST2H2BCQ6DN03 193 aa2.67□□□□□ -1.98
CD44-238ENST00000534296 HIST2H2BDQ6DRA6 164 aa2.67□□□□□ -1.98
CD44-238ENST00000534296 SLC35E4Q6ICL7 350 aa2.67□□□□□ -1.98
CD44-238ENST00000534296 ZNF280DQ6N043 979 aa2.67□□□□□ -1.98
CD44-238ENST00000534296 SLC27A1Q6PCB7 646 aa2.67□□□□□ -1.98
CD44-238ENST00000534296 C16orf54Q6UWD8 224 aa2.67□□□□□ -1.98
CD44-238ENST00000534296 SEPT14Q6ZU15 432 aa2.67□□□□□ -1.98
CD44-238ENST00000534296 BRINP3Q76B58 766 aa2.67□□□□□ -1.98
CD44-238ENST00000534296 SZRD1Q7Z422 152 aa2.67□□□□□ -1.98
CD44-238ENST00000534296 LONP2Q86WA8 852 aa2.67□□□□□ -1.98
CD44-238ENST00000534296 TMPRSS12Q86WS5 348 aa2.67□□□□□ -1.98
CD44-238ENST00000534296 WDSUB1Q8N9V3 476 aa2.67□□□□□ -1.98
CD44-238ENST00000534296 OR10V1Q8NGI7 309 aa2.67□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms