RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 IRGCQ6NXR0 463 aa14.49□□□□□ -0.09
VPS28-215ENST00000531924 CYB5D1Q6P9G0 228 aa14.49□□□□□ -0.09
VPS28-215ENST00000531924 KLHL35Q6PF15 583 aa14.49□□□□□ -0.09
VPS28-215ENST00000531924 ABRAXAS1Q6UWZ7 409 aa14.49□□□□□ -0.09
VPS28-215ENST00000531924 AMZ2Q86W34 360 aa14.49□□□□□ -0.09
VPS28-215ENST00000531924 RASGRP3Q8IV61 690 aa14.49□□□□□ -0.09
VPS28-215ENST00000531924 RCOR2Q8IZ40 523 aa14.49□□□□□ -0.09
VPS28-215ENST00000531924 IPMKQ8NFU5 416 aa14.49□□□□□ -0.09
VPS28-215ENST00000531924 BLOC1S5Q8TDH9 187 aa14.49□□□□□ -0.09
VPS28-215ENST00000531924 VAT1Q99536 393 aa14.49□□□□□ -0.09
VPS28-215ENST00000531924 FSD1LQ9BXM9 530 aa14.49□□□□□ -0.09
VPS28-215ENST00000531924 LUC7LQ9NQ29 371 aaKnown RBP14.49□□□□□ -0.09
VPS28-215ENST00000531924 IL17BQ9UHF5 180 aa14.49□□□□□ -0.09
VPS28-215ENST00000531924 TMEM184BQ9Y519 407 aaPredicted RBP14.49□□□□□ -0.09
VPS28-215ENST00000531924 PCDHB3Q9Y5E6 796 aa14.49□□□□□ -0.09
VPS28-215ENST00000531924 BOD1L1Q8NFC6 3051 aa14.49□□□□□ -0.09
VPS28-215ENST00000531924 GLYATL1P3A0A0U1RQE8 302 aa14.48□□□□□ -0.09
VPS28-215ENST00000531924 LOC101059948A0A1B0GTJ6 334 aa14.48□□□□□ -0.09
VPS28-215ENST00000531924 OR52A4PA6NMU1 304 aa14.48□□□□□ -0.09
VPS28-215ENST00000531924 SUV39H1O43463 412 aa14.48□□□□□ -0.09
VPS28-215ENST00000531924 C9P02748 559 aa14.48□□□□□ -0.09
VPS28-215ENST00000531924 PECAM1P16284 738 aaPredicted RBP14.48□□□□□ -0.09
VPS28-215ENST00000531924 TCN2P20062 427 aa14.48□□□□□ -0.09
VPS28-215ENST00000531924 AKT1P31749 480 aa14.48□□□□□ -0.09
VPS28-215ENST00000531924 WASHC5Q12768 1159 aa14.48□□□□□ -0.09
VPS28-215ENST00000531924 SEPT6Q14141 434 aa14.48□□□□□ -0.09
VPS28-215ENST00000531924 GPR18Q14330 331 aa14.48□□□□□ -0.09
VPS28-215ENST00000531924 NOMO1Q15155 1222 aa14.48□□□□□ -0.09
VPS28-215ENST00000531924 TCEAL1Q15170 157 aa14.48□□□□□ -0.09
VPS28-215ENST00000531924 SPA17Q15506 151 aa14.48□□□□□ -0.09
VPS28-215ENST00000531924 LDLRAP1Q5SW96 308 aa14.48□□□□□ -0.09
VPS28-215ENST00000531924 CACHD1Q5VU97 1274 aa14.48□□□□□ -0.09
VPS28-215ENST00000531924 C16orf46Q6P387 395 aa14.48□□□□□ -0.09
VPS28-215ENST00000531924 C6orf15Q6UXA7 325 aaPredicted RBP14.48□□□□□ -0.09
VPS28-215ENST00000531924 FAM151BQ6UXP7 276 aa14.48□□□□□ -0.09
VPS28-215ENST00000531924 WASH2PQ6VEQ5 465 aa14.48□□□□□ -0.09
VPS28-215ENST00000531924 TIPARPQ7Z3E1 657 aaKnown RBP14.48□□□□□ -0.09
VPS28-215ENST00000531924 GLT6D1Q7Z4J2 308 aa14.48□□□□□ -0.09
VPS28-215ENST00000531924 ZNF547Q8IVP9 402 aa14.48□□□□□ -0.09
VPS28-215ENST00000531924 STARD8Q92502 1023 aa14.48□□□□□ -0.09
VPS28-215ENST00000531924 HAUS1Q96CS2 278 aa14.48□□□□□ -0.09
VPS28-215ENST00000531924 STAMBPL1Q96FJ0 436 aa14.48□□□□□ -0.09
VPS28-215ENST00000531924 RBM41Q96IZ5 413 aaKnown RBP14.48□□□□□ -0.09
VPS28-215ENST00000531924 ELMO2Q96JJ3 720 aa14.48□□□□□ -0.09
VPS28-215ENST00000531924 OR6C1Q96RD1 312 aa14.48□□□□□ -0.09
VPS28-215ENST00000531924 SLC40A1Q9NP59 571 aa14.48□□□□□ -0.09
VPS28-215ENST00000531924 IL26Q9NPH9 171 aa14.48□□□□□ -0.09
VPS28-215ENST00000531924 WASH6PQ9NQA3 447 aa14.48□□□□□ -0.09
VPS28-215ENST00000531924 RSPH14Q9UHP6 348 aa14.48□□□□□ -0.09
VPS28-215ENST00000531924 TUBD1Q9UJT1 453 aa14.48□□□□□ -0.09
VPS28-215ENST00000531924 TRHDEQ9UKU6 1024 aa14.48□□□□□ -0.09
VPS28-215ENST00000531924 ALG6Q9Y672 507 aa14.48□□□□□ -0.09
VPS28-215ENST00000531924 SLC30A1Q9Y6M5 507 aa14.48□□□□□ -0.09
VPS28-215ENST00000531924 RPS6KL1Q9Y6S9 549 aa14.48□□□□□ -0.09
VPS28-215ENST00000531924 SDK2Q58EX2 2172 aa14.47□□□□□ -0.09
VPS28-215ENST00000531924 LOC285095A0A1B0GVY8 99 aa14.47□□□□□ -0.09
VPS28-215ENST00000531924 HACD1B0YJ81 288 aa14.47□□□□□ -0.09
VPS28-215ENST00000531924 H7C0C1 242 aa14.47□□□□□ -0.09
VPS28-215ENST00000531924 STX7O15400 261 aaKnown RBP14.47□□□□□ -0.09
VPS28-215ENST00000531924 POP7O75817 140 aaKnown RBP14.47□□□□□ -0.09
VPS28-215ENST00000531924 CCNYL3P0C7X3 344 aa14.47□□□□□ -0.09
VPS28-215ENST00000531924 HLA-DPA1P20036 260 aa14.47□□□□□ -0.09
VPS28-215ENST00000531924 CAPZBP47756 277 aa14.47□□□□□ -0.09
VPS28-215ENST00000531924 ATP5OP48047 213 aa14.47□□□□□ -0.09
VPS28-215ENST00000531924 LEPRP48357 1165 aaKnown RBP14.47□□□□□ -0.09
VPS28-215ENST00000531924 ARL4DP49703 201 aa14.47□□□□□ -0.09
VPS28-215ENST00000531924 CDC20Q12834 499 aa14.47□□□□□ -0.09
VPS28-215ENST00000531924 MPP3Q13368 585 aa14.47□□□□□ -0.09
VPS28-215ENST00000531924 ITGA9Q13797 1035 aa14.47□□□□□ -0.09
VPS28-215ENST00000531924 MAP7Q14244 749 aa14.47□□□□□ -0.09
VPS28-215ENST00000531924 IL11RAQ14626 422 aa14.47□□□□□ -0.09
VPS28-215ENST00000531924 PLCL1Q15111 1095 aa14.47□□□□□ -0.09
VPS28-215ENST00000531924 CHRNA6Q15825 494 aa14.47□□□□□ -0.09
VPS28-215ENST00000531924 TAZQ16635 292 aa14.47□□□□□ -0.09
VPS28-215ENST00000531924 DEFB109BQ30KR1 87 aa14.47□□□□□ -0.09
VPS28-215ENST00000531924 KHDC1Q4VXA5 237 aaKnown RBP14.47□□□□□ -0.09
VPS28-215ENST00000531924 KDELC1Q6UW63 502 aa14.47□□□□□ -0.09
VPS28-215ENST00000531924 FAM92BQ6ZTR7 304 aa14.47□□□□□ -0.09
VPS28-215ENST00000531924 PTRH1Q86Y79 214 aaKnown RBP14.47□□□□□ -0.09
VPS28-215ENST00000531924 KATNAL2Q8IYT4 538 aa14.47□□□□□ -0.09
VPS28-215ENST00000531924 ZNF567Q8N184 647 aa14.47□□□□□ -0.09
VPS28-215ENST00000531924 FCRL5Q96RD9 977 aa14.47□□□□□ -0.09
VPS28-215ENST00000531924 SPRY4Q9C004 299 aa14.47□□□□□ -0.09
VPS28-215ENST00000531924 ZNF768Q9H5H4 540 aaKnown RBP14.47□□□□□ -0.09
VPS28-215ENST00000531924 OGFRQ9NZT2 677 aa14.47□□□□□ -0.09
VPS28-215ENST00000531924 LNPEPQ9UIQ6 1025 aa14.47□□□□□ -0.09
VPS28-215ENST00000531924 SPTA1P02549 2419 aa14.47□□□□□ -0.09
VPS28-215ENST00000531924 MACROD2A1Z1Q3 448 aa14.46□□□□□ -0.09
VPS28-215ENST00000531924 BUD23O43709 281 aaKnown RBP14.46□□□□□ -0.09
VPS28-215ENST00000531924 UGT1A9O60656 530 aa14.46□□□□□ -0.09
VPS28-215ENST00000531924 KATNA1O75449 491 aa14.46□□□□□ -0.09
VPS28-215ENST00000531924 NDUFA10O95299 355 aa14.46□□□□□ -0.09
VPS28-215ENST00000531924 BRAFP15056 766 aa14.46□□□□□ -0.09
VPS28-215ENST00000531924 UGT1A6P19224 532 aa14.46□□□□□ -0.09
VPS28-215ENST00000531924 MSH3P20585 1137 aa14.46□□□□□ -0.09
VPS28-215ENST00000531924 UGT1A1P22309 533 aa14.46□□□□□ -0.09
VPS28-215ENST00000531924 UGT1A4P22310 534 aa14.46□□□□□ -0.09
VPS28-215ENST00000531924 CTNNA2P26232 953 aa14.46□□□□□ -0.09
VPS28-215ENST00000531924 PBLDP30039 288 aaPredicted RBP14.46□□□□□ -0.09
VPS28-215ENST00000531924 CD68P34810 354 aaPredicted RBP14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms