RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 SPAG4Q9NPE6 437 aa3.28□□□□□ -1.88
CD44-229ENST00000528672 HINT3Q9NQE9 182 aaKnown RBP3.28□□□□□ -1.88
CD44-229ENST00000528672 DDX4Q9NQI0 724 aaKnown RBP3.28□□□□□ -1.88
CD44-229ENST00000528672 CYSLTR2Q9NS75 346 aa3.28□□□□□ -1.88
CD44-229ENST00000528672 ADPRHL2Q9NX46 363 aa3.28□□□□□ -1.88
CD44-229ENST00000528672 CISD1Q9NZ45 108 aaKnown RBP3.28□□□□□ -1.88
CD44-229ENST00000528672 MSRB1Q9NZV6 116 aa3.28□□□□□ -1.88
CD44-229ENST00000528672 LARSQ9P2J5 1176 aaKnown RBP3.28□□□□□ -1.88
CD44-229ENST00000528672 UBA2Q9UBT2 640 aaPredicted RBP3.28□□□□□ -1.88
CD44-229ENST00000528672 OR14J1Q9UGF5 321 aa3.28□□□□□ -1.88
CD44-229ENST00000528672 IL17BQ9UHF5 180 aa3.28□□□□□ -1.88
CD44-229ENST00000528672 TSPYL4Q9UJ04 414 aa3.28□□□□□ -1.88
CD44-229ENST00000528672 WBP11Q9Y2W2 641 aaKnown RBP3.28□□□□□ -1.88
CD44-229ENST00000528672 NOSIPQ9Y314 301 aaKnown RBP3.28□□□□□ -1.88
CD44-229ENST00000528672 LIPGQ9Y5X9 500 aa3.28□□□□□ -1.88
CD44-229ENST00000528672 SEC23IPQ9Y6Y8 1000 aaKnown RBP3.28□□□□□ -1.88
CD44-229ENST00000528672 ABCC9O60706 1549 aa3.28□□□□□ -1.88
CD44-229ENST00000528672 ZNF804BA4D1E1 1349 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 KIR2DS5A0A0G2JLQ3 304 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 KANSL1LA0AUZ9 987 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 WDR91A4D1P6 747 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 ANXA2P2A6NMY6 339 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 F8W810 466 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 KIR2DS3K7RE56 304 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 DNM1LO00429 736 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 PLOD2O00469 737 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 PPP6CO00743 305 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 SMAD9O15198 467 aaKnown RBP3.27□□□□□ -1.89
CD44-229ENST00000528672 NEMFO60524 1076 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 BCAR3O75815 825 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 NDUFB4O95168 129 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 MT-ND3P03897 115 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 ICAM1P05362 532 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 KRT13P13646 458 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 PDGFRAP16234 1089 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 PRLRP16471 622 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 ZNF24P17028 368 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 DESP17661 470 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 CD58P19256 250 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 ACHEP22303 614 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 UBA1P22314 1058 aaKnown RBP3.27□□□□□ -1.89
CD44-229ENST00000528672 DNASE1P24855 282 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 CHATP28329 748 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 HOXC9P31274 260 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 PCGF2P35227 344 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 PRKCIP41743 596 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 RFX5P48382 616 aaPredicted RBP3.27□□□□□ -1.89
CD44-229ENST00000528672 MXI1P50539 228 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 LIMK1P53667 647 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 CDH13P55290 713 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 SSBP2P81877 361 aaPredicted RBP3.27□□□□□ -1.89
CD44-229ENST00000528672 PPP2R2BQ00005 443 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 FAM27E3Q08E93 113 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 AP1B1Q10567 949 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 SREBF2Q12772 1141 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 GRIK2Q13002 908 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 COASYQ13057 564 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 PPIGQ13427 754 aaKnown RBP eCLIP3.27□□□□□ -1.89
CD44-229ENST00000528672 TUBB2AQ13885 445 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 NEDD9Q14511 834 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 SMTNL2Q2TAL5 461 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 SMU1Q2TAY7 513 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 SLC9C1Q4G0N8 1177 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 DCAF6Q58WW2 860 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 CCDC122Q5T0U0 273 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 GGNBP1Q5YKI7 109 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 AP1ARQ63HQ0 302 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 TMEM211Q6ICI0 200 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 HEPHL1Q6MZM0 1159 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 METTL2BQ6P1Q9 378 aaKnown RBP3.27□□□□□ -1.89
CD44-229ENST00000528672 TMEM71Q6P5X7 295 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 PPP1R21Q6ZMI0 780 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 INTS8Q75QN2 995 aaKnown RBP3.27□□□□□ -1.89
CD44-229ENST00000528672 BTN2A1Q7KYR7 527 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 TRILQ7L0X0 811 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 CACNA2D4Q7Z3S7 1137 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 C1QL2Q7Z5L3 287 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 CENPVQ7Z7K6 275 aaPredicted RBP3.27□□□□□ -1.89
CD44-229ENST00000528672 ADIPOR2Q86V24 386 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 CAMK1DQ8IU85 385 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 SFTPA2Q8IWL1 248 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 TUSC5Q8IXB3 177 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 DCLK2Q8N568 766 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 AGBL3Q8NEM8 1001 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 CTCFLQ8NI51 663 aaPredicted RBP3.27□□□□□ -1.89
CD44-229ENST00000528672 CEP76Q8TAP6 659 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 GPT2Q8TD30 523 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 ZNF606Q8WXB4 792 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 PTP4A1Q93096 173 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 MR1Q95460 341 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 SPACA9Q96E40 222 aaPredicted RBP3.27□□□□□ -1.89
CD44-229ENST00000528672 METTL2AQ96IZ6 378 aaKnown RBP3.27□□□□□ -1.89
CD44-229ENST00000528672 ZNF558Q96NG5 402 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 DACH2Q96NX9 599 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 NEK1Q96PY6 1258 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 EGFL8Q99944 293 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 TUBB2BQ9BVA1 445 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 UTP14AQ9BVJ6 771 aaKnown RBP3.27□□□□□ -1.89
CD44-229ENST00000528672 B3GNT4Q9C0J1 378 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 NPFFR1Q9GZQ6 430 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms