RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 ACTRT2Q8TDY3 377 aa20.44■□□□□ 0.86
VPS28-209ENST00000528142 CMTM5Q96DZ9 223 aa20.44■□□□□ 0.86
VPS28-209ENST00000528142 SPATS2LQ9NUQ6 558 aaKnown RBP20.44■□□□□ 0.86
VPS28-209ENST00000528142 SMOXQ9NWM0 555 aa20.44■□□□□ 0.86
VPS28-209ENST00000528142 CD84Q9UIB8 345 aa20.44■□□□□ 0.86
VPS28-209ENST00000528142 NCF1BA6NI72 391 aaPredicted RBP20.43■□□□□ 0.86
VPS28-209ENST00000528142 NCF1CA8MVU1 366 aaPredicted RBP20.43■□□□□ 0.86
VPS28-209ENST00000528142 SLC22A2O15244 555 aa20.43■□□□□ 0.86
VPS28-209ENST00000528142 NCF1P14598 390 aaPredicted RBP20.43■□□□□ 0.86
VPS28-209ENST00000528142 DGKAP23743 735 aa20.43■□□□□ 0.86
VPS28-209ENST00000528142 NFKBIAP25963 317 aa20.43■□□□□ 0.86
VPS28-209ENST00000528142 CPOXP36551 454 aa20.43■□□□□ 0.86
VPS28-209ENST00000528142 AGTR2P50052 363 aa20.43■□□□□ 0.86
VPS28-209ENST00000528142 MNAT1P51948 309 aa20.43■□□□□ 0.86
VPS28-209ENST00000528142 HNRNPA1L2Q32P51 320 aaKnown RBP20.43■□□□□ 0.86
VPS28-209ENST00000528142 ACSBG2Q5FVE4 666 aa20.43■□□□□ 0.86
VPS28-209ENST00000528142 C9orf64Q5T6V5 341 aa20.43■□□□□ 0.86
VPS28-209ENST00000528142 FAM219BQ5XKK7 198 aa20.43■□□□□ 0.86
VPS28-209ENST00000528142 NXNQ6DKJ4 435 aa20.43■□□□□ 0.86
VPS28-209ENST00000528142 SFTPA1Q8IWL2 248 aa20.43■□□□□ 0.86
VPS28-209ENST00000528142 TRPC4APQ8TEL6 797 aa20.43■□□□□ 0.86
VPS28-209ENST00000528142 ZNF483Q8TF39 744 aaPredicted RBP20.43■□□□□ 0.86
VPS28-209ENST00000528142 TTYH1Q9H313 450 aaPredicted RBP20.43■□□□□ 0.86
VPS28-209ENST00000528142 MMADHCQ9H3L0 296 aaPredicted RBP20.43■□□□□ 0.86
VPS28-209ENST00000528142 FAM83DQ9H4H8 585 aa20.43■□□□□ 0.86
VPS28-209ENST00000528142 MID1IP1Q9NPA3 183 aa20.43■□□□□ 0.86
VPS28-209ENST00000528142 NUDT4Q9NZJ9 180 aa20.43■□□□□ 0.86
VPS28-209ENST00000528142 KLHL42Q9P2K6 505 aa20.43■□□□□ 0.86
VPS28-209ENST00000528142 NFKBIL1Q9UBC1 381 aaPredicted RBP20.43■□□□□ 0.86
VPS28-209ENST00000528142 SARDHQ9UL12 918 aa20.43■□□□□ 0.86
VPS28-209ENST00000528142 ADSLP30566 484 aaPredicted RBP20.43■□□□□ 0.86
VPS28-209ENST00000528142 RGS4P49798 205 aa20.43■□□□□ 0.86
VPS28-209ENST00000528142 COPAP53621 1224 aa20.43■□□□□ 0.86
VPS28-209ENST00000528142 LCP2Q13094 533 aa20.43■□□□□ 0.86
VPS28-209ENST00000528142 SNCBQ16143 134 aa20.43■□□□□ 0.86
VPS28-209ENST00000528142 CRY1Q16526 586 aa20.43■□□□□ 0.86
VPS28-209ENST00000528142 POM121L1PQ3SYA9 428 aa20.43■□□□□ 0.86
VPS28-209ENST00000528142 FBXO48Q5FWF7 155 aa20.43■□□□□ 0.86
VPS28-209ENST00000528142 NAIF1Q69YI7 327 aaPredicted RBP20.43■□□□□ 0.86
VPS28-209ENST00000528142 Q6ZVL8 140 aa20.43■□□□□ 0.86
VPS28-209ENST00000528142 CHSY3Q70JA7 882 aa20.43■□□□□ 0.86
VPS28-209ENST00000528142 PARS2Q7L3T8 475 aaKnown RBP20.43■□□□□ 0.86
VPS28-209ENST00000528142 ADAMTSL2Q86TH1 951 aa20.43■□□□□ 0.86
VPS28-209ENST00000528142 PELI3Q8N2H9 469 aa20.43■□□□□ 0.86
VPS28-209ENST00000528142 SCAMP4Q969E2 229 aa20.43■□□□□ 0.86
VPS28-209ENST00000528142 PLA2G2FQ9BZM2 168 aa20.43■□□□□ 0.86
VPS28-209ENST00000528142 ABCG8Q9H221 673 aa20.43■□□□□ 0.86
VPS28-209ENST00000528142 CD274Q9NZQ7 290 aa20.43■□□□□ 0.86
VPS28-209ENST00000528142 BAIAP2L1Q9UHR4 511 aa20.43■□□□□ 0.86
VPS28-209ENST00000528142 PCTPQ9UKL6 214 aa20.43■□□□□ 0.86
VPS28-209ENST00000528142 COX4I1P13073 169 aa20.42■□□□□ 0.86
VPS28-209ENST00000528142 PIK3R1P27986 724 aa20.42■□□□□ 0.86
VPS28-209ENST00000528142 MMP12P39900 470 aa20.42■□□□□ 0.86
VPS28-209ENST00000528142 OPRD1P41143 372 aa20.42■□□□□ 0.86
VPS28-209ENST00000528142 PPP1R3AQ16821 1122 aa20.42■□□□□ 0.86
VPS28-209ENST00000528142 FNDC3BQ53EP0 1204 aaKnown RBP20.42■□□□□ 0.86
VPS28-209ENST00000528142 TECPR1Q7Z6L1 1165 aa20.42■□□□□ 0.86
VPS28-209ENST00000528142 TERB1Q8NA31 727 aa20.42■□□□□ 0.86
VPS28-209ENST00000528142 AGAP11Q8TF27 550 aa20.42■□□□□ 0.86
VPS28-209ENST00000528142 LENG8Q96PV6 779 aaPredicted RBP20.42■□□□□ 0.86
VPS28-209ENST00000528142 SPATA16Q9BXB7 569 aa20.42■□□□□ 0.86
VPS28-209ENST00000528142 TMEM245Q9H330 911 aa20.42■□□□□ 0.86
VPS28-209ENST00000528142 NSUN3Q9H649 340 aaKnown RBP20.42■□□□□ 0.86
VPS28-209ENST00000528142 ZBTB26Q9HCK0 441 aa20.42■□□□□ 0.86
VPS28-209ENST00000528142 DNAJC15Q9Y5T4 150 aa20.42■□□□□ 0.86
VPS28-209ENST00000528142 A0A1B0GTL3 188 aa20.41■□□□□ 0.86
VPS28-209ENST00000528142 EDDM13A0A1B0GTR0 161 aa20.41■□□□□ 0.86
VPS28-209ENST00000528142 RGSL1A5PLK6 1076 aa20.41■□□□□ 0.86
VPS28-209ENST00000528142 MAGEC1O60732 1142 aa20.41■□□□□ 0.86
VPS28-209ENST00000528142 SNX2O60749 519 aa20.41■□□□□ 0.86
VPS28-209ENST00000528142 WFS1O76024 890 aa20.41■□□□□ 0.86
VPS28-209ENST00000528142 PRNPP04156 253 aa20.41■□□□□ 0.86
VPS28-209ENST00000528142 HLA-EP13747 358 aa20.41■□□□□ 0.86
VPS28-209ENST00000528142 CD1EP15812 388 aa20.41■□□□□ 0.86
VPS28-209ENST00000528142 XPAP23025 273 aaPredicted RBP20.41■□□□□ 0.86
VPS28-209ENST00000528142 ETV3P41162 512 aa20.41■□□□□ 0.86
VPS28-209ENST00000528142 RUNX3Q13761 415 aa20.41■□□□□ 0.86
VPS28-209ENST00000528142 DNAL1Q4LDG9 190 aa20.41■□□□□ 0.86
VPS28-209ENST00000528142 KANK2Q63ZY3 851 aa20.41■□□□□ 0.86
VPS28-209ENST00000528142 MYO1HQ8N1T3 1032 aa20.41■□□□□ 0.86
VPS28-209ENST00000528142 TMIEQ8NEW7 156 aa20.41■□□□□ 0.86
VPS28-209ENST00000528142 MCUR1Q96AQ8 359 aa20.41■□□□□ 0.86
VPS28-209ENST00000528142 CATSPER2Q96P56 530 aa20.41■□□□□ 0.86
VPS28-209ENST00000528142 PANX3Q96QZ0 392 aa20.41■□□□□ 0.86
VPS28-209ENST00000528142 MYADMQ96S97 322 aa20.41■□□□□ 0.86
VPS28-209ENST00000528142 RAD18Q9NS91 495 aa20.41■□□□□ 0.86
VPS28-209ENST00000528142 MBD1Q9UIS9 605 aaPredicted RBP20.41■□□□□ 0.86
VPS28-209ENST00000528142 PPM1HQ9ULR3 514 aa20.41■□□□□ 0.86
VPS28-209ENST00000528142 G3BP2Q9UN86 482 aaKnown RBP20.41■□□□□ 0.86
VPS28-209ENST00000528142 ASB1Q9Y576 335 aa20.41■□□□□ 0.86
VPS28-209ENST00000528142 LOC100653049A0A140TA62 436 aa20.41■□□□□ 0.86
VPS28-209ENST00000528142 AZIN1O14977 448 aa20.41■□□□□ 0.86
VPS28-209ENST00000528142 KRT34O76011 436 aa20.41■□□□□ 0.86
VPS28-209ENST00000528142 PGM1P36871 562 aa20.41■□□□□ 0.86
VPS28-209ENST00000528142 FOXA1P55317 472 aa20.41■□□□□ 0.86
VPS28-209ENST00000528142 ZNF234Q14588 700 aa20.41■□□□□ 0.86
VPS28-209ENST00000528142 HENMT1Q5T8I9 393 aaKnown RBP20.41■□□□□ 0.86
VPS28-209ENST00000528142 LIPIQ6XZB0 460 aa20.41■□□□□ 0.86
VPS28-209ENST00000528142 CPA6Q8N4T0 437 aa20.41■□□□□ 0.86
VPS28-209ENST00000528142 TRAM1L1Q8N609 369 aa20.41■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms