RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 CXorf40BQ96DE9 158 aa23.14■■□□□ 1.29
CPSF1-202ENST00000527827 ZDHHC12Q96GR4 267 aa23.14■■□□□ 1.29
CPSF1-202ENST00000527827 AGAP3Q96P47 875 aa23.14■■□□□ 1.29
CPSF1-202ENST00000527827 TWSG1Q9GZX9 223 aa23.14■■□□□ 1.29
CPSF1-202ENST00000527827 RAB33BQ9H082 229 aa23.14■■□□□ 1.29
CPSF1-202ENST00000527827 SLC25A51Q9H1U9 297 aa23.14■■□□□ 1.29
CPSF1-202ENST00000527827 TRIM10Q9UDY6 481 aa23.14■■□□□ 1.29
CPSF1-202ENST00000527827 WDR37Q9Y2I8 494 aa23.14■■□□□ 1.29
CPSF1-202ENST00000527827 HEY1Q9Y5J3 304 aa23.14■■□□□ 1.29
CPSF1-202ENST00000527827 SPO11Q9Y5K1 396 aa23.14■■□□□ 1.29
CPSF1-202ENST00000527827 SPTBN1Q01082 2364 aaKnown RBP23.13■■□□□ 1.29
CPSF1-202ENST00000527827 PIPSLA2A3N6 862 aa23.13■■□□□ 1.29
CPSF1-202ENST00000527827 AURKAO14965 403 aa23.13■■□□□ 1.29
CPSF1-202ENST00000527827 PDGFAP04085 211 aa23.13■■□□□ 1.29
CPSF1-202ENST00000527827 CCNYL3P0C7X3 344 aa23.13■■□□□ 1.29
CPSF1-202ENST00000527827 FANCCQ00597 558 aa23.13■■□□□ 1.29
CPSF1-202ENST00000527827 AP1B1Q10567 949 aa23.13■■□□□ 1.29
CPSF1-202ENST00000527827 ZFYVE27Q5T4F4 411 aa23.13■■□□□ 1.29
CPSF1-202ENST00000527827 SLC9A4Q6AI14 798 aa23.13■■□□□ 1.29
CPSF1-202ENST00000527827 LURAP1LQ8IV03 231 aa23.13■■□□□ 1.29
CPSF1-202ENST00000527827 VPS35Q96QK1 796 aa23.13■■□□□ 1.29
CPSF1-202ENST00000527827 PACSIN1Q9BY11 444 aa23.13■■□□□ 1.29
CPSF1-202ENST00000527827 LHX9Q9NQ69 397 aa23.13■■□□□ 1.29
CPSF1-202ENST00000527827 SEMA5BQ9P283 1151 aa23.13■■□□□ 1.29
CPSF1-202ENST00000527827 BLACEA4D250 179 aa23.12■■□□□ 1.29
CPSF1-202ENST00000527827 C3orf70A6NLC5 250 aaPredicted RBP23.12■■□□□ 1.29
CPSF1-202ENST00000527827 MT-ND3P03897 115 aa23.12■■□□□ 1.29
CPSF1-202ENST00000527827 TMEM115Q12893 351 aaPredicted RBP23.12■■□□□ 1.29
CPSF1-202ENST00000527827 SLC14A2Q15849 920 aa23.12■■□□□ 1.29
CPSF1-202ENST00000527827 ATP13A5Q4VNC0 1218 aa23.12■■□□□ 1.29
CPSF1-202ENST00000527827 ATCAYQ86WG3 371 aa23.12■■□□□ 1.29
CPSF1-202ENST00000527827 APLFQ8IW19 511 aaPredicted RBP23.12■■□□□ 1.29
CPSF1-202ENST00000527827 SPATA22Q8NHS9 363 aa23.12■■□□□ 1.29
CPSF1-202ENST00000527827 SLC41A2Q96JW4 573 aa23.12■■□□□ 1.29
CPSF1-202ENST00000527827 OLFM3Q96PB7 478 aa23.12■■□□□ 1.29
CPSF1-202ENST00000527827 AKIRIN1Q9H9L7 192 aaPredicted RBP23.12■■□□□ 1.29
CPSF1-202ENST00000527827 LUC7L2Q9Y383 392 aaKnown RBP23.12■■□□□ 1.29
CPSF1-202ENST00000527827 ICE1Q9Y2F5 2266 aa23.12■■□□□ 1.29
CPSF1-202ENST00000527827 TEX15Q9BXT5 2789 aa23.11■■□□□ 1.29
CPSF1-202ENST00000527827 IGHV5-51A0A0C4DH38 117 aa23.11■■□□□ 1.29
CPSF1-202ENST00000527827 LRRD1A4D1F6 860 aa23.11■■□□□ 1.29
CPSF1-202ENST00000527827 ZNF487B1APH4 448 aa23.11■■□□□ 1.29
CPSF1-202ENST00000527827 DNAJB5O75953 348 aa23.11■■□□□ 1.29
CPSF1-202ENST00000527827 NDST3O95803 873 aa23.11■■□□□ 1.29
CPSF1-202ENST00000527827 MT-CYBP00156 380 aaPredicted RBP23.11■■□□□ 1.29
CPSF1-202ENST00000527827 H2AFZP0C0S5 128 aa23.11■■□□□ 1.29
CPSF1-202ENST00000527827 FOLR1P15328 257 aa23.11■■□□□ 1.29
CPSF1-202ENST00000527827 PWWP2BQ6NUJ5 590 aa23.11■■□□□ 1.29
CPSF1-202ENST00000527827 NPNTQ6UXI9 565 aa23.11■■□□□ 1.29
CPSF1-202ENST00000527827 H2AFVQ71UI9 128 aa23.11■■□□□ 1.29
CPSF1-202ENST00000527827 B4GALNT4Q76KP1 1039 aa23.11■■□□□ 1.29
CPSF1-202ENST00000527827 TRAPPC5Q8IUR0 188 aa23.11■■□□□ 1.29
CPSF1-202ENST00000527827 RUFY1Q96T51 708 aa23.11■■□□□ 1.29
CPSF1-202ENST00000527827 TRIM55Q9BYV6 548 aa23.11■■□□□ 1.29
CPSF1-202ENST00000527827 ACTL8Q9H568 366 aa23.11■■□□□ 1.29
CPSF1-202ENST00000527827 CBX8Q9HC52 389 aa23.11■■□□□ 1.29
CPSF1-202ENST00000527827 BPIFA1Q9NP55 256 aa23.11■■□□□ 1.29
CPSF1-202ENST00000527827 MED13Q9UHV7 2174 aa23.1■■□□□ 1.29
CPSF1-202ENST00000527827 C21orf140B9A014 251 aa23.1■■□□□ 1.29
CPSF1-202ENST00000527827 GYPCP04921 128 aa23.1■■□□□ 1.29
CPSF1-202ENST00000527827 CASP14P31944 242 aa23.1■■□□□ 1.29
CPSF1-202ENST00000527827 TUBB3Q13509 450 aa23.1■■□□□ 1.29
CPSF1-202ENST00000527827 SEMA5AQ13591 1074 aa23.1■■□□□ 1.29
CPSF1-202ENST00000527827 KCNAB1Q14722 419 aa23.1■■□□□ 1.29
CPSF1-202ENST00000527827 PDK1Q15118 436 aa23.1■■□□□ 1.29
CPSF1-202ENST00000527827 GPR150Q8NGU9 434 aa23.1■■□□□ 1.29
CPSF1-202ENST00000527827 CTNNBL1Q8WYA6 563 aaPredicted RBP23.1■■□□□ 1.29
CPSF1-202ENST00000527827 GLOD4Q9HC38 313 aa23.1■■□□□ 1.29
CPSF1-202ENST00000527827 PDE7BQ9NP56 450 aa23.1■■□□□ 1.29
CPSF1-202ENST00000527827 LCMT1Q9UIC8 334 aa23.1■■□□□ 1.29
CPSF1-202ENST00000527827 RARRES3Q9UL19 164 aa23.1■■□□□ 1.29
CPSF1-202ENST00000527827 RP1L1Q8IWN7 2480 aaPredicted RBP23.1■■□□□ 1.29
CPSF1-202ENST00000527827 NBPF19A0A087WUL8 3843 aa23.09■■□□□ 1.29
CPSF1-202ENST00000527827 VCLP18206 1134 aa23.09■■□□□ 1.29
CPSF1-202ENST00000527827 FECHP22830 423 aa23.09■■□□□ 1.29
CPSF1-202ENST00000527827 UBASH3AP57075 661 aa23.09■■□□□ 1.29
CPSF1-202ENST00000527827 MESDQ14696 234 aa23.09■■□□□ 1.29
CPSF1-202ENST00000527827 CYB5D1Q6P9G0 228 aa23.09■■□□□ 1.29
CPSF1-202ENST00000527827 CERS6Q6ZMG9 384 aa23.09■■□□□ 1.29
CPSF1-202ENST00000527827 VSIG1Q86XK7 387 aa23.09■■□□□ 1.29
CPSF1-202ENST00000527827 SIDT2Q8NBJ9 832 aaKnown RBP23.09■■□□□ 1.29
CPSF1-202ENST00000527827 UBXN4Q92575 508 aa23.09■■□□□ 1.29
CPSF1-202ENST00000527827 IQCDQ96DY2 449 aa23.09■■□□□ 1.29
CPSF1-202ENST00000527827 FCRL4Q96PJ5 515 aa23.09■■□□□ 1.29
CPSF1-202ENST00000527827 SRPK1Q96SB4 655 aaKnown RBP23.09■■□□□ 1.29
CPSF1-202ENST00000527827 XPO4Q9C0E2 1151 aaKnown RBP23.09■■□□□ 1.29
CPSF1-202ENST00000527827 APOL1O14791 398 aa23.08■■□□□ 1.29
CPSF1-202ENST00000527827 PMPCBO75439 489 aa23.08■■□□□ 1.29
CPSF1-202ENST00000527827 ANP32AP39687 249 aaKnown RBP23.08■■□□□ 1.29
CPSF1-202ENST00000527827 HALP42357 657 aa23.08■■□□□ 1.29
CPSF1-202ENST00000527827 UQCRFS1P47985 274 aa23.08■■□□□ 1.29
CPSF1-202ENST00000527827 DMPKQ09013 629 aa23.08■■□□□ 1.29
CPSF1-202ENST00000527827 GTF2H3Q13889 308 aa23.08■■□□□ 1.29
CPSF1-202ENST00000527827 RPE65Q16518 533 aa23.08■■□□□ 1.29
CPSF1-202ENST00000527827 TEX44Q53QW1 395 aa23.08■■□□□ 1.29
CPSF1-202ENST00000527827 FAM199XQ6PEV8 388 aaPredicted RBP23.08■■□□□ 1.29
CPSF1-202ENST00000527827 LUZP1Q86V48 1076 aa23.08■■□□□ 1.29
CPSF1-202ENST00000527827 GDAP1Q8TB36 358 aa23.08■■□□□ 1.29
CPSF1-202ENST00000527827 TRAF3IP1Q8TDR0 691 aaPredicted RBP23.08■■□□□ 1.29
CPSF1-202ENST00000527827 IL26Q9NPH9 171 aa23.08■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms