RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 GKN1Q9NS71 199 aa21■□□□□ 0.95
VPS28-205ENST00000526204 DHRS7Q9Y394 339 aa21■□□□□ 0.95
VPS28-205ENST00000526204 ADAM12O43184 909 aa20.99■□□□□ 0.95
VPS28-205ENST00000526204 SYNCRIPO60506 623 aaKnown RBP20.99■□□□□ 0.95
VPS28-205ENST00000526204 TSPAN3O60637 253 aa20.99■□□□□ 0.95
VPS28-205ENST00000526204 OR4F21O95013 312 aa20.99■□□□□ 0.95
VPS28-205ENST00000526204 OR1D2P34982 312 aa20.99■□□□□ 0.95
VPS28-205ENST00000526204 CCT8P50990 548 aa20.99■□□□□ 0.95
VPS28-205ENST00000526204 CLCN7P51798 805 aa20.99■□□□□ 0.95
VPS28-205ENST00000526204 PLOD1Q02809 727 aaPredicted RBP20.99■□□□□ 0.95
VPS28-205ENST00000526204 PRKG2Q13237 762 aa20.99■□□□□ 0.95
VPS28-205ENST00000526204 BFSP2Q13515 415 aa20.99■□□□□ 0.95
VPS28-205ENST00000526204 RABL3Q5HYI8 236 aa20.99■□□□□ 0.95
VPS28-205ENST00000526204 PAGE3Q5JUK9 113 aa20.99■□□□□ 0.95
VPS28-205ENST00000526204 TMTC4Q5T4D3 741 aa20.99■□□□□ 0.95
VPS28-205ENST00000526204 C16orf59Q7L2K0 433 aa20.99■□□□□ 0.95
VPS28-205ENST00000526204 ADAMTSL2Q86TH1 951 aa20.99■□□□□ 0.95
VPS28-205ENST00000526204 CDYL2Q8N8U2 506 aa20.99■□□□□ 0.95
VPS28-205ENST00000526204 PAPD5Q8NDF8 572 aaKnown RBP20.99■□□□□ 0.95
VPS28-205ENST00000526204 HIC2Q96JB3 615 aa20.99■□□□□ 0.95
VPS28-205ENST00000526204 FNDC3AQ9Y2H6 1198 aaKnown RBP20.99■□□□□ 0.95
VPS28-205ENST00000526204 SLC30A1Q9Y6M5 507 aa20.99■□□□□ 0.95
VPS28-205ENST00000526204 RNF103-CHMP3A0A140T963 221 aa20.99■□□□□ 0.95
VPS28-205ENST00000526204 TBKBP1A7MCY6 615 aa20.99■□□□□ 0.95
VPS28-205ENST00000526204 INPP4BO15327 924 aa20.99■□□□□ 0.95
VPS28-205ENST00000526204 CD160O95971 181 aa20.99■□□□□ 0.95
VPS28-205ENST00000526204 HMGA1P17096 107 aaKnown RBP20.99■□□□□ 0.95
VPS28-205ENST00000526204 TWF1Q12792 350 aa20.99■□□□□ 0.95
VPS28-205ENST00000526204 PCBP2Q15366 365 aaKnown RBP eCLIP20.99■□□□□ 0.95
VPS28-205ENST00000526204 CMTR2Q8IYT2 770 aaKnown RBP20.99■□□□□ 0.95
VPS28-205ENST00000526204 FAM110BQ8TC76 370 aa20.99■□□□□ 0.95
VPS28-205ENST00000526204 SARS2Q9NP81 518 aaKnown RBP20.99■□□□□ 0.95
VPS28-205ENST00000526204 IL17CQ9P0M4 197 aa20.99■□□□□ 0.95
VPS28-205ENST00000526204 SRRDQ9UH36 339 aa20.99■□□□□ 0.95
VPS28-205ENST00000526204 BACE2Q9Y5Z0 518 aa20.99■□□□□ 0.95
VPS28-205ENST00000526204 CEP350Q5VT06 3117 aa20.99■□□□□ 0.95
VPS28-205ENST00000526204 PRMT5O14744 637 aaPredicted RBP20.98■□□□□ 0.95
VPS28-205ENST00000526204 ENO2P09104 434 aaPredicted RBP20.98■□□□□ 0.95
VPS28-205ENST00000526204 HTR1EP28566 365 aa20.98■□□□□ 0.95
VPS28-205ENST00000526204 OXTRP30559 389 aa20.98■□□□□ 0.95
VPS28-205ENST00000526204 ALDH3B2P48448 385 aa20.98■□□□□ 0.95
VPS28-205ENST00000526204 ERVPABLB-1P60509 514 aa20.98■□□□□ 0.95
VPS28-205ENST00000526204 YBX1P67809 324 aaKnown RBP20.98■□□□□ 0.95
VPS28-205ENST00000526204 GPNMBQ14956 572 aa20.98■□□□□ 0.95
VPS28-205ENST00000526204 ATP6AP1Q15904 470 aa20.98■□□□□ 0.95
VPS28-205ENST00000526204 KCTD21Q4G0X4 260 aa20.98■□□□□ 0.95
VPS28-205ENST00000526204 SCIMPQ6UWF3 145 aa20.98■□□□□ 0.95
VPS28-205ENST00000526204 FRA10AC1Q70Z53 315 aa20.98■□□□□ 0.95
VPS28-205ENST00000526204 PROSER1Q86XN7 944 aa20.98■□□□□ 0.95
VPS28-205ENST00000526204 EPHX4Q8IUS5 362 aa20.98■□□□□ 0.95
VPS28-205ENST00000526204 TBC1D21Q8IYX1 336 aa20.98■□□□□ 0.95
VPS28-205ENST00000526204 FAM47BQ8NA70 645 aa20.98■□□□□ 0.95
VPS28-205ENST00000526204 PROKR1Q8TCW9 393 aa20.98■□□□□ 0.95
VPS28-205ENST00000526204 BCL7CQ8WUZ0 217 aaPredicted RBP20.98■□□□□ 0.95
VPS28-205ENST00000526204 ESAMQ96AP7 390 aa20.98■□□□□ 0.95
VPS28-205ENST00000526204 PLEKHG4BQ96PX9 1271 aa20.98■□□□□ 0.95
VPS28-205ENST00000526204 C1orf50Q9BV19 199 aa20.98■□□□□ 0.95
VPS28-205ENST00000526204 MAGEE1Q9HCI5 957 aa20.98■□□□□ 0.95
VPS28-205ENST00000526204 HEBP1Q9NRV9 189 aa20.98■□□□□ 0.95
VPS28-205ENST00000526204 ANAPC2Q9UJX6 822 aa20.98■□□□□ 0.95
VPS28-205ENST00000526204 PTBP2Q9UKA9 531 aaKnown RBP20.98■□□□□ 0.95
VPS28-205ENST00000526204 CDH2P19022 906 aaPredicted RBP20.98■□□□□ 0.95
VPS28-205ENST00000526204 MYF6P23409 242 aa20.98■□□□□ 0.95
VPS28-205ENST00000526204 HOXD10P28358 340 aa20.98■□□□□ 0.95
VPS28-205ENST00000526204 HMGCLP35914 325 aa20.98■□□□□ 0.95
VPS28-205ENST00000526204 APLP1P51693 650 aa20.98■□□□□ 0.95
VPS28-205ENST00000526204 EMX2Q04743 252 aa20.98■□□□□ 0.95
VPS28-205ENST00000526204 NANOGP8Q6NSW7 305 aa20.98■□□□□ 0.95
VPS28-205ENST00000526204 LINGO4Q6UY18 593 aa20.98■□□□□ 0.95
VPS28-205ENST00000526204 Q6ZSR9 355 aa20.98■□□□□ 0.95
VPS28-205ENST00000526204 SPRED1Q7Z699 444 aa20.98■□□□□ 0.95
VPS28-205ENST00000526204 IFNEQ86WN2 208 aa20.98■□□□□ 0.95
VPS28-205ENST00000526204 ZFAND4Q86XD8 727 aa20.98■□□□□ 0.95
VPS28-205ENST00000526204 KIAA2013Q8IYS2 634 aa20.98■□□□□ 0.95
VPS28-205ENST00000526204 CRIPAKQ8N1N5 446 aa20.98■□□□□ 0.95
VPS28-205ENST00000526204 DPP10Q8N608 796 aa20.98■□□□□ 0.95
VPS28-205ENST00000526204 TNIP2Q8NFZ5 429 aa20.98■□□□□ 0.95
VPS28-205ENST00000526204 KLF16Q9BXK1 252 aaPredicted RBP20.98■□□□□ 0.95
VPS28-205ENST00000526204 LRRC3Q9BY71 257 aa20.98■□□□□ 0.95
VPS28-205ENST00000526204 NANOGQ9H9S0 305 aa20.98■□□□□ 0.95
VPS28-205ENST00000526204 TUBA8Q9NY65 449 aaPredicted RBP20.98■□□□□ 0.95
VPS28-205ENST00000526204 LHX3Q9UBR4 397 aa20.98■□□□□ 0.95
VPS28-205ENST00000526204 AFF4Q9UHB7 1163 aaKnown RBP20.98■□□□□ 0.95
VPS28-205ENST00000526204 ABT1Q9ULW3 272 aaKnown RBP20.98■□□□□ 0.95
VPS28-205ENST00000526204 ASB1Q9Y576 335 aa20.98■□□□□ 0.95
VPS28-205ENST00000526204 CEPT1Q9Y6K0 416 aa20.98■□□□□ 0.95
VPS28-205ENST00000526204 TCRBV5S2A0A599 114 aa20.97■□□□□ 0.95
VPS28-205ENST00000526204 IFRD1O00458 451 aaPredicted RBP20.97■□□□□ 0.95
VPS28-205ENST00000526204 FZD6O60353 706 aa20.97■□□□□ 0.95
VPS28-205ENST00000526204 RASAL1O95294 804 aa20.97■□□□□ 0.95
VPS28-205ENST00000526204 S100BP04271 92 aaPredicted RBP20.97■□□□□ 0.95
VPS28-205ENST00000526204 MERTKQ12866 999 aa20.97■□□□□ 0.95
VPS28-205ENST00000526204 TIGD2Q4W5G0 525 aa20.97■□□□□ 0.95
VPS28-205ENST00000526204 HID1Q8IV36 788 aa20.97■□□□□ 0.95
VPS28-205ENST00000526204 FIBCD1Q8N539 461 aa20.97■□□□□ 0.95
VPS28-205ENST00000526204 OR52B6Q8NGF0 335 aa20.97■□□□□ 0.95
VPS28-205ENST00000526204 METTL6Q8TCB7 284 aa20.97■□□□□ 0.95
VPS28-205ENST00000526204 DIS3LQ8TF46 1054 aaKnown RBP20.97■□□□□ 0.95
VPS28-205ENST00000526204 ADI1Q9BV57 179 aa20.97■□□□□ 0.95
VPS28-205ENST00000526204 GPR63Q9BZJ6 419 aa20.97■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms