RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 IRX4P78413 519 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 IRX3P78415 501 aaPredicted RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 TXNL4AP83876 142 aaKnown RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 RPL36AP83881 106 aaKnown RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 ECT2LQ008S8 904 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 BEX3Q00994 111 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 TIAL1Q01085 375 aaKnown RBP eCLIP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 PMP22Q01453 160 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 SPIBQ01892 262 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 CYP4A11Q02928 519 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 COL10A1Q03692 680 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 GBE1Q04446 702 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZNF91Q05481 1191 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 PRKCZQ05513 592 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 GFPT1Q06210 699 aaPredicted RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 RBPJQ06330 500 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 CDK18Q07002 472 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 SRSF1Q07955 248 aaKnown RBP eCLIP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 ELP6Q0PNE2 266 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 KIF5AQ12840 1032 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 FOXI1Q12951 378 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 ABRQ12979 859 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZBTB17Q13105 803 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 PDZK1IP1Q13113 114 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 CHIT1Q13231 466 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 GPM6BQ13491 265 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 TDGQ13569 410 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 TRA2AQ13595 282 aaKnown RBP eCLIP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 DNASE1L3Q13609 305 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 CUL2Q13617 745 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 FHL3Q13643 280 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 BYSLQ13895 437 aaKnown RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 RUNX2Q13950 521 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 KCNC3Q14003 757 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 GIT2Q14161 759 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 FRG1Q14331 258 aaKnown RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 MXD4Q14582 209 aaPredicted RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 IL11RAQ14626 422 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 LPIN1Q14693 890 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 DRAP1Q14919 205 aaPredicted RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 PGM5Q15124 567 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZMYND11Q15326 602 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 SYCP1Q15431 976 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 RBMS2Q15434 407 aaKnown RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZRSR1Q15695 479 aaKnown RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 SLC1A5Q15758 541 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 ETFDHQ16134 617 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 CNGA3Q16281 694 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 SNAPC1Q16533 368 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 DPYSL2Q16555 572 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 SLC18A3Q16572 532 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 SGCBQ16585 318 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 TAZQ16635 292 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 UGCGQ16739 394 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 UGP2Q16851 508 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 CDO1Q16878 200 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 FAM187BQ17R55 369 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 KRT24Q2M2I5 525 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 SHROOM1Q2M3G4 852 aaPredicted RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 LETM2Q2VYF4 491 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 HFEQ30201 348 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 FAM214AQ32MH5 1076 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 EDRF1Q3B7T1 1238 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 PCGF3Q3KNV8 242 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 MAJINQ3KP22 176 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 FAM174BQ3ZCQ3 159 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 AARDQ4LEZ3 155 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 TMEM119Q4V9L6 283 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 KLHL26Q53HC5 615 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 SOWAHCQ53LP3 525 aaPredicted RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 FASTKD1Q53R41 847 aaKnown RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 BOLA3Q53S33 107 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 HERC4Q5GLZ8 1057 aaPredicted RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 TMEM196Q5HYL7 178 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 CFAP157Q5JU67 520 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 EFHC1Q5JVL4 640 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 SH2D4BQ5SQS7 431 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 TTC39AQ5SRH9 613 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 RARS2Q5T160 578 aaKnown RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 DDX59Q5T1V6 619 aaKnown RBP eCLIP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 LCE1EQ5T753 118 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 FAM72AQ5TYM5 149 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 FAM90A2PQ658T7 463 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 FAM91A1Q658Y4 838 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 PLA2G4FQ68DD2 849 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 ARHGAP17Q68EM7 881 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 KIAA0895LQ68EN5 471 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 KRT39Q6A163 491 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 TXNDC8Q6A555 127 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 ANKRD40Q6AI12 368 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 IGFL4Q6B9Z1 124 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 AWAT2Q6E213 333 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 PM20D1Q6GTS8 502 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 RAET1GQ6H3X3 334 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 DHRS7BQ6IAN0 325 aaPredicted RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 KIAA0930Q6ICG6 404 aaPredicted RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 FAM72DQ6L9T8 149 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 TAPT1Q6NXT6 567 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 AADACL2Q6P093 401 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 CASC4Q6P4E1 433 aa0.58□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms