RNA–Protein interactions for RNA: ENST00000514536.5

USP46-209, Transcript of ubiquitin specific peptidase 46, humanhuman

TSL 2

Gene USP46, Length 1,589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP46-209ENST00000514536 RABGEF1Q9UJ41 708 aa13.74□□□□□ -0.21
USP46-209ENST00000514536 CDC23Q9UJX2 597 aa13.74□□□□□ -0.21
USP46-209ENST00000514536 SOX13Q9UN79 622 aa13.74□□□□□ -0.21
USP46-209ENST00000514536 RNF215Q9Y6U7 377 aa13.74□□□□□ -0.21
USP46-209ENST00000514536 GOLGA4Q13439 2230 aaKnown RBP13.73□□□□□ -0.21
USP46-209ENST00000514536 KMT2BQ9UMN6 2715 aaPredicted RBP13.73□□□□□ -0.21
USP46-209ENST00000514536 SGTAO43765 313 aa13.73□□□□□ -0.21
USP46-209ENST00000514536 GLB1P16278 677 aa13.73□□□□□ -0.21
USP46-209ENST00000514536 PBLDP30039 288 aaPredicted RBP13.73□□□□□ -0.21
USP46-209ENST00000514536 INSM1Q01101 510 aaPredicted RBP13.73□□□□□ -0.21
USP46-209ENST00000514536 BIRC2Q13490 618 aa13.73□□□□□ -0.21
USP46-209ENST00000514536 IYDQ6PHW0 289 aa13.73□□□□□ -0.21
USP46-209ENST00000514536 AMZ2Q86W34 360 aa13.73□□□□□ -0.21
USP46-209ENST00000514536 MARCH9Q86YJ5 346 aa13.73□□□□□ -0.21
USP46-209ENST00000514536 Q8N9G6 341 aaPredicted RBP13.73□□□□□ -0.21
USP46-209ENST00000514536 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.73□□□□□ -0.21
USP46-209ENST00000514536 ZNF514Q96K75 400 aaPredicted RBP13.73□□□□□ -0.21
USP46-209ENST00000514536 CCDC3Q9BQI4 270 aa13.73□□□□□ -0.21
USP46-209ENST00000514536 MRM3Q9HC36 420 aaKnown RBP13.73□□□□□ -0.21
USP46-209ENST00000514536 SAMD15Q9P1V8 674 aa13.73□□□□□ -0.21
USP46-209ENST00000514536 KLK13Q9UKR3 277 aa13.73□□□□□ -0.21
USP46-209ENST00000514536 DNMT3AQ9Y6K1 912 aaPredicted RBP13.73□□□□□ -0.21
USP46-209ENST00000514536 CACNA1BQ00975 2339 aa13.73□□□□□ -0.21
USP46-209ENST00000514536 IGLV3-16A0A075B6K0 115 aa13.72□□□□□ -0.21
USP46-209ENST00000514536 MAGEB16A2A368 324 aa13.72□□□□□ -0.21
USP46-209ENST00000514536 FAM149AA5PLN7 773 aa13.72□□□□□ -0.21
USP46-209ENST00000514536 RHPN2P1A8MT19 583 aa13.72□□□□□ -0.21
USP46-209ENST00000514536 EFCAB8A8MWE9 144 aa13.72□□□□□ -0.21
USP46-209ENST00000514536 CASC3O15234 703 aaKnown RBP13.72□□□□□ -0.21
USP46-209ENST00000514536 TUBB4AP04350 444 aa13.72□□□□□ -0.21
USP46-209ENST00000514536 VCLP18206 1134 aa13.72□□□□□ -0.21
USP46-209ENST00000514536 SMAD1Q15797 465 aaKnown RBP13.72□□□□□ -0.21
USP46-209ENST00000514536 SEPT7Q16181 437 aaKnown RBP13.72□□□□□ -0.21
USP46-209ENST00000514536 FASTKD1Q53R41 847 aaKnown RBP13.72□□□□□ -0.21
USP46-209ENST00000514536 HES3Q5TGS1 186 aa13.72□□□□□ -0.21
USP46-209ENST00000514536 TMPRSS7Q7RTY8 843 aa13.72□□□□□ -0.21
USP46-209ENST00000514536 AGGF1Q8N302 714 aaeCLIP13.72□□□□□ -0.21
USP46-209ENST00000514536 GALNT15Q8N3T1 639 aa13.72□□□□□ -0.21
USP46-209ENST00000514536 SGSM3Q96HU1 749 aa13.72□□□□□ -0.21
USP46-209ENST00000514536 SIGLEC10Q96LC7 697 aa13.72□□□□□ -0.21
USP46-209ENST00000514536 TRIM56Q9BRZ2 755 aaKnown RBP13.72□□□□□ -0.21
USP46-209ENST00000514536 ANGPTL2Q9UKU9 493 aa13.72□□□□□ -0.21
USP46-209ENST00000514536 CHD8Q9HCK8 2581 aa13.72□□□□□ -0.21
USP46-209ENST00000514536 MYLKQ15746 1914 aa13.72□□□□□ -0.21
USP46-209ENST00000514536 A6NCN8 305 aa13.71□□□□□ -0.21
USP46-209ENST00000514536 FAM187AA6NFU0 413 aa13.71□□□□□ -0.21
USP46-209ENST00000514536 MGAT4DA6NG13 374 aa13.71□□□□□ -0.21
USP46-209ENST00000514536 PRR19A6NJB7 356 aa13.71□□□□□ -0.21
USP46-209ENST00000514536 PDZK1P1A8MUH7 402 aa13.71□□□□□ -0.21
USP46-209ENST00000514536 KIF2AO00139 706 aaPredicted RBP13.71□□□□□ -0.21
USP46-209ENST00000514536 PPM1DO15297 605 aa13.71□□□□□ -0.21
USP46-209ENST00000514536 CD3EAPO15446 510 aaKnown RBP13.71□□□□□ -0.21
USP46-209ENST00000514536 NUDT21O43809 227 aaKnown RBP13.71□□□□□ -0.21
USP46-209ENST00000514536 KCNJ13O60928 360 aa13.71□□□□□ -0.21
USP46-209ENST00000514536 VAPBO95292 243 aa13.71□□□□□ -0.21
USP46-209ENST00000514536 F3P13726 295 aa13.71□□□□□ -0.21
USP46-209ENST00000514536 SLC2A4P14672 509 aa13.71□□□□□ -0.21
USP46-209ENST00000514536 JUPP14923 745 aa13.71□□□□□ -0.21
USP46-209ENST00000514536 IDSP22304 550 aa13.71□□□□□ -0.21
USP46-209ENST00000514536 RPL10P27635 214 aaKnown RBP13.71□□□□□ -0.21
USP46-209ENST00000514536 MAGEA3P43357 314 aa13.71□□□□□ -0.21
USP46-209ENST00000514536 ITGA8P53708 1063 aa13.71□□□□□ -0.21
USP46-209ENST00000514536 DRG2P55039 364 aaKnown RBP13.71□□□□□ -0.21
USP46-209ENST00000514536 CCL7P80098 99 aa13.71□□□□□ -0.21
USP46-209ENST00000514536 SHC2P98077 582 aa13.71□□□□□ -0.21
USP46-209ENST00000514536 NFE2L1Q14494 772 aa13.71□□□□□ -0.21
USP46-209ENST00000514536 SEMA3AQ14563 771 aa13.71□□□□□ -0.21
USP46-209ENST00000514536 BCL7AQ4VC05 210 aa13.71□□□□□ -0.21
USP46-209ENST00000514536 LYPLAL1Q5VWZ2 237 aa13.71□□□□□ -0.21
USP46-209ENST00000514536 CERS6Q6ZMG9 384 aa13.71□□□□□ -0.21
USP46-209ENST00000514536 FAM83HQ6ZRV2 1179 aaPredicted RBP13.71□□□□□ -0.21
USP46-209ENST00000514536 MAATS1Q7Z4T9 603 aa13.71□□□□□ -0.21
USP46-209ENST00000514536 LDB1Q86U70 411 aaPredicted RBP13.71□□□□□ -0.21
USP46-209ENST00000514536 HOOK3Q86VS8 718 aa13.71□□□□□ -0.21
USP46-209ENST00000514536 TMPRSS12Q86WS5 348 aa13.71□□□□□ -0.21
USP46-209ENST00000514536 SFRP1Q8N474 314 aa13.71□□□□□ -0.21
USP46-209ENST00000514536 CLDN19Q8N6F1 224 aa13.71□□□□□ -0.21
USP46-209ENST00000514536 SLC37A2Q8TED4 501 aa13.71□□□□□ -0.21
USP46-209ENST00000514536 TTC1Q99614 292 aa13.71□□□□□ -0.21
USP46-209ENST00000514536 SYNDIG1Q9H7V2 258 aa13.71□□□□□ -0.21
USP46-209ENST00000514536 CATSPERZQ9NTU4 200 aa13.71□□□□□ -0.21
USP46-209ENST00000514536 SCHIP1Q9P0W5 487 aaPredicted RBP13.71□□□□□ -0.21
USP46-209ENST00000514536 MARCH4Q9P2E8 410 aaPredicted RBP13.71□□□□□ -0.21
USP46-209ENST00000514536 FAM8A1Q9UBU6 413 aa13.71□□□□□ -0.21
USP46-209ENST00000514536 ANAPC5Q9UJX4 755 aa13.71□□□□□ -0.21
USP46-209ENST00000514536 SNX24Q9Y343 169 aa13.71□□□□□ -0.21
USP46-209ENST00000514536 MAD1L1Q9Y6D9 718 aa13.71□□□□□ -0.21
USP46-209ENST00000514536 PRSS21Q9Y6M0 314 aa13.71□□□□□ -0.21
USP46-209ENST00000514536 FAM237BA0A1B0GVD1 139 aa13.71□□□□□ -0.22
USP46-209ENST00000514536 OR5K4A6NMS3 321 aa13.71□□□□□ -0.22
USP46-209ENST00000514536 RAD51CO43502 376 aa13.71□□□□□ -0.22
USP46-209ENST00000514536 OR1I1O60431 355 aa13.71□□□□□ -0.22
USP46-209ENST00000514536 MT-CO3P00414 261 aa13.71□□□□□ -0.22
USP46-209ENST00000514536 PNLIPP16233 465 aa13.71□□□□□ -0.22
USP46-209ENST00000514536 PRLHRP49683 370 aa13.71□□□□□ -0.22
USP46-209ENST00000514536 CKAP4Q07065 602 aaKnown RBP13.71□□□□□ -0.22
USP46-209ENST00000514536 ITIH4Q14624 930 aa13.71□□□□□ -0.22
USP46-209ENST00000514536 MORF4L2Q15014 288 aa13.71□□□□□ -0.22
USP46-209ENST00000514536 ANKRD20A4Q4UJ75 823 aa13.71□□□□□ -0.22
USP46-209ENST00000514536 ARMC3Q5W041 872 aa13.71□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms