RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 MLLT3P42568 568 aaPredicted RBP9.55□□□□□ -0.88
RNF4-221ENST00000513643 CDKN1CP49918 316 aaPredicted RBP9.55□□□□□ -0.88
RNF4-221ENST00000513643 ARSDP51689 593 aa9.55□□□□□ -0.88
RNF4-221ENST00000513643 ERVPABLB-1P60509 514 aa9.55□□□□□ -0.88
RNF4-221ENST00000513643 CDK16Q00536 496 aa9.55□□□□□ -0.88
RNF4-221ENST00000513643 SPIDRQ14159 915 aa9.55□□□□□ -0.88
RNF4-221ENST00000513643 POU6F1Q14863 301 aa9.55□□□□□ -0.88
RNF4-221ENST00000513643 TBC1D25Q3MII6 688 aa9.55□□□□□ -0.88
RNF4-221ENST00000513643 PAPD7Q5XG87 772 aaKnown RBP9.55□□□□□ -0.88
RNF4-221ENST00000513643 METRNLQ641Q3 311 aa9.55□□□□□ -0.88
RNF4-221ENST00000513643 TMEM220Q6QAJ8 160 aa9.55□□□□□ -0.88
RNF4-221ENST00000513643 FAM83HQ6ZRV2 1179 aaPredicted RBP9.55□□□□□ -0.88
RNF4-221ENST00000513643 MICALCLQ6ZW33 695 aa9.55□□□□□ -0.88
RNF4-221ENST00000513643 PIANPQ8IYJ0 282 aa9.55□□□□□ -0.88
RNF4-221ENST00000513643 LSMEM2Q8N112 164 aa9.55□□□□□ -0.88
RNF4-221ENST00000513643 Q8N9G6 341 aaPredicted RBP9.55□□□□□ -0.88
RNF4-221ENST00000513643 HEXDCQ8WVB3 486 aa9.55□□□□□ -0.88
RNF4-221ENST00000513643 ULK4Q96C45 1275 aa9.55□□□□□ -0.88
RNF4-221ENST00000513643 LRRC45Q96CN5 670 aa9.55□□□□□ -0.88
RNF4-221ENST00000513643 ZNF514Q96K75 400 aaPredicted RBP9.55□□□□□ -0.88
RNF4-221ENST00000513643 GFM1Q96RP9 751 aaKnown RBP9.55□□□□□ -0.88
RNF4-221ENST00000513643 OSBPL9Q96SU4 736 aa9.55□□□□□ -0.88
RNF4-221ENST00000513643 PIH1D1Q9NWS0 290 aaKnown RBP9.55□□□□□ -0.88
RNF4-221ENST00000513643 SNX12Q9UMY4 172 aa9.55□□□□□ -0.88
RNF4-221ENST00000513643 WDR37Q9Y2I8 494 aa9.55□□□□□ -0.88
RNF4-221ENST00000513643 ZNF106Q9H2Y7 1883 aaKnown RBP9.55□□□□□ -0.88
RNF4-221ENST00000513643 IGSF10Q6WRI0 2623 aa9.54□□□□□ -0.88
RNF4-221ENST00000513643 CCDC187A0A096LP49 1063 aa9.54□□□□□ -0.88
RNF4-221ENST00000513643 C17orf113A0A1B0GUU1 675 aa9.54□□□□□ -0.88
RNF4-221ENST00000513643 PMS2P1A4D2B8 440 aa9.54□□□□□ -0.88
RNF4-221ENST00000513643 MGAT4DA6NG13 374 aa9.54□□□□□ -0.88
RNF4-221ENST00000513643 LILRA5A6NI73 299 aa9.54□□□□□ -0.88
RNF4-221ENST00000513643 RHPN2P1A8MT19 583 aa9.54□□□□□ -0.88
RNF4-221ENST00000513643 CCL22O00626 93 aa9.54□□□□□ -0.88
RNF4-221ENST00000513643 MPOP05164 745 aa9.54□□□□□ -0.88
RNF4-221ENST00000513643 APRTP07741 180 aa9.54□□□□□ -0.88
RNF4-221ENST00000513643 SLC2A4P14672 509 aa9.54□□□□□ -0.88
RNF4-221ENST00000513643 TPSB2P20231 275 aa9.54□□□□□ -0.88
RNF4-221ENST00000513643 ACRV1P26436 265 aa9.54□□□□□ -0.88
RNF4-221ENST00000513643 MC4RP32245 332 aa9.54□□□□□ -0.88
RNF4-221ENST00000513643 FOXN2P32314 431 aa9.54□□□□□ -0.88
RNF4-221ENST00000513643 CSF2RBP32927 897 aa9.54□□□□□ -0.88
RNF4-221ENST00000513643 COILP38432 576 aaPredicted RBP9.54□□□□□ -0.88
RNF4-221ENST00000513643 EIF2S3P41091 472 aaKnown RBP9.54□□□□□ -0.88
RNF4-221ENST00000513643 LIMK2P53671 638 aa9.54□□□□□ -0.88
RNF4-221ENST00000513643 EPHA4P54764 986 aa9.54□□□□□ -0.88
RNF4-221ENST00000513643 GPLD1P80108 840 aa9.54□□□□□ -0.88
RNF4-221ENST00000513643 HHEXQ03014 270 aa9.54□□□□□ -0.88
RNF4-221ENST00000513643 EIF3IQ13347 325 aaKnown RBP9.54□□□□□ -0.88
RNF4-221ENST00000513643 LAMB3Q13751 1172 aa9.54□□□□□ -0.88
RNF4-221ENST00000513643 CLCA4Q14CN2 919 aa9.54□□□□□ -0.88
RNF4-221ENST00000513643 TPSAB1Q15661 275 aa9.54□□□□□ -0.88
RNF4-221ENST00000513643 SKIDA1Q1XH10 827 aa9.54□□□□□ -0.88
RNF4-221ENST00000513643 TSTD2Q5T7W7 516 aa9.54□□□□□ -0.88
RNF4-221ENST00000513643 ARMC3Q5W041 872 aa9.54□□□□□ -0.88
RNF4-221ENST00000513643 WDR74Q6RFH5 385 aaPredicted RBP9.54□□□□□ -0.88
RNF4-221ENST00000513643 CRTC3Q6UUV7 619 aa9.54□□□□□ -0.88
RNF4-221ENST00000513643 CLEC14AQ86T13 490 aa9.54□□□□□ -0.88
RNF4-221ENST00000513643 SLC9B2Q86UD5 537 aa9.54□□□□□ -0.88
RNF4-221ENST00000513643 AMZ2Q86W34 360 aa9.54□□□□□ -0.88
RNF4-221ENST00000513643 TAB3Q8N5C8 712 aaPredicted RBP9.54□□□□□ -0.88
RNF4-221ENST00000513643 CCDC89Q8N998 374 aa9.54□□□□□ -0.88
RNF4-221ENST00000513643 AVL9Q8NBF6 648 aa9.54□□□□□ -0.88
RNF4-221ENST00000513643 OR4D9Q8NGE8 314 aa9.54□□□□□ -0.88
RNF4-221ENST00000513643 OR2L2Q8NH16 312 aa9.54□□□□□ -0.88
RNF4-221ENST00000513643 WDR36Q8NI36 951 aaKnown RBP9.54□□□□□ -0.88
RNF4-221ENST00000513643 FGF11Q92914 225 aa9.54□□□□□ -0.88
RNF4-221ENST00000513643 TMEM159Q96B96 161 aa9.54□□□□□ -0.88
RNF4-221ENST00000513643 SGF29Q96ES7 293 aa9.54□□□□□ -0.88
RNF4-221ENST00000513643 ZNF778Q96MU6 729 aa9.54□□□□□ -0.88
RNF4-221ENST00000513643 ZNF578Q96N58 590 aaPredicted RBP9.54□□□□□ -0.88
RNF4-221ENST00000513643 TMEM74Q96NL1 305 aa9.54□□□□□ -0.88
RNF4-221ENST00000513643 DPYSL5Q9BPU6 564 aa9.54□□□□□ -0.88
RNF4-221ENST00000513643 NUDT22Q9BRQ3 303 aa9.54□□□□□ -0.88
RNF4-221ENST00000513643 ZCCHC2Q9C0B9 1178 aaKnown RBP9.54□□□□□ -0.88
RNF4-221ENST00000513643 B3GNT4Q9C0J1 378 aa9.54□□□□□ -0.88
RNF4-221ENST00000513643 SEMA6CQ9H3T2 930 aa9.54□□□□□ -0.88
RNF4-221ENST00000513643 SLC40A1Q9NP59 571 aa9.54□□□□□ -0.88
RNF4-221ENST00000513643 TREX1Q9NSU2 369 aa9.54□□□□□ -0.88
RNF4-221ENST00000513643 TRMT1Q9NXH9 659 aaKnown RBP9.54□□□□□ -0.88
RNF4-221ENST00000513643 ZDHHC3Q9NYG2 299 aa9.54□□□□□ -0.88
RNF4-221ENST00000513643 OGFRQ9NZT2 677 aa9.54□□□□□ -0.88
RNF4-221ENST00000513643 CPNE7Q9UBL6 633 aa9.54□□□□□ -0.88
RNF4-221ENST00000513643 ACSL6Q9UKU0 697 aa9.54□□□□□ -0.88
RNF4-221ENST00000513643 ATXN7L1Q9ULK2 861 aaPredicted RBP9.54□□□□□ -0.88
RNF4-221ENST00000513643 PYCARDQ9ULZ3 195 aa9.54□□□□□ -0.88
RNF4-221ENST00000513643 RAXQ9Y2V3 346 aa9.54□□□□□ -0.88
RNF4-221ENST00000513643 TRBV23OR9-2A0A075B6M9 112 aa9.53□□□□□ -0.88
RNF4-221ENST00000513643 IGHV5-10-1A0A0J9YXX1 117 aa9.53□□□□□ -0.88
RNF4-221ENST00000513643 TCRBV7S3A2A0A539 114 aa9.53□□□□□ -0.88
RNF4-221ENST00000513643 HEATR9A2RTY3 570 aa9.53□□□□□ -0.88
RNF4-221ENST00000513643 KIF5CO60282 957 aa9.53□□□□□ -0.88
RNF4-221ENST00000513643 PRSS56P0CW18 603 aa9.53□□□□□ -0.88
RNF4-221ENST00000513643 THRAP10827 490 aa9.53□□□□□ -0.88
RNF4-221ENST00000513643 ATP1B2P14415 290 aaPredicted RBP9.53□□□□□ -0.88
RNF4-221ENST00000513643 MSH3P20585 1137 aa9.53□□□□□ -0.88
RNF4-221ENST00000513643 ITGALP20701 1170 aa9.53□□□□□ -0.88
RNF4-221ENST00000513643 IDSP22304 550 aa9.53□□□□□ -0.88
RNF4-221ENST00000513643 ALDH4A1P30038 563 aa9.53□□□□□ -0.88
RNF4-221ENST00000513643 ACTN2P35609 894 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms