RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 TMEM168Q9H0V1 697 aa29.22■■■□□ 2.27
LIMCH1-211ENST00000509638 TM7SF3Q9NS93 570 aa29.22■■■□□ 2.27
LIMCH1-211ENST00000509638 ZFATQ9P243 1243 aa29.22■■■□□ 2.27
LIMCH1-211ENST00000509638 GPSM3Q9Y4H4 160 aa29.22■■■□□ 2.27
LIMCH1-211ENST00000509638 YKT6O15498 198 aa29.21■■■□□ 2.27
LIMCH1-211ENST00000509638 FOXD2O60548 495 aaPredicted RBP29.21■■■□□ 2.27
LIMCH1-211ENST00000509638 SPAG6O75602 509 aa29.21■■■□□ 2.27
LIMCH1-211ENST00000509638 PIAS2O75928 621 aa29.21■■■□□ 2.27
LIMCH1-211ENST00000509638 MPP1Q00013 466 aa29.21■■■□□ 2.27
LIMCH1-211ENST00000509638 MGAT5Q09328 741 aa29.21■■■□□ 2.27
LIMCH1-211ENST00000509638 CCNI2Q6ZMN8 369 aaPredicted RBP29.21■■■□□ 2.27
LIMCH1-211ENST00000509638 TCF12Q99081 682 aa29.21■■■□□ 2.27
LIMCH1-211ENST00000509638 FBXO5Q9UKT4 447 aa29.21■■■□□ 2.27
LIMCH1-211ENST00000509638 UBA6A0AVT1 1052 aaPredicted RBP29.2■■■□□ 2.26
LIMCH1-211ENST00000509638 PFDN6O15212 129 aa29.2■■■□□ 2.26
LIMCH1-211ENST00000509638 SGTAO43765 313 aa29.2■■■□□ 2.26
LIMCH1-211ENST00000509638 CTSEP14091 401 aa29.2■■■□□ 2.26
LIMCH1-211ENST00000509638 ZNF7P17097 686 aaPredicted RBP29.2■■■□□ 2.26
LIMCH1-211ENST00000509638 TMEM220Q6QAJ8 160 aa29.2■■■□□ 2.26
LIMCH1-211ENST00000509638 BEND7Q8N7W2 519 aaPredicted RBP29.2■■■□□ 2.26
LIMCH1-211ENST00000509638 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP29.2■■■□□ 2.269e-7■■■■■ 57.1
LIMCH1-211ENST00000509638 LPGAT1Q92604 370 aa29.2■■■□□ 2.26
LIMCH1-211ENST00000509638 ZNF514Q96K75 400 aaPredicted RBP29.2■■■□□ 2.26
LIMCH1-211ENST00000509638 CLPBQ9H078 707 aa29.2■■■□□ 2.26
LIMCH1-211ENST00000509638 TMEM9BQ9NQ34 198 aa29.2■■■□□ 2.26
LIMCH1-211ENST00000509638 FBXO6Q9NRD1 293 aaPredicted RBP29.2■■■□□ 2.26
LIMCH1-211ENST00000509638 INTS10Q9NVR2 710 aaKnown RBP29.2■■■□□ 2.26
LIMCH1-211ENST00000509638 PRSS21Q9Y6M0 314 aa29.2■■■□□ 2.26
LIMCH1-211ENST00000509638 ACSL3O95573 720 aa29.19■■■□□ 2.26
LIMCH1-211ENST00000509638 CELA2BP08218 269 aaPredicted RBP29.19■■■□□ 2.26
LIMCH1-211ENST00000509638 STX2P32856 288 aa29.19■■■□□ 2.26
LIMCH1-211ENST00000509638 BCL7AQ4VC05 210 aa29.19■■■□□ 2.26
LIMCH1-211ENST00000509638 TEDDM1Q5T9Z0 273 aa29.19■■■□□ 2.26
LIMCH1-211ENST00000509638 CHST15Q7LFX5 561 aaPredicted RBP29.19■■■□□ 2.26
LIMCH1-211ENST00000509638 C2CD4AQ8NCU7 369 aaPredicted RBP29.19■■■□□ 2.26
LIMCH1-211ENST00000509638 LMX1AQ8TE12 382 aa29.19■■■□□ 2.26
LIMCH1-211ENST00000509638 DNAAF2Q9NVR5 837 aaKnown RBP29.19■■■□□ 2.26
LIMCH1-211ENST00000509638 UCKL1Q9NWZ5 548 aa29.19■■■□□ 2.26
LIMCH1-211ENST00000509638 TRNAU1APQ9NX07 287 aaKnown RBP29.19■■■□□ 2.26
LIMCH1-211ENST00000509638 SPASTQ9UBP0 616 aa29.19■■■□□ 2.26
LIMCH1-211ENST00000509638 CDX4O14627 284 aaPredicted RBP29.18■■■□□ 2.26
LIMCH1-211ENST00000509638 PRMT5O14744 637 aaPredicted RBP29.18■■■□□ 2.26
LIMCH1-211ENST00000509638 PIAS1O75925 651 aa29.18■■■□□ 2.26
LIMCH1-211ENST00000509638 ACP5P13686 325 aa29.18■■■□□ 2.26
LIMCH1-211ENST00000509638 PRLHRP49683 370 aa29.18■■■□□ 2.26
LIMCH1-211ENST00000509638 BNIP3Q12983 259 aa29.18■■■□□ 2.26
LIMCH1-211ENST00000509638 C1orf61Q13536 156 aa29.18■■■□□ 2.26
LIMCH1-211ENST00000509638 ZNF789Q5FWF6 425 aa29.18■■■□□ 2.26
LIMCH1-211ENST00000509638 SCG3Q8WXD2 468 aaKnown RBP29.18■■■□□ 2.26
LIMCH1-211ENST00000509638 PARD6BQ9BYG5 372 aa29.18■■■□□ 2.26
LIMCH1-211ENST00000509638 GPR34Q9UPC5 381 aa29.18■■■□□ 2.26
LIMCH1-211ENST00000509638 VPS9D1Q9Y2B5 631 aa29.18■■■□□ 2.26
LIMCH1-211ENST00000509638 ASCC3Q8N3C0 2202 aaKnown RBP29.18■■■□□ 2.26
LIMCH1-211ENST00000509638 KMOO15229 486 aa29.18■■■□□ 2.26
LIMCH1-211ENST00000509638 AQP9O43315 295 aa29.18■■■□□ 2.26
LIMCH1-211ENST00000509638 S1PR4O95977 384 aa29.18■■■□□ 2.26
LIMCH1-211ENST00000509638 DGKAP23743 735 aa29.18■■■□□ 2.26
LIMCH1-211ENST00000509638 MCM3P25205 808 aa29.18■■■□□ 2.26
LIMCH1-211ENST00000509638 EIF3BP55884 814 aaKnown RBP29.18■■■□□ 2.26
LIMCH1-211ENST00000509638 LRP8Q14114 963 aa29.18■■■□□ 2.26
LIMCH1-211ENST00000509638 INSCQ1MX18 579 aa29.18■■■□□ 2.26
LIMCH1-211ENST00000509638 ZNF449Q6P9G9 518 aa29.18■■■□□ 2.26
LIMCH1-211ENST00000509638 KIAA0408Q6ZU52 694 aa29.18■■■□□ 2.26
LIMCH1-211ENST00000509638 C11orf96Q7Z7L8 435 aa29.18■■■□□ 2.26
LIMCH1-211ENST00000509638 GATAD2AQ86YP4 633 aa29.18■■■□□ 2.26
LIMCH1-211ENST00000509638 CCL4L1Q8NHW4 92 aa29.18■■■□□ 2.26
LIMCH1-211ENST00000509638 FBF1Q8TES7 1133 aa29.18■■■□□ 2.26
LIMCH1-211ENST00000509638 CFAP54Q96N23 3096 aa29.18■■■□□ 2.26
LIMCH1-211ENST00000509638 CRYL1Q9Y2S2 319 aa29.18■■■□□ 2.26
LIMCH1-211ENST00000509638 PLEKHM1Q9Y4G2 1056 aa29.18■■■□□ 2.26
LIMCH1-211ENST00000509638 GDF9O60383 454 aa29.17■■■□□ 2.26
LIMCH1-211ENST00000509638 AP2A2O94973 939 aa29.17■■■□□ 2.26
LIMCH1-211ENST00000509638 ZNF883P0CG24 379 aa29.17■■■□□ 2.26
LIMCH1-211ENST00000509638 PBLDP30039 288 aaPredicted RBP29.17■■■□□ 2.26
LIMCH1-211ENST00000509638 PHBP35232 272 aa29.17■■■□□ 2.26
LIMCH1-211ENST00000509638 ILF3Q12906 894 aaKnown RBP eCLIP29.17■■■□□ 2.26
LIMCH1-211ENST00000509638 ELOCQ15369 112 aa29.17■■■□□ 2.26
LIMCH1-211ENST00000509638 FSTL5Q8N475 847 aaPredicted RBP29.17■■■□□ 2.26
LIMCH1-211ENST00000509638 SAP25Q8TEE9 199 aa29.17■■■□□ 2.26
LIMCH1-211ENST00000509638 TXLNGYQ9BZA5 131 aa29.17■■■□□ 2.26
LIMCH1-211ENST00000509638 P2RY12Q9H244 342 aa29.17■■■□□ 2.26
LIMCH1-211ENST00000509638 SMYD2Q9NRG4 433 aa29.17■■■□□ 2.26
LIMCH1-211ENST00000509638 ST14Q9Y5Y6 855 aa29.17■■■□□ 2.26
LIMCH1-211ENST00000509638 PTPRZ1P23471 2315 aaPredicted RBP29.16■■■□□ 2.26
LIMCH1-211ENST00000509638 PIEZO1Q92508 2521 aa29.16■■■□□ 2.26
LIMCH1-211ENST00000509638 PMS2P54278 862 aa29.16■■■□□ 2.26
LIMCH1-211ENST00000509638 CTBSQ01459 385 aa29.16■■■□□ 2.26
LIMCH1-211ENST00000509638 CDKL2Q92772 493 aa29.16■■■□□ 2.26
LIMCH1-211ENST00000509638 SLC23A2Q9UGH3 650 aa29.16■■■□□ 2.26
LIMCH1-211ENST00000509638 GNPTGQ9UJJ9 305 aa29.16■■■□□ 2.26
LIMCH1-211ENST00000509638 KCNK6Q9Y257 313 aa29.16■■■□□ 2.26
LIMCH1-211ENST00000509638 PSAT1Q9Y617 370 aa29.16■■■□□ 2.26
LIMCH1-211ENST00000509638 ARHGEF17Q96PE2 2063 aaPredicted RBP29.16■■■□□ 2.26
LIMCH1-211ENST00000509638 FAM159BA6NKW6 160 aa29.15■■■□□ 2.26
LIMCH1-211ENST00000509638 QSOX1O00391 747 aa29.15■■■□□ 2.26
LIMCH1-211ENST00000509638 C1QAP02745 245 aa29.15■■■□□ 2.26
LIMCH1-211ENST00000509638 RPS3P23396 243 aaKnown RBP eCLIP29.15■■■□□ 2.26
LIMCH1-211ENST00000509638 AK4P27144 223 aaPredicted RBP29.15■■■□□ 2.26
LIMCH1-211ENST00000509638 KBTBD12Q3ZCT8 623 aa29.15■■■□□ 2.26
LIMCH1-211ENST00000509638 CYS1Q717R9 158 aa29.15■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms