RNA–Protein interactions for RNA: ENST00000504557.1

HOXC9-202, Transcript of homeobox C9, humanhuman

TSL 3

Gene HOXC9, Length 581 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9-202ENST00000504557 PPP2R2CQ9Y2T4 447 aa14.03□□□□□ -0.16
HOXC9-202ENST00000504557 PCDHGA8Q9Y5G5 932 aa14.03□□□□□ -0.16
HOXC9-202ENST00000504557 ZFYVE26Q68DK2 2539 aa14.03□□□□□ -0.16
HOXC9-202ENST00000504557 CHD6Q8TD26 2715 aa14.03□□□□□ -0.16
HOXC9-202ENST00000504557 SDK2Q58EX2 2172 aa14.02□□□□□ -0.16
HOXC9-202ENST00000504557 KIR2DS5A0A0G2JLQ3 304 aa14.02□□□□□ -0.17
HOXC9-202ENST00000504557 A0A0G2JNG1 304 aa14.02□□□□□ -0.17
HOXC9-202ENST00000504557 A6NCN8 305 aa14.02□□□□□ -0.17
HOXC9-202ENST00000504557 OR52A4PA6NMU1 304 aa14.02□□□□□ -0.17
HOXC9-202ENST00000504557 E7EVH7 732 aa14.02□□□□□ -0.17
HOXC9-202ENST00000504557 KIR2DS3K7RE56 304 aa14.02□□□□□ -0.17
HOXC9-202ENST00000504557 DUX1O43812 170 aa14.02□□□□□ -0.17
HOXC9-202ENST00000504557 PPFIA2O75334 1257 aa14.02□□□□□ -0.17
HOXC9-202ENST00000504557 POP7O75817 140 aaKnown RBP14.02□□□□□ -0.17
HOXC9-202ENST00000504557 ZNF189O75820 626 aaPredicted RBP14.02□□□□□ -0.17
HOXC9-202ENST00000504557 VIPP01282 170 aa14.02□□□□□ -0.17
HOXC9-202ENST00000504557 ITGA2BP08514 1039 aa14.02□□□□□ -0.17
HOXC9-202ENST00000504557 CCL4P13236 92 aa14.02□□□□□ -0.17
HOXC9-202ENST00000504557 TYRP1P17643 537 aa14.02□□□□□ -0.17
HOXC9-202ENST00000504557 VCLP18206 1134 aa14.02□□□□□ -0.17
HOXC9-202ENST00000504557 TERF1P54274 439 aa14.02□□□□□ -0.17
HOXC9-202ENST00000504557 CXADRP78310 365 aa14.02□□□□□ -0.17
HOXC9-202ENST00000504557 CFHR1Q03591 330 aa14.02□□□□□ -0.17
HOXC9-202ENST00000504557 EIF3IQ13347 325 aaKnown RBP14.02□□□□□ -0.17
HOXC9-202ENST00000504557 KIR2DS5Q14953 304 aa14.02□□□□□ -0.17
HOXC9-202ENST00000504557 NR1D2Q14995 579 aa14.02□□□□□ -0.17
HOXC9-202ENST00000504557 CCDC38Q502W7 563 aa14.02□□□□□ -0.17
HOXC9-202ENST00000504557 ZRANB3Q5FWF4 1079 aa14.02□□□□□ -0.17
HOXC9-202ENST00000504557 CHCHD2P9Q5T1J5 151 aaPredicted RBP14.02□□□□□ -0.17
HOXC9-202ENST00000504557 BROXQ5VW32 411 aa14.02□□□□□ -0.17
HOXC9-202ENST00000504557 PPP1R21Q6ZMI0 780 aa14.02□□□□□ -0.17
HOXC9-202ENST00000504557 FAM129CQ86XR2 697 aa14.02□□□□□ -0.17
HOXC9-202ENST00000504557 CCDC89Q8N998 374 aa14.02□□□□□ -0.17
HOXC9-202ENST00000504557 DNAAF3Q8N9W5 541 aa14.02□□□□□ -0.17
HOXC9-202ENST00000504557 DDHD1Q8NEL9 900 aa14.02□□□□□ -0.17
HOXC9-202ENST00000504557 OR52K1Q8NGK4 314 aa14.02□□□□□ -0.17
HOXC9-202ENST00000504557 JPH3Q8WXH2 748 aaPredicted RBP14.02□□□□□ -0.17
HOXC9-202ENST00000504557 USP7Q93009 1102 aa14.02□□□□□ -0.17
HOXC9-202ENST00000504557 CXorf40BQ96DE9 158 aa14.02□□□□□ -0.17
HOXC9-202ENST00000504557 SGF29Q96ES7 293 aa14.02□□□□□ -0.17
HOXC9-202ENST00000504557 CCDC97Q96F63 343 aaPredicted RBP14.02□□□□□ -0.17
HOXC9-202ENST00000504557 TIMM29Q9BSF4 260 aa14.02□□□□□ -0.17
HOXC9-202ENST00000504557 SARS2Q9NP81 518 aaKnown RBP14.02□□□□□ -0.17
HOXC9-202ENST00000504557 GOLGA6L3A6NEY3 463 aa14.01□□□□□ -0.17
HOXC9-202ENST00000504557 OR5K4A6NMS3 321 aa14.01□□□□□ -0.17
HOXC9-202ENST00000504557 CDRT15L2A8MXV6 281 aa14.01□□□□□ -0.17
HOXC9-202ENST00000504557 CEP104O60308 925 aa14.01□□□□□ -0.17
HOXC9-202ENST00000504557 PRAMEF10O60809 474 aa14.01□□□□□ -0.17
HOXC9-202ENST00000504557 AP2A1O95782 977 aa14.01□□□□□ -0.17
HOXC9-202ENST00000504557 FGGP02679 453 aa14.01□□□□□ -0.17
HOXC9-202ENST00000504557 ZSCAN5DPP0CG00 497 aa14.01□□□□□ -0.17
HOXC9-202ENST00000504557 PRSS56P0CW18 603 aa14.01□□□□□ -0.17
HOXC9-202ENST00000504557 ITGALP20701 1170 aa14.01□□□□□ -0.17
HOXC9-202ENST00000504557 MC4RP32245 332 aa14.01□□□□□ -0.17
HOXC9-202ENST00000504557 SLC19A1P41440 591 aa14.01□□□□□ -0.17
HOXC9-202ENST00000504557 CDKN1CP49918 316 aaPredicted RBP14.01□□□□□ -0.17
HOXC9-202ENST00000504557 ZNF140P52738 457 aaPredicted RBP14.01□□□□□ -0.17
HOXC9-202ENST00000504557 LIMK2P53671 638 aa14.01□□□□□ -0.17
HOXC9-202ENST00000504557 GPLD1P80108 840 aa14.01□□□□□ -0.17
HOXC9-202ENST00000504557 PDE1BQ01064 536 aa14.01□□□□□ -0.17
HOXC9-202ENST00000504557 TLE3Q04726 772 aa14.01□□□□□ -0.17
HOXC9-202ENST00000504557 NFE2L1Q14494 772 aa14.01□□□□□ -0.17
HOXC9-202ENST00000504557 OASLQ15646 514 aaKnown RBP14.01□□□□□ -0.17
HOXC9-202ENST00000504557 KCTD11Q693B1 232 aa14.01□□□□□ -0.17
HOXC9-202ENST00000504557 FAM83HQ6ZRV2 1179 aaPredicted RBP14.01□□□□□ -0.17
HOXC9-202ENST00000504557 TAS2R42Q7RTR8 314 aa14.01□□□□□ -0.17
HOXC9-202ENST00000504557 GSTA5Q7RTV2 222 aa14.01□□□□□ -0.17
HOXC9-202ENST00000504557 C11orf96Q7Z7L8 435 aa14.01□□□□□ -0.17
HOXC9-202ENST00000504557 AMZ2Q86W34 360 aa14.01□□□□□ -0.17
HOXC9-202ENST00000504557 SH3KBP1Q96B97 665 aa14.01□□□□□ -0.17
HOXC9-202ENST00000504557 RNF31Q96EP0 1072 aa14.01□□□□□ -0.17
HOXC9-202ENST00000504557 DCUN1D1Q96GG9 259 aa14.01□□□□□ -0.17
HOXC9-202ENST00000504557 FCRL3Q96P31 734 aaPredicted RBP14.01□□□□□ -0.17
HOXC9-202ENST00000504557 ETNK1Q9HBU6 452 aa14.01□□□□□ -0.17
HOXC9-202ENST00000504557 CPNE5Q9HCH3 593 aa14.01□□□□□ -0.17
HOXC9-202ENST00000504557 ZNF624Q9P2J8 865 aaPredicted RBP14.01□□□□□ -0.17
HOXC9-202ENST00000504557 WDR37Q9Y2I8 494 aa14.01□□□□□ -0.17
HOXC9-202ENST00000504557 CFAP20Q9Y6A4 193 aaKnown RBP14.01□□□□□ -0.17
HOXC9-202ENST00000504557 SLC30A1Q9Y6M5 507 aa14.01□□□□□ -0.17
HOXC9-202ENST00000504557 LAMA5O15230 3695 aa14.01□□□□□ -0.17
HOXC9-202ENST00000504557 AHCTF1Q8WYP5 2266 aa14.01□□□□□ -0.17
HOXC9-202ENST00000504557 BPTFQ12830 3046 aa14□□□□□ -0.17
HOXC9-202ENST00000504557 PSMD3O43242 534 aa14□□□□□ -0.17
HOXC9-202ENST00000504557 LDB2O43679 373 aa14□□□□□ -0.17
HOXC9-202ENST00000504557 BRAFP15056 766 aa14□□□□□ -0.17
HOXC9-202ENST00000504557 AMD1P17707 334 aa14□□□□□ -0.17
HOXC9-202ENST00000504557 CSTF2P33240 577 aaKnown RBP eCLIP14□□□□□ -0.17
HOXC9-202ENST00000504557 HALP42357 657 aa14□□□□□ -0.17
HOXC9-202ENST00000504557 CLCNKAP51800 687 aa14□□□□□ -0.17
HOXC9-202ENST00000504557 XIAPP98170 497 aa14□□□□□ -0.17
HOXC9-202ENST00000504557 MSLNQ13421 630 aaPredicted RBP14□□□□□ -0.17
HOXC9-202ENST00000504557 CLCA4Q14CN2 919 aa14□□□□□ -0.17
HOXC9-202ENST00000504557 TGIF1Q15583 401 aa14□□□□□ -0.17
HOXC9-202ENST00000504557 LONRF2Q1L5Z9 754 aa14□□□□□ -0.17
HOXC9-202ENST00000504557 ARHGAP40Q5TG30 622 aa14□□□□□ -0.17
HOXC9-202ENST00000504557 GLIS1Q8NBF1 620 aa14□□□□□ -0.17
HOXC9-202ENST00000504557 TRIM58Q8NG06 486 aa14□□□□□ -0.17
HOXC9-202ENST00000504557 OR4D9Q8NGE8 314 aa14□□□□□ -0.17
HOXC9-202ENST00000504557 TLR10Q9BXR5 811 aa14□□□□□ -0.17
HOXC9-202ENST00000504557 LDHAL6BQ9BYZ2 381 aaPredicted RBP14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms