RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 PHIPQ8WWQ0 1821 aa10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 ZNF623O75123 536 aa10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 ATG13O75143 517 aa10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 NTRK1P04629 796 aa10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 NELFEP18615 380 aaKnown RBP10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 GCAP28676 217 aa10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 NSG1P42857 185 aa10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 CDC42P60953 191 aa10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 MRPS15P82914 257 aaKnown RBP10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 DLG1Q12959 904 aa10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 ATAD3BQ5T9A4 648 aa10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 AGMOQ6ZNB7 445 aa10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 HIPK1Q86Z02 1210 aa10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 DDX51Q8N8A6 666 aaKnown RBP eCLIP10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 PEX13Q92968 403 aa10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 BBS4Q96RK4 519 aa10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 TMEM209Q96SK2 561 aa10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 PLK2Q9NYY3 685 aa10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 SAMHD1Q9Y3Z3 626 aaKnown RBP10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 CPQQ9Y646 472 aa10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 MBLAC1A4D2B0 266 aaPredicted RBP10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 RGS5O15539 181 aa10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 POP4O95707 220 aaKnown RBP10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 EPOP01588 193 aa10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 HAPLN1P10915 354 aaPredicted RBP10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 PRPS2P11908 318 aa10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 KIR3DL1P43629 444 aa10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 ASMTP46597 345 aa10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 LEPRP48357 1165 aaKnown RBP10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 STC1P52823 247 aa10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 EEFSECP57772 596 aaKnown RBP10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 TRAF3Q13114 568 aa10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 GPR17Q13304 367 aa10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 GPR107Q5VW38 600 aa10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 RASAL3Q86YV0 1011 aa10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 DEPDC4Q8N2C3 294 aa10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 SVOPLQ8N434 492 aa10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 MYDGFQ969H8 173 aa10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 C1QTNF7Q9BXJ2 289 aa10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 TNKS2Q9H2K2 1166 aa10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 TTC24A2A3L6 582 aaPredicted RBP10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 UGT2B4P06133 528 aa10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 SPATA31D3P0C874 917 aa10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 NTSP30990 170 aa10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 ETV4P43268 484 aa10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 CCR3P51677 355 aa10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 MAPK10P53779 464 aa10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 RPS24P62847 133 aaKnown RBP10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 TRIM40Q6P9F5 258 aa10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 SPATA31D4Q6ZUB0 917 aa10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 KRT73Q86Y46 540 aa10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 CCDC103Q8IW40 242 aa10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 KIAA2013Q8IYS2 634 aa10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 OFCC1Q8IZS5 231 aa10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 UMODL1-AS1Q8N2C9 162 aa10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 LIX1Q8N485 282 aa10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 OR7A2PQ8NGA2 310 aa10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 OR4A15Q8NGL6 344 aa10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 IMP4Q96G21 291 aaKnown RBP10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 DEFB118Q96PH6 123 aa10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 SGK2Q9HBY8 427 aa10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 IFT80Q9P2H3 777 aaPredicted RBP10.65□□□□□ -0.7
LIMCH1-205ENST00000503057 ARVCFO00192 962 aa10.65□□□□□ -0.71
LIMCH1-205ENST00000503057 SUV39H1O43463 412 aa10.65□□□□□ -0.71
LIMCH1-205ENST00000503057 MAFKO60675 156 aa10.65□□□□□ -0.71
LIMCH1-205ENST00000503057 IFNGR2P38484 337 aa10.65□□□□□ -0.71
LIMCH1-205ENST00000503057 GSSP48637 474 aa10.65□□□□□ -0.71
LIMCH1-205ENST00000503057 CPTPQ5TA50 214 aa10.65□□□□□ -0.71
LIMCH1-205ENST00000503057 THAP5Q7Z6K1 395 aa10.65□□□□□ -0.71
LIMCH1-205ENST00000503057 PIM3Q86V86 326 aa10.65□□□□□ -0.71
LIMCH1-205ENST00000503057 C11orf74Q86VG3 221 aa10.65□□□□□ -0.71
LIMCH1-205ENST00000503057 AHI1Q8N157 1196 aa10.65□□□□□ -0.71
LIMCH1-205ENST00000503057 PACRGLQ8N7B6 248 aa10.65□□□□□ -0.71
LIMCH1-205ENST00000503057 ARL14EPQ8N8R7 260 aaPredicted RBP10.65□□□□□ -0.71
LIMCH1-205ENST00000503057 GPR156Q8NFN8 814 aa10.65□□□□□ -0.71
LIMCH1-205ENST00000503057 CLHC1Q8NHS4 586 aa10.65□□□□□ -0.71
LIMCH1-205ENST00000503057 KCNN1Q92952 543 aa10.65□□□□□ -0.71
LIMCH1-205ENST00000503057 MRGPRX2Q96LB1 330 aa10.65□□□□□ -0.71
LIMCH1-205ENST00000503057 ROGDIQ9GZN7 287 aa10.65□□□□□ -0.71
LIMCH1-205ENST00000503057 NLE1Q9NVX2 485 aaPredicted RBP10.65□□□□□ -0.71
LIMCH1-205ENST00000503057 C9JVG2 144 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 BCAS2O75934 225 aaPredicted RBP10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 GNRH1P01148 92 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 INHAP05111 366 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 GSTM1P09488 218 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 THRBP10828 461 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 ITPKAP23677 461 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 CTNNB1P35222 781 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 ATP1A4Q13733 1029 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 SPRED3Q2MJR0 410 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 GPR33Q49SQ1 333 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 ZNF678Q5SXM1 525 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 CAPN13Q6MZZ7 669 aaPredicted RBP10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 PRR23BQ6ZRT6 265 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 OVCA2Q8WZ82 227 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 B3GALT6Q96L58 329 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 TSSK3Q96PN8 268 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 ZIM2Q9NZV7 527 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 VPS51Q9UID3 782 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms