RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 VPS13AQ96RL7 3174 aa11.73□□□□□ -0.53
CUX1-210ENST00000497815 MYO15AQ9UKN7 3530 aa11.73□□□□□ -0.53
CUX1-210ENST00000497815 GPR89AB7ZAQ6 455 aa11.73□□□□□ -0.53
CUX1-210ENST00000497815 CHUKO15111 745 aa11.73□□□□□ -0.53
CUX1-210ENST00000497815 FFAR2O15552 330 aa11.73□□□□□ -0.53
CUX1-210ENST00000497815 GDF9O60383 454 aa11.73□□□□□ -0.53
CUX1-210ENST00000497815 DFNA5O60443 496 aa11.73□□□□□ -0.53
CUX1-210ENST00000497815 PIAS2O75928 621 aa11.73□□□□□ -0.53
CUX1-210ENST00000497815 S1PR4O95977 384 aa11.73□□□□□ -0.53
CUX1-210ENST00000497815 GSTA2P09210 222 aa11.73□□□□□ -0.53
CUX1-210ENST00000497815 GPR89BP0CG08 455 aa11.73□□□□□ -0.53
CUX1-210ENST00000497815 ITGB6P18564 788 aa11.73□□□□□ -0.53
CUX1-210ENST00000497815 MCM3P25205 808 aa11.73□□□□□ -0.53
CUX1-210ENST00000497815 EPHA8P29322 1005 aaPredicted RBP11.73□□□□□ -0.53
CUX1-210ENST00000497815 FMO4P31512 558 aa11.73□□□□□ -0.53
CUX1-210ENST00000497815 STX2P32856 288 aa11.73□□□□□ -0.53
CUX1-210ENST00000497815 PHBP35232 272 aa11.73□□□□□ -0.53
CUX1-210ENST00000497815 CCT8P50990 548 aa11.73□□□□□ -0.53
CUX1-210ENST00000497815 PMS2P54278 862 aa11.73□□□□□ -0.53
CUX1-210ENST00000497815 EIF3BP55884 814 aaKnown RBP11.73□□□□□ -0.53
CUX1-210ENST00000497815 CTBSQ01459 385 aa11.73□□□□□ -0.53
CUX1-210ENST00000497815 FRG1Q14331 258 aaKnown RBP11.73□□□□□ -0.53
CUX1-210ENST00000497815 TYSND1Q2T9J0 566 aa11.73□□□□□ -0.53
CUX1-210ENST00000497815 TEDDM1Q5T9Z0 273 aa11.73□□□□□ -0.53
CUX1-210ENST00000497815 RNF187Q5TA31 235 aaPredicted RBP11.73□□□□□ -0.53
CUX1-210ENST00000497815 WDR93Q6P2C0 686 aa11.73□□□□□ -0.53
CUX1-210ENST00000497815 RELL1Q8IUW5 271 aa11.73□□□□□ -0.53
CUX1-210ENST00000497815 ZNF547Q8IVP9 402 aa11.73□□□□□ -0.53
CUX1-210ENST00000497815 CTAGE3PQ8IX95 158 aa11.73□□□□□ -0.53
CUX1-210ENST00000497815 LMNTD2Q8IXW0 634 aa11.73□□□□□ -0.53
CUX1-210ENST00000497815 ZNF548Q8NEK5 533 aaPredicted RBP11.73□□□□□ -0.53
CUX1-210ENST00000497815 GABPB2Q8TAK5 448 aaPredicted RBP11.73□□□□□ -0.53
CUX1-210ENST00000497815 LPGAT1Q92604 370 aa11.73□□□□□ -0.53
CUX1-210ENST00000497815 SCARF2Q96GP6 870 aaPredicted RBP11.73□□□□□ -0.53
CUX1-210ENST00000497815 TCF12Q99081 682 aa11.73□□□□□ -0.53
CUX1-210ENST00000497815 TMEM9BQ9NQ34 198 aa11.73□□□□□ -0.53
CUX1-210ENST00000497815 SMYD2Q9NRG4 433 aa11.73□□□□□ -0.53
CUX1-210ENST00000497815 SPASTQ9UBP0 616 aa11.73□□□□□ -0.53
CUX1-210ENST00000497815 KCNK6Q9Y257 313 aa11.73□□□□□ -0.53
CUX1-210ENST00000497815 CACNA1HO95180 2353 aa11.72□□□□□ -0.53
CUX1-210ENST00000497815 ADAMTS9Q9P2N4 1935 aa11.72□□□□□ -0.53
CUX1-210ENST00000497815 PLXNB3Q9ULL4 1909 aa11.72□□□□□ -0.53
CUX1-210ENST00000497815 IQCF5A8MTL0 148 aa11.72□□□□□ -0.53
CUX1-210ENST00000497815 CXorf49A8MYA2 514 aaPredicted RBP11.72□□□□□ -0.53
CUX1-210ENST00000497815 CDX4O14627 284 aaPredicted RBP11.72□□□□□ -0.53
CUX1-210ENST00000497815 PRMT5O14744 637 aaPredicted RBP11.72□□□□□ -0.53
CUX1-210ENST00000497815 KMOO15229 486 aa11.72□□□□□ -0.53
CUX1-210ENST00000497815 AQP9O43315 295 aa11.72□□□□□ -0.53
CUX1-210ENST00000497815 SGTAO43765 313 aa11.72□□□□□ -0.53
CUX1-210ENST00000497815 SPAG6O75602 509 aa11.72□□□□□ -0.53
CUX1-210ENST00000497815 POP7O75817 140 aaKnown RBP11.72□□□□□ -0.53
CUX1-210ENST00000497815 HAUS5O94927 633 aa11.72□□□□□ -0.53
CUX1-210ENST00000497815 OR56A5P0C7T3 313 aa11.72□□□□□ -0.53
CUX1-210ENST00000497815 DGKAP23743 735 aa11.72□□□□□ -0.53
CUX1-210ENST00000497815 AK4P27144 223 aaPredicted RBP11.72□□□□□ -0.53
CUX1-210ENST00000497815 RXRGP48443 463 aa11.72□□□□□ -0.53
CUX1-210ENST00000497815 ILF3Q12906 894 aaKnown RBP eCLIP11.72□□□□□ -0.534e-7■■■■□ 21.7
CUX1-210ENST00000497815 EFTUD2Q15029 972 aaKnown RBP eCLIP11.72□□□□□ -0.538e-8■■■■□ 20.9
CUX1-210ENST00000497815 KBTBD12Q3ZCT8 623 aa11.72□□□□□ -0.53
CUX1-210ENST00000497815 PTRHD1Q6GMV3 140 aaKnown RBP11.72□□□□□ -0.53
CUX1-210ENST00000497815 CNSTQ6PJW8 725 aa11.72□□□□□ -0.53
CUX1-210ENST00000497815 SLC30A9Q6PML9 568 aa11.72□□□□□ -0.53
CUX1-210ENST00000497815 PACS1Q6VY07 963 aa11.72□□□□□ -0.53
CUX1-210ENST00000497815 TRMT10CQ7L0Y3 403 aaKnown RBP11.72□□□□□ -0.53
CUX1-210ENST00000497815 STRA8Q7Z7C7 330 aa11.72□□□□□ -0.53
CUX1-210ENST00000497815 TAF8Q7Z7C8 310 aa11.72□□□□□ -0.53
CUX1-210ENST00000497815 CNTN4Q8IWV2 1026 aa11.72□□□□□ -0.53
CUX1-210ENST00000497815 KIAA2013Q8IYS2 634 aa11.72□□□□□ -0.53
CUX1-210ENST00000497815 KRT222Q8N1A0 295 aa11.72□□□□□ -0.53
CUX1-210ENST00000497815 SLC25A45Q8N413 288 aa11.72□□□□□ -0.53
CUX1-210ENST00000497815 PPM1NQ8N819 430 aa11.72□□□□□ -0.53
CUX1-210ENST00000497815 C2CD4AQ8NCU7 369 aaPredicted RBP11.72□□□□□ -0.53
CUX1-210ENST00000497815 CDKL2Q92772 493 aa11.72□□□□□ -0.53
CUX1-210ENST00000497815 FAM136AQ96C01 138 aa11.72□□□□□ -0.53
CUX1-210ENST00000497815 MRRFQ96E11 262 aaKnown RBP11.72□□□□□ -0.53
CUX1-210ENST00000497815 ATXN7L3BQ96GX2 97 aa11.72□□□□□ -0.53
CUX1-210ENST00000497815 ZNF514Q96K75 400 aaPredicted RBP11.72□□□□□ -0.53
CUX1-210ENST00000497815 OSGEPL1Q9H4B0 414 aa11.72□□□□□ -0.53
CUX1-210ENST00000497815 KLC4Q9NSK0 619 aa11.72□□□□□ -0.53
CUX1-210ENST00000497815 INTS10Q9NVR2 710 aaKnown RBP11.72□□□□□ -0.53
CUX1-210ENST00000497815 TRNAU1APQ9NX07 287 aaKnown RBP11.72□□□□□ -0.53
CUX1-210ENST00000497815 SLC23A2Q9UGH3 650 aa11.72□□□□□ -0.53
CUX1-210ENST00000497815 GPR34Q9UPC5 381 aa11.72□□□□□ -0.53
CUX1-210ENST00000497815 DOLKQ9UPQ8 538 aa11.72□□□□□ -0.53
CUX1-210ENST00000497815 VPS9D1Q9Y2B5 631 aa11.72□□□□□ -0.53
CUX1-210ENST00000497815 ST14Q9Y5Y6 855 aa11.72□□□□□ -0.53
CUX1-210ENST00000497815 PSAT1Q9Y617 370 aa11.72□□□□□ -0.53
CUX1-210ENST00000497815 LOC105378220A0A1B0GUY1 285 aaPredicted RBP11.71□□□□□ -0.53
CUX1-210ENST00000497815 FAM159BA6NKW6 160 aa11.71□□□□□ -0.53
CUX1-210ENST00000497815 C4orf47A7E2U8 309 aa11.71□□□□□ -0.53
CUX1-210ENST00000497815 YKT6O15498 198 aa11.71□□□□□ -0.53
CUX1-210ENST00000497815 FOXD2O60548 495 aaPredicted RBP11.71□□□□□ -0.53
CUX1-210ENST00000497815 SNX2O60749 519 aa11.71□□□□□ -0.53
CUX1-210ENST00000497815 AP2A2O94973 939 aa11.71□□□□□ -0.53
CUX1-210ENST00000497815 TRIM16O95361 564 aa11.71□□□□□ -0.53
CUX1-210ENST00000497815 AHSGP02765 367 aa11.71□□□□□ -0.53
CUX1-210ENST00000497815 GABRB3P28472 473 aa11.71□□□□□ -0.53
CUX1-210ENST00000497815 ACTR1BP42025 376 aa11.71□□□□□ -0.53
CUX1-210ENST00000497815 CD151P48509 253 aa11.71□□□□□ -0.53
CUX1-210ENST00000497815 PRLHRP49683 370 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms